Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0004028

Physical Location & Seq

Genomic Coordinates Reverse (-)

573821 .. 575045

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000114

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAACCTATTTGAAGTGGCTCATTTCGTACCAGAGAAGCCTATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCGGGTGGGGAAGTTCTAGACACCTTTCCATACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCTGCAGTATTGGGCTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACTCTTGAAGAATCTTTTCCATTTTTCGGTTATGTATGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACTTAATCTTGTTAGGCATAGGTGCTTTTCTTCTAGTATTCAAGGCTCTTTATTTTGGGGGTGTATATGATACTTGGGCTCCGGGTGGGGGAGATGTAAGAAAAATTACCAACCTAACCCTTAGCCCAAGTATTGTATTTGGTTATTTACTAAAATCCCCTTTTGGCGGAGAAGGGTGGATCGTTAGTGTGGACGATTTGGAAGATATAATCGGAGGGCATGTGTGGTTAGGTTCCATTTGTATACTTGGTGGAATCTGGCATATCTTAACCAAACCTTTTGCATGGGCTCGTCGTGCACTTGTATGGTCTGGAGAGGCTTACCTGTCTTATAGTTTAGCCGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGCTTTGTTTGGTTCAATAATACCGCCTATCCCAAACCTCTAAGGGGTCCTAATGGTTTGGACTTGAGTAGGCTGAAAAAAGACATACAGCCTTGGCAAGAGCGGCGTTCTGCGGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGTGGCGTAGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCTGCCGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009521 GO:0009523 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009539 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII

Protein Analysis

340

Amino Acids

37.24

Weight (kDa)

6.41

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII	PF00421	1 - 241	1e-61	Photosystem II protein
PSII	PF00421	235 - 335	1.3e-27	Photosystem II protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00270
malus_domestica	MD08G1154700.v1.1 MD09G1235700.v1.1
rosa_chinensis	RchiOBHm_Chr6g0258011 RchiOBHm_CPg0502321 RchiOBHm_CPg0502341 RchiOBHm_MTg0498861
rosa_laevigata	RLG00000000046 RLG00000000114 RLG00000000115 RLG00000000229 RLG00000000230 RLG00000000245 RLG00000000265 RLG00000000285 RLG00000000286 RLG00000000298 RLG00000000319 RLG00000000320 RLG00000000336 RLG00000000341 RLG00000000342 RLG00000001029
rosa_multiflora	Rmu_sc0000861.1_g000070 Rmu_sc0009742.1_g000009
rosa_roxburghii	Rroxscaffold_2G00119060 Rroxscaffold_2G00119340 Rroxscaffold_4G00315040
rosa_rugosa	Rorug06G0354500.1 RorugMtG0002000
rosa_samantha	Rh1BG017300 Rh5BG294500 Rh5DG304300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	766
AccI	GTMKAC	1 cut(s)	535
AciI	CCGC	6 cut(s)	186, 459, 633, 687, 766, 776
AclWI	GGATC	1 cut(s)	479
AcsI	RAATTY	1 cut(s)	811
AfaI	GTAC	2 cut(s)	30, 150
AfiI	CCNNNNNNNGG	4 cut(s)	242, 380, 458, 707
AgsI	TTSAA	6 cut(s)	14, 224, 334, 679, 965, 989
AluBI	AGCT	3 cut(s)	80, 830, 950
AluI	AGCT	3 cut(s)	80, 830, 950
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	2 cut(s)	209, 862
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	953
Ama87I	CYCGRG	1 cut(s)	212
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	3 cut(s)	947, 950, 953
ApoI	RAATTY	1 cut(s)	811
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
AseI	ATTAAT	1 cut(s)	59
Asp700I	GAANNNNTTC	2 cut(s)	231, 993
AspS9I	GGNCC	3 cut(s)	101, 209, 710
AsuC2I	CCSGG	2 cut(s)	105, 375
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	3 cut(s)	101, 209, 710
BaeGI	GKGCMC	1 cut(s)	592
BanII	GRGCYC	3 cut(s)	373, 583, 943
BauI	CACGAG	1 cut(s)	942
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	3 cut(s)	937, 940, 959
BcgI	CGANNNNNNTGC	2 cut(s)	824, 858
BcnI	CCSGG	2 cut(s)	105, 375
BcoDI	GTCTC	2 cut(s)	209, 862
BfaI	CTAG	6 cut(s)	77, 86, 119, 326, 864, 896
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	5 cut(s)	633, 767, 948, 951, 954
BlsI	GCNGC	5 cut(s)	634, 768, 949, 952, 955
BmcAI	AGTACT	1 cut(s)	150
Bme1390I	CCNGG	2 cut(s)	105, 375
Bme18I	GGWCC	3 cut(s)	101, 209, 710
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	3 cut(s)	101, 209, 710
BmiI	GGNNCC	5 cut(s)	210, 211, 372, 526, 711
BmrFI	CCNGG	2 cut(s)	105, 375
BpmI	CTGGAG	2 cut(s)	165, 624
Bpu10I	CCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	748
BpuMI	CCSGG	2 cut(s)	105, 375
BsaJI	CCNNGG	2 cut(s)	755, 816
BsaXI	ACNNNNNCTCC	6 cut(s)	355, 385, 498, 528, 778, 808
Bsc4I	CCNNNNNNNGG	4 cut(s)	242, 380, 458, 707
BseDI	CCNNGG	2 cut(s)	755, 816
BseLI	CCNNNNNNNGG	4 cut(s)	242, 380, 458, 707
BseRI	GAGGAG	1 cut(s)	999
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	3 cut(s)	937, 940, 959
BsgI	GTGCAG	1 cut(s)	966
BsiHKAI	GWGCWC	1 cut(s)	592
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	104, 374, 957
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	4 cut(s)	242, 380, 458, 707
BsmAI	GTCTC	2 cut(s)	209, 862
BsmFI	GGGAC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	4 cut(s)	373, 583, 592, 943
Bsp143I	GATC	3 cut(s)	471, 837, 976
BspACI	CCGC	6 cut(s)	186, 459, 633, 687, 766, 776
BspLI	GGNNCC	5 cut(s)	210, 211, 372, 526, 711
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	479
BsrBI	CCGCTC	1 cut(s)	766
BssECI	CCNNGG	2 cut(s)	755, 816
BssMI	GATC	3 cut(s)	471, 837, 976
BssNAI	GTATAC	1 cut(s)	536
BssSI	CACGAG	1 cut(s)	942
BssT1I	CCWWGG	1 cut(s)	755
Bst1107I	GTATAC	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	942
BstAPI	GCANNNNNTGC	1 cut(s)	953
BstC8I	GCNNGC	1 cut(s)	930
BstDEI	CTNAG	2 cut(s)	413, 704
BstDSI	CCRYGG	1 cut(s)	816
BstKTI	GATC	3 cut(s)	474, 840, 979
BstMAI	GTCTC	2 cut(s)	209, 862
BstMBI	GATC	3 cut(s)	471, 837, 976
BstMWI	GCNNNNNNNGC	5 cut(s)	587, 766, 938, 947, 953
BstNSI	RCATGY	2 cut(s)	515, 932
BstSCI	CCNGG	2 cut(s)	103, 373
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	3 cut(s)	937, 940, 959
BstZ17I	GTATAC	1 cut(s)	536
BtgI	CCRYGG	1 cut(s)	816
Cac8I	GCNNGC	1 cut(s)	930
CaiI	CAGNNNCTG	1 cut(s)	953
Cfr13I	GGNCC	3 cut(s)	101, 209, 710
Csp6I	GTAC	2 cut(s)	29, 149
CviAII	CATG	6 cut(s)	197, 512, 576, 791, 929, 1003
CviQI	GTAC	2 cut(s)	29, 149
DdeI	CTNAG	2 cut(s)	413, 704
DpnI	GATC	3 cut(s)	473, 839, 978
DpnII	GATC	3 cut(s)	471, 837, 976
DraI	TTTAAA	1 cut(s)	810
EciI	GGCGGA	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	755
Eco24I	GRGCYC	3 cut(s)	373, 583, 943
Eco47I	GGWCC	3 cut(s)	101, 209, 710
Eco88I	CYCGRG	1 cut(s)	212
EcoO109I	RGGNCCY	2 cut(s)	209, 710
EcoT14I	CCWWGG	1 cut(s)	755
EcoT38I	GRGCYC	3 cut(s)	373, 583, 943
ErhI	CCWWGG	1 cut(s)	755
FaeI	CATG	6 cut(s)	200, 515, 579, 794, 932, 1006
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	6 cut(s)	196, 511, 575, 790, 928, 1002
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	5 cut(s)	633, 767, 948, 951, 954
FriOI	GRGCYC	3 cut(s)	373, 583, 943
Fsp4HI	GCNGC	5 cut(s)	633, 767, 948, 951, 954
FspBI	CTAG	6 cut(s)	77, 86, 119, 326, 864, 896
GluI	GCNGC	5 cut(s)	633, 767, 948, 951, 954
GsuI	CTGGAG	2 cut(s)	165, 624
HapII	CCGG	3 cut(s)	104, 374, 957
Hin1II	CATG	6 cut(s)	200, 515, 579, 794, 932, 1006
HinfI	GANTC	6 cut(s)	217, 227, 546, 787, 900, 1006
HpaII	CCGG	3 cut(s)	104, 374, 957
Hpy166II	GTNNAC	3 cut(s)	484, 536, 590
Hpy188I	TCNGA	1 cut(s)	506
Hpy188III	TCNNGA	5 cut(s)	119, 144, 221, 603, 980
Hpy8I	GTNNAC	3 cut(s)	484, 536, 590
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	2 cut(s)	458, 930
HpyCH4V	TGCA	7 cut(s)	170, 200, 575, 590, 845, 932, 947
HpyF10VI	GCNNNNNNNGC	5 cut(s)	587, 766, 938, 947, 953
HpyF3I	CTNAG	2 cut(s)	413, 704
Hsp92II	CATG	6 cut(s)	200, 515, 579, 794, 932, 1006
KflI	GGGWCCC	1 cut(s)	209
Kzo9I	GATC	3 cut(s)	471, 837, 976
LmnI	GCTCC	2 cut(s)	376, 799
Lsp1109I	GCAGC	3 cut(s)	937, 940, 959
MaeI	CTAG	6 cut(s)	77, 86, 119, 326, 864, 896
MalI	GATC	3 cut(s)	473, 839, 978
MbiI	CCGCTC	1 cut(s)	766
MboI	GATC	3 cut(s)	471, 837, 976
MboII	GAAGA	4 cut(s)	236, 314, 506, 895
MhlI	GDGCHC	4 cut(s)	373, 583, 592, 943
MluCI	AATT	7 cut(s)	60, 159, 279, 396, 811, 850, 972
MlyI	GAGTC	3 cut(s)	211, 781, 1000
MnlI	CCTC	5 cut(s)	175, 500, 601, 711, 1020
MroXI	GAANNNNTTC	2 cut(s)	231, 993
MseI	TTAA	6 cut(s)	59, 158, 296, 560, 809, 1014
MslI	CAYNNNNRTG	1 cut(s)	595
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	3 cut(s)	104, 374, 957
MspR9I	CCNGG	2 cut(s)	105, 375
MwoI	GCNNNNNNNGC	5 cut(s)	587, 766, 938, 947, 953
NciI	CCSGG	2 cut(s)	105, 375
NdeII	GATC	3 cut(s)	471, 837, 976
NlaIII	CATG	6 cut(s)	200, 515, 579, 794, 932, 1006
NlaIV	GGNNCC	5 cut(s)	210, 211, 372, 526, 711
NspI	RCATGY	2 cut(s)	515, 932
PaeI	GCATGC	1 cut(s)	932
PdmI	GAANNNNTTC	2 cut(s)	231, 993
PfeI	GAWTC	3 cut(s)	227, 546, 900
PkrI	GCNGC	5 cut(s)	634, 768, 949, 952, 955
PleI	GAGTC	3 cut(s)	211, 781, 1000
PpsI	GAGTC	3 cut(s)	211, 781, 1000
PpuMI	RGGWCCY	2 cut(s)	209, 710
PshBI	ATTAAT	1 cut(s)	59
Psp5II	RGGWCCY	2 cut(s)	209, 710
PspN4I	GGNNCC	5 cut(s)	210, 211, 372, 526, 711
PspPI	GGNCC	3 cut(s)	101, 209, 710
PspPPI	RGGWCCY	2 cut(s)	209, 710
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	953
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	2 cut(s)	30, 150
RsaNI	GTAC	2 cut(s)	29, 149
RseI	CAYNNNNRTG	1 cut(s)	595
SaqAI	TTAA	6 cut(s)	59, 158, 296, 560, 809, 1014
SatI	GCNGC	5 cut(s)	633, 767, 948, 951, 954
Sau3AI	GATC	3 cut(s)	471, 837, 976
Sau96I	GGNCC	3 cut(s)	101, 209, 710
ScaI	AGTACT	1 cut(s)	150
SchI	GAGTC	3 cut(s)	211, 781, 1000
ScrFI	CCNGG	2 cut(s)	105, 375
SduI	GDGCHC	4 cut(s)	373, 583, 592, 943
SfcI	CTRYAG	1 cut(s)	168
SinI	GGWCC	3 cut(s)	101, 209, 710
SmiMI	CAYNNNNRTG	1 cut(s)	595
SmlI	CTYRAG	1 cut(s)	727
SmoI	CTYRAG	1 cut(s)	727
SphI	GCATGC	1 cut(s)	932
Sse9I	AATT	7 cut(s)	60, 159, 279, 396, 811, 850, 972
SsiI	CCGC	6 cut(s)	186, 459, 633, 687, 766, 776
SspMI	CTAG	6 cut(s)	77, 86, 119, 326, 864, 896
StyD4I	CCNGG	2 cut(s)	103, 373
StyI	CCWWGG	1 cut(s)	755
TasI	AATT	7 cut(s)	60, 159, 279, 396, 811, 850, 972
TatI	WGTACW	1 cut(s)	148
TauI	GCSGC	2 cut(s)	635, 769
TfiI	GAWTC	3 cut(s)	227, 546, 900
Tru1I	TTAA	6 cut(s)	59, 158, 296, 560, 809, 1014
Tru9I	TTAA	6 cut(s)	59, 158, 296, 560, 809, 1014
TseI	GCWGC	3 cut(s)	947, 950, 953
TspDTI	ATGAA	2 cut(s)	17, 63
TspGWI	ACGGA	1 cut(s)	805
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	3 cut(s)	101, 209, 710
VspI	ATTAAT	1 cut(s)	59
XapI	RAATTY	1 cut(s)	811
XbaI	TCTAGA	1 cut(s)	118
XceI	RCATGY	2 cut(s)	515, 932
XmiI	GTMKAC	1 cut(s)	535
XmnI	GAANNNNTTC	2 cut(s)	231, 993
XspI	CTAG	6 cut(s)	77, 86, 119, 326, 864, 896
ZrmI	AGTACT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.