Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00270 |
| malus_domestica | MD08G1154700.v1.1 MD09G1235700.v1.1 |
| rosa_chinensis | RchiOBHm_Chr6g0258011 RchiOBHm_CPg0502321 RchiOBHm_CPg0502341 RchiOBHm_MTg0498861 |
| rosa_laevigata | RLG00000000046 RLG00000000114 RLG00000000115 RLG00000000229 RLG00000000230 RLG00000000245 RLG00000000265 RLG00000000285 RLG00000000286 RLG00000000298 RLG00000000319 RLG00000000320 RLG00000000336 RLG00000000341 RLG00000000342 RLG00000001029 |
| rosa_multiflora | Rmu_sc0000861.1_g000070 Rmu_sc0009742.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00119060 Rroxscaffold_2G00119340 Rroxscaffold_4G00315040 |
| rosa_rugosa | Rorug06G0354500.1 RorugMtG0002000 |
| rosa_samantha | Rh1BG017300 Rh5BG294500 Rh5DG304300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 179 |
| AccBSI | CCGCTC | 1 cut(s) | 68 |
| AciI | CCGC | 3 cut(s) | 48, 66, 258 |
| AcuI | CTGAAG | 1 cut(s) | 30 |
| AgsI | TTSAA | 3 cut(s) | 116, 134, 166 |
| AjnI | CCWGG | 1 cut(s) | 260 |
| ApeKI | GCWGC | 1 cut(s) | 254 |
| AspLEI | GCGC | 1 cut(s) | 16 |
| AspS9I | GGNCC | 1 cut(s) | 5 |
| AsuHPI | GGTGA | 2 cut(s) | 248, 314 |
| AvaII | GGWCC | 1 cut(s) | 5 |
| BauI | CACGAG | 1 cut(s) | 151 |
| BbvI | GCAGC | 1 cut(s) | 266 |
| BciT130I | CCWGG | 1 cut(s) | 262 |
| BciVI | GTATCC | 1 cut(s) | 275 |
| BclI | TGATCA | 1 cut(s) | 189 |
| BfuI | GTATCC | 1 cut(s) | 275 |
| BisI | GCNGC | 3 cut(s) | 66, 255, 258 |
| BlsI | GCNGC | 3 cut(s) | 67, 256, 259 |
| Bme1390I | CCNGG | 1 cut(s) | 262 |
| Bme18I | GGWCC | 1 cut(s) | 5 |
| BmgT120I | GGNCC | 1 cut(s) | 5 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 1 cut(s) | 262 |
| Bsa29I | ATCGAT | 1 cut(s) | 222 |
| BseBI | CCWGG | 1 cut(s) | 262 |
| BseCI | ATCGAT | 1 cut(s) | 222 |
| BseXI | GCAGC | 1 cut(s) | 266 |
| BshVI | ATCGAT | 1 cut(s) | 222 |
| BslFI | GGGAC | 1 cut(s) | 18 |
| BsmFI | GGGAC | 1 cut(s) | 18 |
| Bsp143I | GATC | 3 cut(s) | 125, 157, 189 |
| BspACI | CCGC | 3 cut(s) | 48, 66, 258 |
| BspDI | ATCGAT | 1 cut(s) | 222 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BsrBI | CCGCTC | 1 cut(s) | 68 |
| BssMI | GATC | 3 cut(s) | 125, 157, 189 |
| BssSI | CACGAG | 1 cut(s) | 151 |
| Bst2BI | CACGAG | 1 cut(s) | 151 |
| Bst2UI | CCWGG | 1 cut(s) | 262 |
| BstC8I | GCNNGC | 1 cut(s) | 252 |
| BstHHI | GCGC | 1 cut(s) | 16 |
| BstKTI | GATC | 3 cut(s) | 128, 160, 192 |
| BstMBI | GATC | 3 cut(s) | 125, 157, 189 |
| BstNI | CCWGG | 1 cut(s) | 262 |
| BstSCI | CCNGG | 1 cut(s) | 260 |
| BstV1I | GCAGC | 1 cut(s) | 266 |
| Bsu15I | ATCGAT | 1 cut(s) | 222 |
| BsuI | GTATCC | 1 cut(s) | 275 |
| BsuTUI | ATCGAT | 1 cut(s) | 222 |
| Cac8I | GCNNGC | 1 cut(s) | 252 |
| CfoI | GCGC | 1 cut(s) | 16 |
| Cfr13I | GGNCC | 1 cut(s) | 5 |
| ClaI | ATCGAT | 1 cut(s) | 222 |
| CviAII | CATG | 2 cut(s) | 74, 100 |
| CviJI | RGCY | 3 cut(s) | 233, 257, 299 |
| CviKI_1 | RGCY | 3 cut(s) | 233, 257, 299 |
| DpnI | GATC | 3 cut(s) | 127, 159, 191 |
| DpnII | GATC | 3 cut(s) | 125, 157, 189 |
| Eco47I | GGWCC | 1 cut(s) | 5 |
| Eco57I | CTGAAG | 1 cut(s) | 30 |
| EcoO109I | RGGNCCY | 1 cut(s) | 5 |
| EcoRII | CCWGG | 1 cut(s) | 260 |
| FaeI | CATG | 2 cut(s) | 77, 103 |
| FaiI | YATR | 3 cut(s) | 75, 101, 179 |
| FaqI | GGGAC | 1 cut(s) | 18 |
| FatI | CATG | 2 cut(s) | 73, 99 |
| FbaI | TGATCA | 1 cut(s) | 189 |
| Fnu4HI | GCNGC | 3 cut(s) | 66, 255, 258 |
| Fsp4HI | GCNGC | 3 cut(s) | 66, 255, 258 |
| GlaI | GCGC | 1 cut(s) | 15 |
| GluI | GCNGC | 3 cut(s) | 66, 255, 258 |
| HhaI | GCGC | 1 cut(s) | 16 |
| Hin1II | CATG | 2 cut(s) | 77, 103 |
| Hin6I | GCGC | 1 cut(s) | 14 |
| HinP1I | GCGC | 1 cut(s) | 14 |
| HinfI | GANTC | 3 cut(s) | 149, 213, 239 |
| HphI | GGTGA | 2 cut(s) | 248, 314 |
| Hpy166II | GTNNAC | 1 cut(s) | 57 |
| Hpy188I | TCNGA | 1 cut(s) | 86 |
| Hpy8I | GTNNAC | 1 cut(s) | 57 |
| HpyCH4IV | ACGT | 1 cut(s) | 106 |
| HpyCH4V | TGCA | 1 cut(s) | 184 |
| HpySE526I | ACGT | 1 cut(s) | 106 |
| Hsp92II | CATG | 2 cut(s) | 77, 103 |
| HspAI | GCGC | 1 cut(s) | 14 |
| Ksp22I | TGATCA | 1 cut(s) | 189 |
| Kzo9I | GATC | 3 cut(s) | 125, 157, 189 |
| LpnPI | CCDG | 6 cut(s) | 21, 30, 219, 247, 274, 285 |
| Lsp1109I | GCAGC | 1 cut(s) | 266 |
| MaeII | ACGT | 1 cut(s) | 106 |
| MaeIII | GTNAC | 1 cut(s) | 102 |
| MalI | GATC | 3 cut(s) | 127, 159, 191 |
| MbiI | CCGCTC | 1 cut(s) | 68 |
| MboI | GATC | 3 cut(s) | 125, 157, 189 |
| MboII | GAAGA | 1 cut(s) | 208 |
| MfeI | CAATTG | 3 cut(s) | 134, 166, 185 |
| MluCI | AATT | 5 cut(s) | 110, 134, 166, 185, 306 |
| MlyI | GAGTC | 1 cut(s) | 143 |
| MspR9I | CCNGG | 1 cut(s) | 262 |
| MunI | CAATTG | 3 cut(s) | 134, 166, 185 |
| MvaI | CCWGG | 1 cut(s) | 262 |
| NdeII | GATC | 3 cut(s) | 125, 157, 189 |
| NlaIII | CATG | 2 cut(s) | 77, 103 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| PfeI | GAWTC | 2 cut(s) | 213, 239 |
| PkrI | GCNGC | 3 cut(s) | 67, 256, 259 |
| PleI | GAGTC | 1 cut(s) | 143 |
| PpsI | GAGTC | 1 cut(s) | 143 |
| PpuMI | RGGWCCY | 1 cut(s) | 5 |
| PsiI | TTATAA | 1 cut(s) | 179 |
| Psp5II | RGGWCCY | 1 cut(s) | 5 |
| Psp6I | CCWGG | 1 cut(s) | 260 |
| PspGI | CCWGG | 1 cut(s) | 260 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 1 cut(s) | 5 |
| PspPPI | RGGWCCY | 1 cut(s) | 5 |
| SatI | GCNGC | 3 cut(s) | 66, 255, 258 |
| Sau3AI | GATC | 3 cut(s) | 125, 157, 189 |
| Sau96I | GGNCC | 1 cut(s) | 5 |
| SchI | GAGTC | 1 cut(s) | 143 |
| ScrFI | CCNGG | 1 cut(s) | 262 |
| SetI | ASST | 7 cut(s) | 10, 97, 109, 145, 177, 266, 318 |
| SinI | GGWCC | 1 cut(s) | 5 |
| Sse9I | AATT | 5 cut(s) | 110, 134, 166, 185, 306 |
| SsiI | CCGC | 3 cut(s) | 48, 66, 258 |
| StyD4I | CCNGG | 1 cut(s) | 260 |
| TaiI | ACGT | 1 cut(s) | 109 |
| TaqI | TCGA | 1 cut(s) | 222 |
| TasI | AATT | 5 cut(s) | 110, 134, 166, 185, 306 |
| TauI | GCSGC | 2 cut(s) | 68, 260 |
| TfiI | GAWTC | 2 cut(s) | 213, 239 |
| TseI | GCWGC | 1 cut(s) | 254 |
| TspDTI | ATGAA | 3 cut(s) | 88, 208, 257 |
| VpaK11BI | GGWCC | 1 cut(s) | 5 |