Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004028

Physical Location & Seq

Genomic Coordinates Forward (+)

51217228 .. 51219093

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAAGAATTACGGATGGAGTCACCTCCTAAGGAGTCTGCAAGCCTCTTCAAAAGGGGATGGAACGCGTATTGGTTTTGTAGCAGCCAAGAGTACAGGCAAACTACCAGTTGGTGAAGCTACCATCCCTTCTAAAGAACAGATAGGGCAGTGTCTTCTCCACCAGAAAATTACCAACCTGACCCTTAGCCCAAGTATTGTATTTGGTTATTTACTAAAATCCCCCTTTGGCGGAGAAGAGTGGATCGTTAGTGTGGACGATTTGGAAGATATAATCGGAGGGCATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATCTGGCATATCTTAACCAAACCTTTTGCATGGGCTCGCCGTGCACTTGTATGGTCTGGAGAGGCTTACCTATCTTATAGTTTAGCCGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGCTTTGTTTGGTTCAATAATACCGCCTATCCTAGTGAGTTTTACGGGCCCACTGGACCCGAAGCTTCTCAAGCTCAAGCGTTTACTTTTTTGGTTAGAGACCAACGTCTTGGGGCTAACGTAGGATCTGCTCAAGGACCTACCGGTTTAGGTAAATATCTAATGCGTTCTCCGACTGGGGAAGTTCTTTTGGAGGAGAAACGCATAGTTTCTGGGATCTGCGTGCTCCCGGGATTCTTCCTATTCGTGGGGCATTTATGGCATGCGGGAAGGGCTCGTGCAGCTGCTGCCGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009539 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII

Protein Analysis

262

Amino Acids

28.44

Weight (kDa)

8.26

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII	PF00421	80 - 212	8.5e-40	Photosystem II protein
PSII	PF00421	223 - 258	1.4e-07	Photosystem II protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00270
malus_domestica	MD08G1154700.v1.1 MD09G1235700.v1.1
rosa_chinensis	RchiOBHm_Chr6g0258011 RchiOBHm_CPg0502321 RchiOBHm_CPg0502341 RchiOBHm_MTg0498861
rosa_laevigata	RLG00000000046 RLG00000000114 RLG00000000115 RLG00000000229 RLG00000000230 RLG00000000245 RLG00000000265 RLG00000000285 RLG00000000286 RLG00000000298 RLG00000000319 RLG00000000320 RLG00000000336 RLG00000000341 RLG00000000342 RLG00000001029
rosa_multiflora	Rmu_sc0000861.1_g000070 Rmu_sc0009742.1_g000009
rosa_roxburghii	Rroxscaffold_2G00119060 Rroxscaffold_2G00119340 Rroxscaffold_4G00315040
rosa_rugosa	Rorug06G0354500.1 RorugMtG0002000
rosa_samantha	Rh1BG017300 Rh5BG294500 Rh5DG304300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	307
AccII	CGCG	1 cut(s)	67
AciI	CCGC	4 cut(s)	231, 405, 459, 701
AclWI	GGATC	3 cut(s)	251, 568, 659
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	230, 682
AflIII	ACRYGT	1 cut(s)	65
AgeI	ACCGGT	1 cut(s)	578
AgsI	TTSAA	4 cut(s)	51, 451, 734, 758
AluBI	AGCT	4 cut(s)	119, 500, 509, 719
AluI	AGCT	4 cut(s)	119, 500, 509, 719
Alw21I	GWGCWC	2 cut(s)	364, 663
Alw26I	GTCTC	1 cut(s)	528
Alw44I	GTGCAC	1 cut(s)	360
AlwI	GGATC	3 cut(s)	251, 568, 659
AlwNI	CAGNNNCTG	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	664
AoxI	GGCC	1 cut(s)	482
ApaI	GGGCCC	1 cut(s)	486
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	4 cut(s)	83, 716, 719, 722
AsiGI	ACCGGT	1 cut(s)	578
Asp700I	GAANNNNTTC	1 cut(s)	762
AspS9I	GGNCC	4 cut(s)	482, 483, 491, 572
AsuC2I	CCSGG	2 cut(s)	665, 666
AsuHPI	GGTGA	2 cut(s)	14, 125
AvaI	CYCGRG	1 cut(s)	664
AvaII	GGWCC	2 cut(s)	491, 572
AxyI	CCTNAGG	1 cut(s)	29
BaeGI	GKGCMC	2 cut(s)	364, 486
BanII	GRGCYC	3 cut(s)	355, 486, 712
BauI	CACGAG	1 cut(s)	711
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	2 cut(s)	364, 663
BbvI	GCAGC	4 cut(s)	95, 706, 709, 728
BccI	CCATC	3 cut(s)	9, 53, 131
BceAI	ACGGC	1 cut(s)	342
BcnI	CCSGG	2 cut(s)	665, 666
BcoDI	GTCTC	1 cut(s)	528
BfaI	CTAG	1 cut(s)	468
BisI	GCNGC	5 cut(s)	84, 405, 717, 720, 723
BlsI	GCNGC	5 cut(s)	85, 406, 718, 721, 724
Bme1390I	CCNGG	2 cut(s)	665, 666
Bme18I	GGWCC	2 cut(s)	491, 572
BmeT110I	CYCGRG	1 cut(s)	664
BmgT120I	GGNCC	4 cut(s)	482, 483, 491, 572
BmiI	GGNNCC	3 cut(s)	298, 484, 493
BmrFI	CCNGG	2 cut(s)	665, 666
BmrI	ACTGGG	1 cut(s)	621
BmuI	ACTGGG	1 cut(s)	621
BoxI	GACNNNNGTC	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	185
BpuEI	CTTGAG	3 cut(s)	489, 495, 552
BpuMI	CCSGG	2 cut(s)	665, 666
BsaI	GGTCTC	1 cut(s)	528
BsaJI	CCNNGG	1 cut(s)	664
BsaWI	WCCGGW	1 cut(s)	578
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 682
Bse118I	RCCGGY	1 cut(s)	578
Bse1I	ACTGG	3 cut(s)	107, 493, 616
Bse21I	CCTNAGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	664
BseGI	GGATG	3 cut(s)	20, 64, 123
BseLI	CCNNNNNNNGG	2 cut(s)	230, 682
BseNI	ACTGG	3 cut(s)	107, 493, 616
BseRI	GAGGAG	2 cut(s)	644, 768
BseSI	GKGCMC	2 cut(s)	364, 486
BseXI	GCAGC	4 cut(s)	95, 706, 709, 728
BsgI	GTGCAG	1 cut(s)	735
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	484
BshTI	ACCGGT	1 cut(s)	578
BsiHKAI	GWGCWC	2 cut(s)	364, 663
BsiHKCI	CYCGRG	1 cut(s)	664
BsiSI	CCGG	3 cut(s)	579, 665, 726
BslI	CCNNNNNNNGG	2 cut(s)	230, 682
BsmAI	GTCTC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	484
Bso31I	GGTCTC	1 cut(s)	528
BsoBI	CYCGRG	1 cut(s)	664
Bsp120I	GGGCCC	1 cut(s)	482
Bsp1286I	GDGCHC	5 cut(s)	355, 364, 486, 663, 712
Bsp143I	GATC	4 cut(s)	243, 560, 651, 745
BspACI	CCGC	4 cut(s)	231, 405, 459, 701
BspANI	GGCC	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	3 cut(s)	298, 484, 493
BspPI	GGATC	3 cut(s)	251, 568, 659
BspTNI	GGTCTC	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	578
BsrI	ACTGG	3 cut(s)	107, 493, 616
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	1 cut(s)	664
BssMI	GATC	4 cut(s)	243, 560, 651, 745
BssNAI	GTATAC	1 cut(s)	308
BssSI	CACGAG	1 cut(s)	711
Bst1107I	GTATAC	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	711
Bst6I	CTCTTC	2 cut(s)	52, 231
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	4 cut(s)	42, 355, 659, 699
BstDEI	CTNAG	2 cut(s)	29, 185
BstF5I	GGATG	3 cut(s)	20, 64, 123
BstFNI	CGCG	1 cut(s)	67
BstKTI	GATC	4 cut(s)	246, 563, 654, 748
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	4 cut(s)	243, 560, 651, 745
BstMWI	GCNNNNNNNGC	6 cut(s)	359, 506, 694, 707, 716, 722
BstNSI	RCATGY	2 cut(s)	287, 701
BstPAI	GACNNNNGTC	1 cut(s)	540
BstSCI	CCNGG	2 cut(s)	663, 664
BstSLI	GKGCMC	2 cut(s)	364, 486
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	4 cut(s)	95, 706, 709, 728
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	2 cut(s)	560, 651
BstXI	CCANNNNNNTGG	1 cut(s)	545
BstYI	RGATCY	2 cut(s)	560, 651
BstZ17I	GTATAC	1 cut(s)	308
Bsu36I	CCTNAGG	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	484
BtsCI	GGATG	3 cut(s)	20, 64, 123
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	155, 486
Cac8I	GCNNGC	4 cut(s)	42, 355, 659, 699
CaiI	CAGNNNCTG	1 cut(s)	722
Cfr10I	RCCGGY	1 cut(s)	578
Cfr13I	GGNCC	4 cut(s)	482, 483, 491, 572
Cfr9I	CCCGGG	1 cut(s)	664
Csp6I	GTAC	1 cut(s)	93
CspAI	ACCGGT	1 cut(s)	578
CviAII	CATG	4 cut(s)	284, 348, 698, 772
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	2 cut(s)	29, 185
DpnI	GATC	4 cut(s)	245, 562, 653, 747
DpnII	GATC	4 cut(s)	243, 560, 651, 745
Eam1104I	CTCTTC	2 cut(s)	52, 231
EarI	CTCTTC	2 cut(s)	52, 231
EciI	GGCGGA	1 cut(s)	246
Eco24I	GRGCYC	3 cut(s)	355, 486, 712
Eco31I	GGTCTC	1 cut(s)	528
Eco47I	GGWCC	2 cut(s)	491, 572
Eco81I	CCTNAGG	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	664
EcoO109I	RGGNCCY	1 cut(s)	572
EcoT38I	GRGCYC	3 cut(s)	355, 486, 712
FaeI	CATG	4 cut(s)	287, 351, 701, 775
FatI	CATG	4 cut(s)	283, 347, 697, 771
FauI	CCCGC	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	307
Fnu4HI	GCNGC	5 cut(s)	84, 405, 717, 720, 723
FokI	GGATG	3 cut(s)	27, 71, 110
FriOI	GRGCYC	3 cut(s)	355, 486, 712
Fsp4HI	GCNGC	5 cut(s)	84, 405, 717, 720, 723
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	5 cut(s)	84, 405, 717, 720, 723
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	3 cut(s)	579, 665, 726
Hin1II	CATG	4 cut(s)	287, 351, 701, 775
HindIII	AAGCTT	1 cut(s)	498
HinfI	GANTC	5 cut(s)	19, 34, 318, 669, 775
HpaII	CCGG	3 cut(s)	579, 665, 726
HphI	GGTGA	2 cut(s)	14, 125
Hpy166II	GTNNAC	4 cut(s)	256, 308, 362, 519
Hpy188I	TCNGA	2 cut(s)	278, 609
Hpy188III	TCNNGA	2 cut(s)	375, 749
Hpy8I	GTNNAC	4 cut(s)	256, 308, 362, 519
HpyAV	CCTTC	2 cut(s)	138, 699
HpyCH4IV	ACGT	2 cut(s)	541, 555
HpyCH4V	TGCA	4 cut(s)	40, 347, 362, 716
HpyF10VI	GCNNNNNNNGC	6 cut(s)	359, 506, 694, 707, 716, 722
HpyF3I	CTNAG	2 cut(s)	29, 185
HpySE526I	ACGT	2 cut(s)	541, 555
Hsp92II	CATG	4 cut(s)	287, 351, 701, 775
Kzo9I	GATC	4 cut(s)	243, 560, 651, 745
LmnI	GCTCC	1 cut(s)	666
Lsp1109I	GCAGC	4 cut(s)	95, 706, 709, 728
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	2 cut(s)	541, 555
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	4 cut(s)	245, 562, 653, 747
MboI	GATC	4 cut(s)	243, 560, 651, 745
MboII	GAAGA	6 cut(s)	16, 39, 146, 248, 278, 664
MflI	RGATCY	2 cut(s)	560, 651
MhlI	GDGCHC	5 cut(s)	355, 364, 486, 663, 712
MluCI	AATT	3 cut(s)	7, 168, 741
MluI	ACGCGT	1 cut(s)	65
MlyI	GAGTC	3 cut(s)	28, 43, 769
MmeI	TCCRAC	1 cut(s)	632
MnlI	CCTC	6 cut(s)	35, 55, 272, 373, 622, 789
MroXI	GAANNNNTTC	1 cut(s)	762
MseI	TTAA	2 cut(s)	332, 783
MslI	CAYNNNNRTG	1 cut(s)	367
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	3 cut(s)	579, 665, 726
MspR9I	CCNGG	2 cut(s)	665, 666
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	6 cut(s)	359, 506, 694, 707, 716, 722
NciI	CCSGG	2 cut(s)	665, 666
NdeII	GATC	4 cut(s)	243, 560, 651, 745
NlaIII	CATG	4 cut(s)	287, 351, 701, 775
NlaIV	GGNNCC	3 cut(s)	298, 484, 493
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	2 cut(s)	287, 701
PaeI	GCATGC	1 cut(s)	701
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	2 cut(s)	318, 669
PinAI	ACCGGT	1 cut(s)	578
PkrI	GCNGC	5 cut(s)	85, 406, 718, 721, 724
PleI	GAGTC	3 cut(s)	27, 42, 769
PpsI	GAGTC	3 cut(s)	27, 42, 769
PpuMI	RGGWCCY	1 cut(s)	572
PshAI	GACNNNNGTC	1 cut(s)	540
Psp5II	RGGWCCY	1 cut(s)	572
PspN4I	GGNNCC	3 cut(s)	298, 484, 493
PspOMI	GGGCCC	1 cut(s)	482
PspPI	GGNCC	4 cut(s)	482, 483, 491, 572
PspPPI	RGGWCCY	1 cut(s)	572
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	2 cut(s)	560, 651
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	367
SaqAI	TTAA	2 cut(s)	332, 783
SatI	GCNGC	5 cut(s)	84, 405, 717, 720, 723
Sau3AI	GATC	4 cut(s)	243, 560, 651, 745
Sau96I	GGNCC	4 cut(s)	482, 483, 491, 572
SchI	GAGTC	3 cut(s)	28, 43, 769
ScrFI	CCNGG	2 cut(s)	665, 666
SduI	GDGCHC	5 cut(s)	355, 364, 486, 663, 712
SinI	GGWCC	2 cut(s)	491, 572
SmaI	CCCGGG	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	367
SmlI	CTYRAG	3 cut(s)	504, 510, 567
SmoI	CTYRAG	3 cut(s)	504, 510, 567
SphI	GCATGC	1 cut(s)	701
Sse9I	AATT	3 cut(s)	7, 168, 741
SsiI	CCGC	4 cut(s)	231, 405, 459, 701
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	2 cut(s)	663, 664
TaiI	ACGT	2 cut(s)	544, 558
TasI	AATT	3 cut(s)	7, 168, 741
TatI	WGTACW	1 cut(s)	92
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	318, 669
Tru1I	TTAA	2 cut(s)	332, 783
Tru9I	TTAA	2 cut(s)	332, 783
TscAI	CASTG	2 cut(s)	155, 493
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	4 cut(s)	83, 716, 719, 722
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	27
TspMI	CCCGGG	1 cut(s)	664
TspRI	CASTG	2 cut(s)	155, 493
VneI	GTGCAC	1 cut(s)	360
VpaK11BI	GGWCC	2 cut(s)	491, 572
XceI	RCATGY	2 cut(s)	287, 701
XmaI	CCCGGG	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	307
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.