RchiOBHm_Chr6g0258011

One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004028
Physical Location & Seq
Reverse (-)
13457351 .. 13458427
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23135

Sequence Viewer

Length: 774 bp
ATGGATGTAGACAGGGCATGGATCGTTAGTGTGGACGATTTGGAAGATATAATCGGAGGGCATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATCTGGCATATCTTAACCAAACCTTTTGCATGGGCTCGCCGTGCACTTGTATGGTCTGGAGAGGCTTACCTATCTTATAGTTTAGCCGCTTTATATGTTTTTGGTTTTATTGCTTGTTGCTTTGTTTGGTTCAATAATACCGCCTATCCTAGTGAGTTTTACGGGCCCACTGGACCCGAAGCTTCTCAAGCTCAAGCGTTTACTTTTTTGGTTAGAGACCAACGTCTTGGGGCTAACGTAGGATCTGCTCAAGGACCTACCGGTTTAGGTAAATATCTAATGCGTTCTCCGACTGGGGAAGTTCTTTTTGGAGGAGAAACGCATAGTTTCTGGGATCTGCGTGCTCCCTGGTTAGAACCTCTAAGGGGTCCTAATGGTTTGGACTTGAGTAGGCTGAAAAAAGACATACAGCCTTGGCAAGAGCGGCGTTCTGCGGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGTGGCGTAGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTGGGGCATTTATGGCATGCGGGAAGGGCTCGTGCAGCTGCTGCCGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PSII

Protein Analysis

257

Amino Acids

28.41

Weight (kDa)

6.15

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSII PF00421 17 - 253 2.8e-75 Photosystem II protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 520
AccI GTMKAC 2 cut(s) 9, 85
AciI CCGC 5 cut(s) 183, 237, 520, 530, 686
AclWI GGATC 3 cut(s) 29, 346, 438
AcsI RAATTY 1 cut(s) 565
AfiI CCNNNNNNNGG 2 cut(s) 461, 667
AgeI ACCGGT 1 cut(s) 356
AgsI TTSAA 3 cut(s) 229, 719, 743
AjnI CCWGG 1 cut(s) 443
AjuI GAANNNNNNNTTGG 2 cut(s) 387, 419
AluBI AGCT 5 cut(s) 278, 287, 584, 632, 704
AluI AGCT 5 cut(s) 278, 287, 584, 632, 704
Alw21I GWGCWC 2 cut(s) 142, 442
Alw26I GTCTC 2 cut(s) 306, 616
Alw44I GTGCAC 1 cut(s) 138
AlwI GGATC 3 cut(s) 29, 346, 438
AlwNI CAGNNNCTG 1 cut(s) 707
AoxI GGCC 1 cut(s) 260
ApaI GGGCCC 1 cut(s) 264
ApaLI GTGCAC 1 cut(s) 138
ApeKI GCWGC 3 cut(s) 701, 704, 707
ApoI RAATTY 1 cut(s) 565
AsiGI ACCGGT 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 747
AspS9I GGNCC 5 cut(s) 260, 261, 269, 350, 464
AvaII GGWCC 3 cut(s) 269, 350, 464
BaeGI GKGCMC 2 cut(s) 142, 264
BanII GRGCYC 3 cut(s) 133, 264, 697
BauI CACGAG 1 cut(s) 696
Bbv12I GWGCWC 2 cut(s) 142, 442
BbvI GCAGC 3 cut(s) 691, 694, 713
BceAI ACGGC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciT130I CCWGG 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 306, 616
BfaI CTAG 3 cut(s) 246, 618, 650
BisI GCNGC 5 cut(s) 183, 521, 702, 705, 708
BlsI GCNGC 5 cut(s) 184, 522, 703, 706, 709
Bme1390I CCNGG 1 cut(s) 445
Bme18I GGWCC 3 cut(s) 269, 350, 464
BmgT120I GGNCC 5 cut(s) 260, 261, 269, 350, 464
BmiI GGNNCC 4 cut(s) 76, 262, 271, 465
BmrFI CCNGG 1 cut(s) 445
BmrI ACTGGG 1 cut(s) 399
BmuI ACTGGG 1 cut(s) 399
BoxI GACNNNNGTC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 4 cut(s) 267, 273, 330, 502
BsaI GGTCTC 1 cut(s) 306
BsaJI CCNNGG 3 cut(s) 443, 509, 570
BsaWI WCCGGW 1 cut(s) 356
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 532, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 461, 667
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 2 cut(s) 271, 394
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 3 cut(s) 443, 509, 570
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 461, 667
BseNI ACTGG 2 cut(s) 271, 394
BseRI GAGGAG 2 cut(s) 423, 753
BseSI GKGCMC 2 cut(s) 142, 264
BseXI GCAGC 3 cut(s) 691, 694, 713
BsgI GTGCAG 1 cut(s) 720
BshFI GGCC 1 cut(s) 262
BshTI ACCGGT 1 cut(s) 356
BsiHKAI GWGCWC 2 cut(s) 142, 442
BsiSI CCGG 2 cut(s) 357, 711
BslI CCNNNNNNNGG 2 cut(s) 461, 667
BsmAI GTCTC 2 cut(s) 306, 616
BsnI GGCC 1 cut(s) 262
Bso31I GGTCTC 1 cut(s) 306
Bsp120I GGGCCC 1 cut(s) 260
Bsp1286I GDGCHC 5 cut(s) 133, 142, 264, 442, 697
Bsp143I GATC 5 cut(s) 21, 338, 430, 591, 730
BspACI CCGC 5 cut(s) 183, 237, 520, 530, 686
BspANI GGCC 1 cut(s) 262
BspLI GGNNCC 4 cut(s) 76, 262, 271, 465
BspPI GGATC 3 cut(s) 29, 346, 438
BspTNI GGTCTC 1 cut(s) 306
BsrBI CCGCTC 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 2 cut(s) 271, 394
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 443, 509, 570
BssMI GATC 5 cut(s) 21, 338, 430, 591, 730
BssNAI GTATAC 1 cut(s) 86
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 509
Bst1107I GTATAC 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 696
Bst2UI CCWGG 1 cut(s) 445
BstAPI GCANNNNNTGC 1 cut(s) 707
BstC8I GCNNGC 3 cut(s) 133, 438, 684
BstDEI CTNAG 1 cut(s) 458
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 5 cut(s) 24, 341, 433, 594, 733
BstMAI GTCTC 2 cut(s) 306, 616
BstMBI GATC 5 cut(s) 21, 338, 430, 591, 730
BstMWI GCNNNNNNNGC 7 cut(s) 137, 284, 520, 679, 692, 701, 707
BstNI CCWGG 1 cut(s) 445
BstNSI RCATGY 2 cut(s) 65, 686
BstPAI GACNNNNGTC 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 443
BstSLI GKGCMC 2 cut(s) 142, 264
BstV1I GCAGC 3 cut(s) 691, 694, 713
BstX2I RGATCY 2 cut(s) 338, 430
BstXI CCANNNNNNTGG 1 cut(s) 323
BstYI RGATCY 2 cut(s) 338, 430
BstZ17I GTATAC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 3 cut(s) 133, 438, 684
CaiI CAGNNNCTG 1 cut(s) 707
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 5 cut(s) 260, 261, 269, 350, 464
CspAI ACCGGT 1 cut(s) 356
CviAII CATG 6 cut(s) 18, 62, 126, 545, 683, 757
DdeI CTNAG 1 cut(s) 458
DpnI GATC 5 cut(s) 23, 340, 432, 593, 732
DpnII GATC 5 cut(s) 21, 338, 430, 591, 730
DraI TTTAAA 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 509
Eco24I GRGCYC 3 cut(s) 133, 264, 697
Eco31I GGTCTC 1 cut(s) 306
Eco47I GGWCC 3 cut(s) 269, 350, 464
EcoO109I RGGNCCY 2 cut(s) 350, 464
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 509
EcoT38I GRGCYC 3 cut(s) 133, 264, 697
ErhI CCWWGG 1 cut(s) 509
FaeI CATG 6 cut(s) 21, 65, 129, 548, 686, 760
FatI CATG 6 cut(s) 17, 61, 125, 544, 682, 756
FauI CCCGC 1 cut(s) 679
FblI GTMKAC 2 cut(s) 9, 85
Fnu4HI GCNGC 5 cut(s) 183, 521, 702, 705, 708
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 3 cut(s) 133, 264, 697
Fsp4HI GCNGC 5 cut(s) 183, 521, 702, 705, 708
FspBI CTAG 3 cut(s) 246, 618, 650
GluI GCNGC 5 cut(s) 183, 521, 702, 705, 708
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 1 cut(s) 262
HapII CCGG 2 cut(s) 357, 711
Hin1II CATG 6 cut(s) 21, 65, 129, 548, 686, 760
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 3 cut(s) 96, 654, 760
HpaII CCGG 2 cut(s) 357, 711
Hpy166II GTNNAC 5 cut(s) 10, 34, 86, 140, 297
Hpy188I TCNGA 2 cut(s) 56, 387
Hpy188III TCNNGA 2 cut(s) 153, 734
Hpy8I GTNNAC 5 cut(s) 10, 34, 86, 140, 297
HpyAV CCTTC 1 cut(s) 684
HpyCH4IV ACGT 2 cut(s) 319, 333
HpyCH4V TGCA 4 cut(s) 125, 140, 599, 701
HpyF10VI GCNNNNNNNGC 7 cut(s) 137, 284, 520, 679, 692, 701, 707
HpyF3I CTNAG 1 cut(s) 458
HpySE526I ACGT 2 cut(s) 319, 333
Hsp92II CATG 6 cut(s) 21, 65, 129, 548, 686, 760
Kzo9I GATC 5 cut(s) 21, 338, 430, 591, 730
LmnI GCTCC 2 cut(s) 445, 553
Lsp1109I GCAGC 3 cut(s) 691, 694, 713
MaeI CTAG 3 cut(s) 246, 618, 650
MaeII ACGT 2 cut(s) 319, 333
MalI GATC 5 cut(s) 23, 340, 432, 593, 732
MbiI CCGCTC 1 cut(s) 520
MboI GATC 5 cut(s) 21, 338, 430, 591, 730
MboII GAAGA 2 cut(s) 56, 649
MflI RGATCY 2 cut(s) 338, 430
MhlI GDGCHC 5 cut(s) 133, 142, 264, 442, 697
MluCI AATT 3 cut(s) 565, 604, 726
MlyI GAGTC 1 cut(s) 754
MmeI TCCRAC 1 cut(s) 410
MnlI CCTC 5 cut(s) 50, 151, 401, 465, 774
MroXI GAANNNNTTC 1 cut(s) 747
MseI TTAA 3 cut(s) 110, 563, 768
MslI CAYNNNNRTG 1 cut(s) 145
MspA1I CMGCKG 1 cut(s) 704
MspI CCGG 2 cut(s) 357, 711
MspR9I CCNGG 1 cut(s) 445
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 7 cut(s) 137, 284, 520, 679, 692, 701, 707
NdeII GATC 5 cut(s) 21, 338, 430, 591, 730
NlaIII CATG 6 cut(s) 21, 65, 129, 548, 686, 760
NlaIV GGNNCC 4 cut(s) 76, 262, 271, 465
NspI RCATGY 2 cut(s) 65, 686
PaeI GCATGC 1 cut(s) 686
PdmI GAANNNNTTC 1 cut(s) 747
PfeI GAWTC 2 cut(s) 96, 654
PinAI ACCGGT 1 cut(s) 356
PkrI GCNGC 5 cut(s) 184, 522, 703, 706, 709
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
PpuMI RGGWCCY 2 cut(s) 350, 464
PshAI GACNNNNGTC 1 cut(s) 318
Psp5II RGGWCCY 2 cut(s) 350, 464
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 4 cut(s) 76, 262, 271, 465
PspOMI GGGCCC 1 cut(s) 260
PspPI GGNCC 5 cut(s) 260, 261, 269, 350, 464
PspPPI RGGWCCY 2 cut(s) 350, 464
PstNI CAGNNNCTG 1 cut(s) 707
PsuI RGATCY 2 cut(s) 338, 430
PvuII CAGCTG 1 cut(s) 704
RseI CAYNNNNRTG 1 cut(s) 145
SaqAI TTAA 3 cut(s) 110, 563, 768
SatI GCNGC 5 cut(s) 183, 521, 702, 705, 708
Sau3AI GATC 5 cut(s) 21, 338, 430, 591, 730
Sau96I GGNCC 5 cut(s) 260, 261, 269, 350, 464
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 5 cut(s) 133, 142, 264, 442, 697
SinI GGWCC 3 cut(s) 269, 350, 464
SmiMI CAYNNNNRTG 1 cut(s) 145
SmlI CTYRAG 4 cut(s) 282, 288, 345, 481
SmoI CTYRAG 4 cut(s) 282, 288, 345, 481
SphI GCATGC 1 cut(s) 686
Sse9I AATT 3 cut(s) 565, 604, 726
SsiI CCGC 5 cut(s) 183, 237, 520, 530, 686
SspMI CTAG 3 cut(s) 246, 618, 650
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 1 cut(s) 509
TaiI ACGT 2 cut(s) 322, 336
TasI AATT 3 cut(s) 565, 604, 726
TauI GCSGC 2 cut(s) 185, 523
TfiI GAWTC 2 cut(s) 96, 654
Tru1I TTAA 3 cut(s) 110, 563, 768
Tru9I TTAA 3 cut(s) 110, 563, 768
TscAI CASTG 1 cut(s) 271
TseI GCWGC 3 cut(s) 701, 704, 707
TspGWI ACGGA 1 cut(s) 559
TspRI CASTG 1 cut(s) 271
VneI GTGCAC 1 cut(s) 138
VpaK11BI GGWCC 3 cut(s) 269, 350, 464
XapI RAATTY 1 cut(s) 565
XceI RCATGY 2 cut(s) 65, 686
XmiI GTMKAC 2 cut(s) 9, 85
XmnI GAANNNNTTC 1 cut(s) 747
XspI CTAG 3 cut(s) 246, 618, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.