Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004028

Physical Location & Seq

Genomic Coordinates Reverse (-)

95467 .. 95823

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000229

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCGTTTCTGGGATCTGCGTGCCCCCTGGTTAGAACCTCTAAGGGGTCATAATGGTTTGGACTTGAGTAGGCTGAAAAAAGACATACAGCCTTGGCAAGAGCGGCGTTCTGCGGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGTGGCGTAGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCTGCCGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009539 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII

Protein Analysis

119

Amino Acids

13.35

Weight (kDa)

9.39

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII	PF00421	13 - 114	8.1e-29	Photosystem II protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00270
malus_domestica	MD08G1154700.v1.1 MD09G1235700.v1.1
rosa_chinensis	RchiOBHm_Chr6g0258011 RchiOBHm_CPg0502321 RchiOBHm_CPg0502341 RchiOBHm_MTg0498861
rosa_laevigata	RLG00000000046 RLG00000000114 RLG00000000115 RLG00000000229 RLG00000000230 RLG00000000245 RLG00000000265 RLG00000000285 RLG00000000286 RLG00000000298 RLG00000000319 RLG00000000320 RLG00000000336 RLG00000000341 RLG00000000342 RLG00000001029
rosa_multiflora	Rmu_sc0000861.1_g000070 Rmu_sc0009742.1_g000009
rosa_roxburghii	Rroxscaffold_2G00119060 Rroxscaffold_2G00119340 Rroxscaffold_4G00315040
rosa_rugosa	Rorug06G0354500.1 RorugMtG0002000
rosa_samantha	Rh1BG017300 Rh5BG294500 Rh5DG304300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	103
AciI	CCGC	2 cut(s)	103, 113
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	302, 326
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	2 cut(s)	167, 287
AluI	AGCT	2 cut(s)	167, 287
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	290
ApeKI	GCWGC	3 cut(s)	284, 287, 290
ApoI	RAATTY	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	280
BauI	CACGAG	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	274, 277, 296
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	201, 233
BisI	GCNGC	4 cut(s)	104, 285, 288, 291
BlsI	GCNGC	4 cut(s)	105, 286, 289, 292
Bme1390I	CCNGG	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	85
BsaJI	CCNNGG	3 cut(s)	26, 92, 153
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	3 cut(s)	26, 92, 153
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	336
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	274, 277, 296
BsgI	GTGCAG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	25, 280
Bsp143I	GATC	3 cut(s)	13, 174, 313
BspACI	CCGC	2 cut(s)	103, 113
BspPI	GGATC	1 cut(s)	21
BsrBI	CCGCTC	1 cut(s)	103
BssECI	CCNNGG	3 cut(s)	26, 92, 153
BssMI	GATC	3 cut(s)	13, 174, 313
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	28
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	21, 267
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	153
BstKTI	GATC	3 cut(s)	16, 177, 316
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	3 cut(s)	13, 174, 313
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 275, 284, 290
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	26
BstSLI	GKGCMC	1 cut(s)	25
BstV1I	GCAGC	3 cut(s)	274, 277, 296
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	21, 267
CaiI	CAGNNNCTG	1 cut(s)	290
CviAII	CATG	3 cut(s)	128, 266, 340
CviJI	RGCY	5 cut(s)	73, 91, 167, 278, 287
CviKI_1	RGCY	5 cut(s)	73, 91, 167, 278, 287
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	3 cut(s)	15, 176, 315
DpnII	GATC	3 cut(s)	13, 174, 313
DraI	TTTAAA	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	3 cut(s)	131, 269, 343
FaiI	YATR	9 cut(s)	51, 86, 120, 122, 129, 192, 262, 267, 341
FatI	CATG	3 cut(s)	127, 265, 339
Fnu4HI	GCNGC	4 cut(s)	104, 285, 288, 291
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	4 cut(s)	104, 285, 288, 291
FspBI	CTAG	2 cut(s)	201, 233
GluI	GCNGC	4 cut(s)	104, 285, 288, 291
HapII	CCGG	1 cut(s)	294
Hin1II	CATG	3 cut(s)	131, 269, 343
HinfI	GANTC	3 cut(s)	124, 237, 343
HpaII	CCGG	1 cut(s)	294
Hpy188III	TCNNGA	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	182, 269, 284
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 275, 284, 290
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	131, 269, 343
Kzo9I	GATC	3 cut(s)	13, 174, 313
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	5 cut(s)	13, 40, 255, 307, 342
Lsp1109I	GCAGC	3 cut(s)	274, 277, 296
MaeI	CTAG	2 cut(s)	201, 233
MalI	GATC	3 cut(s)	15, 176, 315
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	3 cut(s)	13, 174, 313
MboII	GAAGA	1 cut(s)	232
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	2 cut(s)	25, 280
MluCI	AATT	3 cut(s)	148, 187, 309
MlyI	GAGTC	2 cut(s)	118, 337
MnlI	CCTC	2 cut(s)	48, 357
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	2 cut(s)	146, 351
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	4 cut(s)	103, 275, 284, 290
NdeII	GATC	3 cut(s)	13, 174, 313
NlaIII	CATG	3 cut(s)	131, 269, 343
NspI	RCATGY	1 cut(s)	269
PaeI	GCATGC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	237
PkrI	GCNGC	4 cut(s)	105, 286, 289, 292
PleI	GAGTC	2 cut(s)	118, 337
PpsI	GAGTC	2 cut(s)	118, 337
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	146, 351
SatI	GCNGC	4 cut(s)	104, 285, 288, 291
Sau3AI	GATC	3 cut(s)	13, 174, 313
SchI	GAGTC	2 cut(s)	118, 337
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	2 cut(s)	25, 280
SetI	ASST	6 cut(s)	40, 142, 169, 256, 289, 331
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
SphI	GCATGC	1 cut(s)	269
Sse9I	AATT	3 cut(s)	148, 187, 309
SsiI	CCGC	2 cut(s)	103, 113
SspMI	CTAG	2 cut(s)	201, 233
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	92
TasI	AATT	3 cut(s)	148, 187, 309
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	2 cut(s)	146, 351
Tru9I	TTAA	2 cut(s)	146, 351
TseI	GCWGC	3 cut(s)	284, 287, 290
TspGWI	ACGGA	1 cut(s)	142
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	2 cut(s)	201, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.