Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004028

Physical Location & Seq

Genomic Coordinates Reverse (-)

96276 .. 97899

Gene Structure 1624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000230

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGACTATAGCCCTTGGTAAATTTACCAAAGACGAAAATGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTAGCAAGTTCCTATTTGGAAGGCTGTAACTTCTTAACCGCCGCAGTTTCCACCCCTGCTAACAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTGGGCGGTCTGTGGACTTTTGTCGCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTACGACCTTATAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAATCCATTTCATATGATGGGAGTTGCGGGGGTGTTGGGCGCTGCTCTTGCTCTTGGAGTAGTCGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCCGGTAAACTACTGGGGGCCCATGTCGCCCATGCCGGATTAATTGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCTCATTTCGTACCAGAGAAGCCTATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCGGGTGGGGAAGTTCTAGACACCTTTCCATACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCTGCAGTATTGGGCTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACTCTTGAAGAATCTTTTCCATTTTTCGGTTATGTATGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACTTAATCTTGTTAGGCATAGGTGCTTTTCTTCTAGTATTCAAGGCTCTTTATTTTGGGGGTGTATATGATACTTGGGCTCCGGGTGGGGGAGATGTAAGAAAAATTACCAAACCTAACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII Photo_RC

Protein Analysis

435

Amino Acids

47.73

Weight (kDa)

5.93

Isoelectric Point (pI)

30.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Photo_RC	PF00124	29 - 216	4.4e-50	Photosynthetic reaction centre protein
PSII	PF00421	261 - 419	1.1e-52	Photosystem II protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00270
malus_domestica	MD08G1154700.v1.1 MD09G1235700.v1.1
rosa_chinensis	RchiOBHm_Chr6g0258011 RchiOBHm_CPg0502321 RchiOBHm_CPg0502341 RchiOBHm_MTg0498861
rosa_laevigata	RLG00000000046 RLG00000000114 RLG00000000115 RLG00000000229 RLG00000000230 RLG00000000245 RLG00000000265 RLG00000000285 RLG00000000286 RLG00000000298 RLG00000000319 RLG00000000320 RLG00000000336 RLG00000000341 RLG00000000342 RLG00000001029
rosa_multiflora	Rmu_sc0000861.1_g000070 Rmu_sc0009742.1_g000009
rosa_roxburghii	Rroxscaffold_2G00119060 Rroxscaffold_2G00119340 Rroxscaffold_4G00315040
rosa_rugosa	Rorug06G0354500.1 RorugMtG0002000
rosa_samantha	Rh1BG017300 Rh5BG294500 Rh5DG304300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
AccI	GTMKAC	1 cut(s)	179
AciI	CCGC	7 cut(s)	228, 231, 327, 485, 608, 701, 1074
AclWI	GGATC	1 cut(s)	701
AcsI	RAATTY	2 cut(s)	20, 713
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	3 cut(s)	157, 918, 1038
AfiI	CCNNNNNNNGG	4 cut(s)	521, 700, 1130, 1268
AgeI	ACCGGT	1 cut(s)	782
AgsI	TTSAA	6 cut(s)	395, 413, 583, 902, 1112, 1222
AluBI	AGCT	4 cut(s)	533, 755, 761, 968
AluI	AGCT	4 cut(s)	533, 755, 761, 968
Alw26I	GTCTC	2 cut(s)	713, 1097
AlwI	GGATC	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	1100
AoxI	GGCC	5 cut(s)	103, 651, 798, 843, 879
ApaI	GGGCCC	1 cut(s)	847
ApeKI	GCWGC	3 cut(s)	530, 623, 698
ApoI	RAATTY	2 cut(s)	20, 713
ArsI	GACNNNNNNTTYG	2 cut(s)	1153, 1185
AseI	ATTAAT	2 cut(s)	866, 947
AsiGI	ACCGGT	1 cut(s)	782
Asp700I	GAANNNNTTC	1 cut(s)	1119
AspLEI	GCGC	2 cut(s)	514, 623
AsuC2I	CCSGG	3 cut(s)	802, 993, 1263
AvaI	CYCGRG	1 cut(s)	1100
AvaII	GGWCC	5 cut(s)	76, 284, 446, 989, 1097
BaeGI	GKGCMC	1 cut(s)	847
BanII	GRGCYC	2 cut(s)	847, 1261
BbvI	GCAGC	3 cut(s)	542, 610, 710
BccI	CCATC	1 cut(s)	592
BcnI	CCSGG	3 cut(s)	802, 993, 1263
BcoDI	GTCTC	2 cut(s)	713, 1097
BfaI	CTAG	5 cut(s)	488, 965, 974, 1007, 1214
BfmI	CTRYAG	2 cut(s)	6, 1056
BfoI	RGCGCY	1 cut(s)	624
BisI	GCNGC	4 cut(s)	231, 531, 624, 699
BlsI	GCNGC	4 cut(s)	232, 532, 625, 700
BmcAI	AGTACT	1 cut(s)	1038
Bme1390I	CCNGG	3 cut(s)	802, 993, 1263
Bme18I	GGWCC	5 cut(s)	76, 284, 446, 989, 1097
BmeT110I	CYCGRG	1 cut(s)	1100
BmiI	GGNNCC	7 cut(s)	77, 285, 844, 845, 1098, 1099, 1260
BmrFI	CCNGG	3 cut(s)	802, 993, 1263
BmrI	ACTGGG	2 cut(s)	510, 848
BmuI	ACTGGG	2 cut(s)	510, 848
BoxI	GACNNNNGTC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	1053
BpuMI	CCSGG	3 cut(s)	802, 993, 1263
BsaAI	YACGTR	1 cut(s)	665
BsaJI	CCNNGG	3 cut(s)	13, 184, 559
BsaWI	WCCGGW	3 cut(s)	443, 782, 827
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 1243, 1273
Bsc4I	CCNNNNNNNGG	4 cut(s)	521, 700, 1130, 1268
Bse118I	RCCGGY	1 cut(s)	782
Bse1I	ACTGG	3 cut(s)	68, 516, 843
Bse3DI	GCAATG	1 cut(s)	894
BseDI	CCNNGG	3 cut(s)	13, 184, 559
BseGI	GGATG	2 cut(s)	64, 546
BseLI	CCNNNNNNNGG	4 cut(s)	521, 700, 1130, 1268
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	3 cut(s)	68, 516, 843
BseSI	GKGCMC	1 cut(s)	847
BseXI	GCAGC	3 cut(s)	542, 610, 710
BsgI	GTGCAG	1 cut(s)	717
BshFI	GGCC	5 cut(s)	105, 653, 800, 845, 881
BshTI	ACCGGT	1 cut(s)	782
BsiHKCI	CYCGRG	1 cut(s)	1100
BsiSI	CCGG	8 cut(s)	444, 783, 801, 828, 861, 882, 992, 1262
BslFI	GGGAC	2 cut(s)	89, 1110
BslI	CCNNNNNNNGG	4 cut(s)	521, 700, 1130, 1268
BsmAI	GTCTC	2 cut(s)	713, 1097
BsmFI	GGGAC	2 cut(s)	89, 1110
BsmI	GAATGC	2 cut(s)	437, 811
BsnI	GGCC	5 cut(s)	105, 653, 800, 845, 881
BsoBI	CYCGRG	1 cut(s)	1100
Bsp120I	GGGCCC	1 cut(s)	843
Bsp1286I	GDGCHC	2 cut(s)	847, 1261
Bsp143I	GATC	2 cut(s)	404, 706
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	7 cut(s)	228, 231, 327, 485, 608, 701, 1074
BspANI	GGCC	5 cut(s)	105, 653, 800, 845, 881
BspCNI	CTCAG	1 cut(s)	697
BspLI	GGNNCC	7 cut(s)	77, 285, 844, 845, 1098, 1099, 1260
BspMAI	CTGCAG	1 cut(s)	1060
BspPI	GGATC	1 cut(s)	701
BsrDI	GCAATG	1 cut(s)	894
BsrFI	RCCGGY	1 cut(s)	782
BsrI	ACTGG	3 cut(s)	68, 516, 843
BssAI	RCCGGY	1 cut(s)	782
BssECI	CCNNGG	3 cut(s)	13, 184, 559
BssMI	GATC	2 cut(s)	404, 706
BssNAI	GTATAC	1 cut(s)	180
BssT1I	CCWWGG	3 cut(s)	13, 184, 559
Bst1107I	GTATAC	1 cut(s)	180
Bst4CI	ACNGT	3 cut(s)	80, 254, 356
BstBAI	YACGTR	1 cut(s)	665
BstDEI	CTNAG	2 cut(s)	684, 1302
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	64, 546
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	2 cut(s)	514, 623
BstKTI	GATC	2 cut(s)	407, 709
BstMAI	GTCTC	2 cut(s)	713, 1097
BstMBI	GATC	2 cut(s)	404, 706
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 629, 797, 806, 851
BstPAI	GACNNNNGTC	1 cut(s)	341
BstSCI	CCNGG	3 cut(s)	800, 991, 1261
BstSFI	CTRYAG	2 cut(s)	6, 1056
BstSLI	GKGCMC	1 cut(s)	847
BstV1I	GCAGC	3 cut(s)	542, 610, 710
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BstZ17I	GTATAC	1 cut(s)	180
BsuRI	GGCC	5 cut(s)	105, 653, 800, 845, 881
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	64, 546
CfoI	GCGC	2 cut(s)	514, 623
Cfr10I	RCCGGY	1 cut(s)	782
Csp6I	GTAC	3 cut(s)	156, 917, 1037
CspAI	ACCGGT	1 cut(s)	782
CviAII	CATG	6 cut(s)	174, 185, 379, 848, 857, 1085
CviQI	GTAC	3 cut(s)	156, 917, 1037
DdeI	CTNAG	2 cut(s)	684, 1302
DpnI	GATC	2 cut(s)	406, 708
DpnII	GATC	2 cut(s)	404, 706
Eco130I	CCWWGG	3 cut(s)	13, 184, 559
Eco24I	GRGCYC	2 cut(s)	847, 1261
Eco47I	GGWCC	5 cut(s)	76, 284, 446, 989, 1097
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	1100
EcoO109I	RGGNCCY	3 cut(s)	284, 843, 1097
EcoT14I	CCWWGG	3 cut(s)	13, 184, 559
EcoT38I	GRGCYC	2 cut(s)	847, 1261
ErhI	CCWWGG	3 cut(s)	13, 184, 559
FaeI	CATG	6 cut(s)	177, 188, 382, 851, 860, 1088
FaqI	GGGAC	2 cut(s)	89, 1110
FatI	CATG	6 cut(s)	173, 184, 378, 847, 856, 1084
FauI	CCCGC	1 cut(s)	601
FauNDI	CATATG	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	4 cut(s)	231, 531, 624, 699
FokI	GGATG	2 cut(s)	71, 533
FriOI	GRGCYC	2 cut(s)	847, 1261
Fsp4HI	GCNGC	4 cut(s)	231, 531, 624, 699
FspBI	CTAG	5 cut(s)	488, 965, 974, 1007, 1214
GlaI	GCGC	2 cut(s)	513, 622
GluI	GCNGC	4 cut(s)	231, 531, 624, 699
GsuI	CTGGAG	1 cut(s)	1053
HaeII	RGCGCY	1 cut(s)	624
HaeIII	GGCC	5 cut(s)	105, 653, 800, 845, 881
HapII	CCGG	8 cut(s)	444, 783, 801, 828, 861, 882, 992, 1262
HhaI	GCGC	2 cut(s)	514, 623
Hin1II	CATG	6 cut(s)	177, 188, 382, 851, 860, 1088
Hin6I	GCGC	2 cut(s)	512, 621
HinP1I	GCGC	2 cut(s)	512, 621
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	4 cut(s)	543, 583, 1105, 1115
HpaII	CCGG	8 cut(s)	444, 783, 801, 828, 861, 882, 992, 1262
Hpy166II	GTNNAC	4 cut(s)	150, 180, 336, 833
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	8 cut(s)	287, 475, 686, 710, 767, 1007, 1032, 1109
Hpy8I	GTNNAC	4 cut(s)	150, 180, 336, 833
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	3 cut(s)	80, 254, 356
HpyCH4IV	ACGT	2 cut(s)	385, 664
HpyCH4V	TGCA	5 cut(s)	431, 437, 698, 1058, 1088
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 629, 797, 806, 851
HpyF3I	CTNAG	2 cut(s)	684, 1302
HpySE526I	ACGT	2 cut(s)	385, 664
Hsp92II	CATG	6 cut(s)	177, 188, 382, 851, 860, 1088
HspAI	GCGC	2 cut(s)	512, 621
KflI	GGGWCCC	1 cut(s)	1097
Kzo9I	GATC	2 cut(s)	404, 706
LmnI	GCTCC	2 cut(s)	884, 1264
Lsp1109I	GCAGC	3 cut(s)	542, 610, 710
MaeI	CTAG	5 cut(s)	488, 965, 974, 1007, 1214
MaeII	ACGT	2 cut(s)	385, 664
MaeIII	GTNAC	6 cut(s)	66, 166, 215, 273, 381, 767
MalI	GATC	2 cut(s)	406, 708
MboI	GATC	2 cut(s)	404, 706
MboII	GAAGA	3 cut(s)	716, 1124, 1202
MfeI	CAATTG	3 cut(s)	320, 432, 450
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	2 cut(s)	847, 1261
MlyI	GAGTC	1 cut(s)	1099
MnlI	CCTC	3 cut(s)	66, 560, 1063
MroXI	GAANNNNTTC	1 cut(s)	1119
MseI	TTAA	6 cut(s)	224, 746, 866, 947, 1046, 1184
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	8 cut(s)	444, 783, 801, 828, 861, 882, 992, 1262
MspR9I	CCNGG	3 cut(s)	802, 993, 1263
MunI	CAATTG	3 cut(s)	320, 432, 450
Mva1269I	GAATGC	2 cut(s)	437, 811
MwoI	GCNNNNNNNGC	5 cut(s)	131, 629, 797, 806, 851
NciI	CCSGG	3 cut(s)	802, 993, 1263
NcoI	CCATGG	1 cut(s)	184
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	2 cut(s)	404, 706
NlaIII	CATG	6 cut(s)	177, 188, 382, 851, 860, 1088
NlaIV	GGNNCC	7 cut(s)	77, 285, 844, 845, 1098, 1099, 1260
NmuCI	GTSAC	1 cut(s)	767
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PctI	GAATGC	2 cut(s)	437, 811
PdmI	GAANNNNTTC	1 cut(s)	1119
PfeI	GAWTC	3 cut(s)	543, 583, 1115
PinAI	ACCGGT	1 cut(s)	782
PkrI	GCNGC	4 cut(s)	232, 532, 625, 700
PleI	GAGTC	1 cut(s)	1099
PpsI	GAGTC	1 cut(s)	1099
Ppu21I	YACGTR	1 cut(s)	665
PpuMI	RGGWCCY	2 cut(s)	284, 1097
PshAI	GACNNNNGTC	1 cut(s)	341
PshBI	ATTAAT	2 cut(s)	866, 947
PsiI	TTATAA	1 cut(s)	426
Psp5II	RGGWCCY	2 cut(s)	284, 1097
PspN4I	GGNNCC	7 cut(s)	77, 285, 844, 845, 1098, 1099, 1260
PspOMI	GGGCCC	1 cut(s)	843
PspPPI	RGGWCCY	2 cut(s)	284, 1097
PstI	CTGCAG	1 cut(s)	1060
PsuI	RGATCY	1 cut(s)	706
RsaI	GTAC	3 cut(s)	157, 918, 1038
RsaNI	GTAC	3 cut(s)	156, 917, 1037
SaqAI	TTAA	6 cut(s)	224, 746, 866, 947, 1046, 1184
SatI	GCNGC	4 cut(s)	231, 531, 624, 699
Sau3AI	GATC	2 cut(s)	404, 706
ScaI	AGTACT	1 cut(s)	1038
SchI	GAGTC	1 cut(s)	1099
ScrFI	CCNGG	3 cut(s)	802, 993, 1263
SduI	GDGCHC	2 cut(s)	847, 1261
SfcI	CTRYAG	2 cut(s)	6, 1056
SinI	GGWCC	5 cut(s)	76, 284, 446, 989, 1097
SsiI	CCGC	7 cut(s)	228, 231, 327, 485, 608, 701, 1074
SspI	AATATT	1 cut(s)	739
SspMI	CTAG	5 cut(s)	488, 965, 974, 1007, 1214
StyD4I	CCNGG	3 cut(s)	800, 991, 1261
StyI	CCWWGG	3 cut(s)	13, 184, 559
TaaI	ACNGT	3 cut(s)	80, 254, 356
TaiI	ACGT	2 cut(s)	388, 667
TaqI	TCGA	2 cut(s)	403, 541
TaqII	GACCGA	1 cut(s)	635
TatI	WGTACW	1 cut(s)	1036
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	543, 583, 1115
Tru1I	TTAA	6 cut(s)	224, 746, 866, 947, 1046, 1184
Tru9I	TTAA	6 cut(s)	224, 746, 866, 947, 1046, 1184
TseFI	GTSAC	1 cut(s)	767
TseI	GCWGC	3 cut(s)	530, 623, 698
Tsp45I	GTSAC	1 cut(s)	767
TspDTI	ATGAA	7 cut(s)	162, 367, 535, 557, 581, 905, 951
TspGWI	ACGGA	2 cut(s)	85, 683
VpaK11BI	GGWCC	5 cut(s)	76, 284, 446, 989, 1097
VspI	ATTAAT	2 cut(s)	866, 947
XapI	RAATTY	2 cut(s)	20, 713
XbaI	TCTAGA	1 cut(s)	1006
XmiI	GTMKAC	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	1119
XspI	CTAG	5 cut(s)	488, 965, 974, 1007, 1214
ZrmI	AGTACT	1 cut(s)	1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.