Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004542

Physical Location & Seq

Genomic Coordinates Reverse (-)

23807912 .. 23822800

Gene Structure 14889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1188600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCGCTTCGTTTCGAGGTTTTGGGGAGGTTTAACCGTGCTCGTGCAGCTAGATTGACCCTGCCTCACTTTGTGTGCCAGACACCACTTTTCATGCCCGTTGGAACGCAAGGAACTATTAAAGGGTTGACAACTGAACAGCTTGAAGATATTGGTGCTCAAATAATACTTGGCAATACTTATCATTTGGCACTTCGTCCGACTTCCGAGCTTCTTGATGAGTTGGGAGGTCTCCACAAATTTATGAACTGGCCAAGAGCATTGCTTACTGATTCCGGTGGCTTTCAGATGGTATCATTATTGCATTTAGCTGACATCACCGAAGAAGGTGTAACATTTCAGTCACCAGTTGATGGAAAGCCAATGCTTTTGACACCTGAGGAGTCAATTCAAATCCAAAACAGAATTGGAGCAGATATTATTATGGCCCTGGATGATGTAGTCAAAACCACCACCACTGGTCCAAGAGTTGAGGAGGCCATGTATCGCACTATACGATGGATAGACAGATGCATTGAAGCTCACAAGAGACCAACGGAGCAGAACTTATTTGGTATTGTACAAGGTGGCTTAGATCCTGTATTAAGAGATATATGTGTAAAGGGCTTGGTGAATCGAAACTTACCCGGGTATGCTATTGGCGGTCTTTCTGGTGGTGAAAGTAAGGATTCATTTTGGCGTGTTGTTGCACAGTGCACTGCTGCATTGCCTGAGGAGAAACCGCGATATGTTATGGGTGTTGGTTATCCTCTGGATATTGTAGTTTGCAGTGCTCTAGGTGCTGACATGTATGACTGTGTTTATCCCACACGTACGGCTCGCTTTGGTACAGCTCTTGTACCCGAGGGAGTGCTGAAACTCAAACAGAAAGCGATGGCTGAAGATACCCGCCCCGTTGATCCTACATGTGATTGTATGGTCTGCAAAAATTATACTAGAGCGTACATTCATTGCCTTGTTACAAAAGATGCTATGGGATCTCAGCTTCTGTCATATCACAATTTATATTACATGATGAAGCTAAGTAGAAATCTGCACTCTTCAATAATCAAGGGAAGGTTTCCAGAGTTTGTACGTGAATTTCTGCAACAAATGTTTCCGAAAGGTGATATCCCCGAGTGGGTCTGTGATGCCATGGAGGTTGCTGGAATCGACATTTCTTCCTGCTGCACTCCGTTTTCATCATCCCAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008479 GO:0009451 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046982 GO:0046983 GO:0071704 GO:0090304 GO:0098588 GO:0098805 GO:0101030 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TGT

Protein Analysis

399

Amino Acids

44.25

Weight (kDa)

5.96

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGT	PF01702	13 - 365	1.9e-155	Queuine tRNA-ribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560
malus_domestica	MD08G1188600.v1.1 MD15G1376400.v1.1
prunus_persica	Prupe.1G523100_v2.0.a1 Prupe.1G523100_v2.0.a1
pyrus_communis	pycom08g16230 pycom15g33630
rosa_chinensis	RchiOBHm_Chr3g0492071 RchiOBHm_Chr7g0242241
rosa_laevigata	RLG00000000904 RLG00000022795
rosa_multiflora	Rmu_sc0003846.1_g000008 Rmu_sc0031707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392560
rosa_rugosa	Rorug03G0251600 Rorug03G0251700 Rorug07G0314300
rosa_samantha	Rh3AG301800 Rh3BG337600 Rh3BG337700 Rh3CG335200 Rh3DG337300 Rh7AG469700 Rh7BG439500 Rh7CG486300 Rh7DG454700
rosa_wichuraiana	Rw3G026640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	353
AccII	CGCG	1 cut(s)	724
AciI	CCGC	3 cut(s)	642, 722, 889
AclWI	GGATC	3 cut(s)	569, 893, 985
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	2 cut(s)	239, 1079
AcuI	CTGAAG	1 cut(s)	900
AdeI	CACNNNGTG	1 cut(s)	73
AfaI	GTAC	6 cut(s)	561, 814, 829, 840, 944, 1074
AfiI	CCNNNNNNNGG	2 cut(s)	353, 1120
AflIII	ACRYGT	3 cut(s)	786, 809, 905
AgsI	TTSAA	4 cut(s)	146, 392, 518, 1044
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	8 cut(s)	50, 142, 211, 311, 521, 833, 985, 1021
AluI	AGCT	8 cut(s)	50, 142, 211, 311, 521, 833, 985, 1021
Alw21I	GWGCWC	4 cut(s)	43, 160, 698, 775
Alw26I	GTCTC	2 cut(s)	236, 523
Alw44I	GTGCAC	1 cut(s)	694
AlwI	GGATC	3 cut(s)	569, 893, 985
AlwNI	CAGNNNCTG	1 cut(s)	988
Ama87I	CYCGRG	3 cut(s)	626, 842, 1115
AoxI	GGCC	3 cut(s)	251, 426, 477
ApaLI	GTGCAC	1 cut(s)	694
ApeKI	GCWGC	3 cut(s)	47, 701, 1167
ApoI	RAATTY	2 cut(s)	239, 1079
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	427, 461
AsuC2I	CCSGG	2 cut(s)	627, 628
AsuHPI	GGTGA	5 cut(s)	310, 336, 622, 668, 1118
AvaI	CYCGRG	3 cut(s)	626, 842, 1115
AvaII	GGWCC	1 cut(s)	461
AxyI	CCTNAGG	2 cut(s)	378, 711
BaeGI	GKGCMC	1 cut(s)	698
BalI	TGGCCA	1 cut(s)	253
BauI	CACGAG	1 cut(s)	42
Bbv12I	GWGCWC	4 cut(s)	43, 160, 698, 775
BbvI	GCAGC	3 cut(s)	59, 688, 1154
BccI	CCATC	4 cut(s)	283, 347, 492, 868
BceAI	ACGGC	1 cut(s)	831
BciT130I	CCWGG	1 cut(s)	431
BcnI	CCSGG	2 cut(s)	627, 628
BcoDI	GTCTC	2 cut(s)	236, 523
BfaI	CTAG	3 cut(s)	51, 776, 936
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	3 cut(s)	48, 702, 1168
BlsI	GCNGC	3 cut(s)	49, 703, 1169
Bme1390I	CCNGG	3 cut(s)	431, 627, 628
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	3 cut(s)	626, 842, 1115
BmgT120I	GGNCC	2 cut(s)	427, 461
BmrFI	CCNGG	3 cut(s)	431, 627, 628
BmsI	GCATC	3 cut(s)	500, 958, 1120
BpuMI	CCSGG	2 cut(s)	627, 628
BsaAI	YACGTR	2 cut(s)	812, 1076
BsaI	GGTCTC	2 cut(s)	236, 523
BsaJI	CCNNGG	4 cut(s)	429, 626, 843, 1134
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 1120
Bse1I	ACTGG	3 cut(s)	254, 347, 463
Bse21I	CCTNAGG	2 cut(s)	378, 711
Bse3DI	GCAATG	3 cut(s)	260, 704, 949
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	4 cut(s)	429, 626, 843, 1134
BseGI	GGATG	2 cut(s)	439, 1184
BseLI	CCNNNNNNNGG	2 cut(s)	353, 1120
BseMI	GCAATG	3 cut(s)	260, 704, 949
BseMII	CTCAG	3 cut(s)	369, 702, 995
BseNI	ACTGG	3 cut(s)	254, 347, 463
BseRI	GAGGAG	3 cut(s)	395, 488, 728
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	3 cut(s)	59, 688, 1154
BsgI	GTGCAG	3 cut(s)	66, 1019, 1153
Bsh1236I	CGCG	1 cut(s)	724
BshFI	GGCC	3 cut(s)	253, 428, 479
BsiHKAI	GWGCWC	4 cut(s)	43, 160, 698, 775
BsiHKCI	CYCGRG	3 cut(s)	626, 842, 1115
BsiSI	CCGG	2 cut(s)	276, 627
BsiWI	CGTACG	1 cut(s)	812
BslI	CCNNNNNNNGG	2 cut(s)	353, 1120
BsmAI	GTCTC	2 cut(s)	236, 523
BsnI	GGCC	3 cut(s)	253, 428, 479
Bso31I	GGTCTC	2 cut(s)	236, 523
BsoBI	CYCGRG	3 cut(s)	626, 842, 1115
Bsp1286I	GDGCHC	4 cut(s)	43, 160, 698, 775
Bsp1407I	TGTACA	1 cut(s)	559
Bsp143I	GATC	3 cut(s)	574, 898, 977
Bsp19I	CCATGG	1 cut(s)	1134
BspACI	CCGC	3 cut(s)	642, 722, 889
BspANI	GGCC	3 cut(s)	253, 428, 479
BspCNI	CTCAG	3 cut(s)	370, 703, 994
BspFNI	CGCG	1 cut(s)	724
BspPI	GGATC	3 cut(s)	569, 893, 985
BspTNI	GGTCTC	2 cut(s)	236, 523
BsrDI	GCAATG	3 cut(s)	260, 704, 949
BsrGI	TGTACA	1 cut(s)	559
BsrI	ACTGG	3 cut(s)	254, 347, 463
BssECI	CCNNGG	4 cut(s)	429, 626, 843, 1134
BssMI	GATC	3 cut(s)	574, 898, 977
BssSI	CACGAG	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	1134
Bst2BI	CACGAG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	3 cut(s)	38, 693, 797
Bst6I	CTCTTC	1 cut(s)	1045
BstAUI	TGTACA	1 cut(s)	559
BstBAI	YACGTR	2 cut(s)	812, 1076
BstC8I	GCNNGC	1 cut(s)	820
BstDEI	CTNAG	5 cut(s)	378, 571, 711, 981, 1022
BstDSI	CCRYGG	1 cut(s)	1134
BstF5I	GGATG	2 cut(s)	439, 1184
BstFNI	CGCG	1 cut(s)	724
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	577, 901, 980
BstMAI	GTCTC	2 cut(s)	236, 523
BstMBI	GATC	3 cut(s)	574, 898, 977
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 779
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	2 cut(s)	790, 909
BstSCI	CCNGG	3 cut(s)	429, 625, 626
BstSLI	GKGCMC	1 cut(s)	698
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	3 cut(s)	59, 688, 1154
BstX2I	RGATCY	2 cut(s)	574, 977
BstYI	RGATCY	2 cut(s)	574, 977
Bsu36I	CCTNAGG	2 cut(s)	378, 711
BsuRI	GGCC	3 cut(s)	253, 428, 479
BtgI	CCRYGG	1 cut(s)	1134
BtgZI	GCGATG	1 cut(s)	887
BtsCI	GGATG	2 cut(s)	439, 1184
BtsI	GCAGTG	2 cut(s)	696, 775
BtsIMutI	CAGTG	4 cut(s)	456, 696, 698, 775
Cac8I	GCNNGC	1 cut(s)	820
CaiI	CAGNNNCTG	1 cut(s)	988
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	427, 461
Cfr9I	CCCGGG	1 cut(s)	626
Csp6I	GTAC	6 cut(s)	560, 813, 828, 839, 943, 1073
CviAII	CATG	6 cut(s)	94, 481, 787, 906, 1012, 1135
CviQI	GTAC	6 cut(s)	560, 813, 828, 839, 943, 1073
DdeI	CTNAG	5 cut(s)	378, 571, 711, 981, 1022
DpnI	GATC	3 cut(s)	576, 900, 979
DpnII	GATC	3 cut(s)	574, 898, 977
DraIII	CACNNNGTG	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	1045
EarI	CTCTTC	1 cut(s)	1045
Eco130I	CCWWGG	1 cut(s)	1134
Eco31I	GGTCTC	2 cut(s)	236, 523
Eco32I	GATATC	1 cut(s)	1111
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	900
Eco81I	CCTNAGG	2 cut(s)	378, 711
Eco88I	CYCGRG	3 cut(s)	626, 842, 1115
EcoRII	CCWGG	1 cut(s)	429
EcoRV	GATATC	1 cut(s)	1111
EcoT14I	CCWWGG	1 cut(s)	1134
EcoT22I	ATGCAT	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	1134
FaeI	CATG	6 cut(s)	97, 484, 790, 909, 1015, 1138
FatI	CATG	6 cut(s)	93, 480, 786, 905, 1011, 1134
FauI	CCCGC	1 cut(s)	896
Fnu4HI	GCNGC	3 cut(s)	48, 702, 1168
FokI	GGATG	2 cut(s)	446, 1171
Fsp4HI	GCNGC	3 cut(s)	48, 702, 1168
FspBI	CTAG	3 cut(s)	51, 776, 936
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	48, 702, 1168
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	253, 428, 479
HapII	CCGG	2 cut(s)	276, 627
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	6 cut(s)	97, 484, 790, 909, 1015, 1138
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	5 cut(s)	272, 383, 613, 668, 1149
HpaII	CCGG	2 cut(s)	276, 627
HphI	GGTGA	5 cut(s)	310, 336, 622, 668, 1118
Hpy166II	GTNNAC	2 cut(s)	129, 696
Hpy188I	TCNGA	4 cut(s)	201, 208, 288, 1101
Hpy188III	TCNNGA	3 cut(s)	215, 752, 1064
Hpy8I	GTNNAC	2 cut(s)	129, 696
HpyAV	CCTTC	2 cut(s)	320, 1050
HpyCH4III	ACNGT	3 cut(s)	38, 693, 797
HpyCH4IV	ACGT	2 cut(s)	811, 1075
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 779
HpyF3I	CTNAG	5 cut(s)	378, 571, 711, 981, 1022
HpySE526I	ACGT	2 cut(s)	811, 1075
Hsp92II	CATG	6 cut(s)	97, 484, 790, 909, 1015, 1138
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	574, 898, 977
LmnI	GCTCC	2 cut(s)	410, 538
Lsp1109I	GCAGC	3 cut(s)	59, 688, 1154
LweI	GCATC	3 cut(s)	500, 958, 1120
MaeI	CTAG	3 cut(s)	51, 776, 936
MaeII	ACGT	2 cut(s)	811, 1075
MaeIII	GTNAC	3 cut(s)	331, 342, 958
MalI	GATC	3 cut(s)	576, 900, 979
MboI	GATC	3 cut(s)	574, 898, 977
MboII	GAAGA	5 cut(s)	158, 335, 893, 1032, 1152
MflI	RGATCY	2 cut(s)	574, 977
MhlI	GDGCHC	4 cut(s)	43, 160, 698, 775
MlsI	TGGCCA	1 cut(s)	253
MluCI	AATT	6 cut(s)	239, 387, 405, 928, 1000, 1079
MluNI	TGGCCA	1 cut(s)	253
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	2 cut(s)	82, 224
Mox20I	TGGCCA	1 cut(s)	253
Mph1103I	ATGCAT	1 cut(s)	515
MscI	TGGCCA	1 cut(s)	253
MseI	TTAA	3 cut(s)	33, 120, 584
Msp20I	TGGCCA	1 cut(s)	253
MspI	CCGG	2 cut(s)	276, 627
MspR9I	CCNGG	3 cut(s)	431, 627, 628
MvaI	CCWGG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	2 cut(s)	47, 779
NciI	CCSGG	2 cut(s)	627, 628
NcoI	CCATGG	1 cut(s)	1134
NdeII	GATC	3 cut(s)	574, 898, 977
NlaIII	CATG	6 cut(s)	97, 484, 790, 909, 1015, 1138
NmuCI	GTSAC	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	515
NspI	RCATGY	2 cut(s)	790, 909
PciI	ACATGT	2 cut(s)	786, 905
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PfeI	GAWTC	4 cut(s)	272, 613, 668, 1149
Pfl23II	CGTACG	1 cut(s)	812
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	49, 703, 1169
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
Ppu21I	YACGTR	2 cut(s)	812, 1076
PscI	ACATGT	2 cut(s)	786, 905
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspLI	CGTACG	1 cut(s)	812
PspPI	GGNCC	2 cut(s)	427, 461
PstNI	CAGNNNCTG	1 cut(s)	988
PsuI	RGATCY	2 cut(s)	574, 977
RsaI	GTAC	6 cut(s)	561, 814, 829, 840, 944, 1074
RsaNI	GTAC	6 cut(s)	560, 813, 828, 839, 943, 1073
SaqAI	TTAA	3 cut(s)	33, 120, 584
SatI	GCNGC	3 cut(s)	48, 702, 1168
Sau3AI	GATC	3 cut(s)	574, 898, 977
Sau96I	GGNCC	2 cut(s)	427, 461
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	3 cut(s)	431, 627, 628
SduI	GDGCHC	4 cut(s)	43, 160, 698, 775
SfaNI	GCATC	3 cut(s)	500, 958, 1120
SinI	GGWCC	1 cut(s)	461
SmaI	CCCGGG	1 cut(s)	628
Sse9I	AATT	6 cut(s)	239, 387, 405, 928, 1000, 1079
SsiI	CCGC	3 cut(s)	642, 722, 889
SspMI	CTAG	3 cut(s)	51, 776, 936
StyD4I	CCNGG	3 cut(s)	429, 625, 626
StyI	CCWWGG	1 cut(s)	1134
TaaI	ACNGT	3 cut(s)	38, 693, 797
TaiI	ACGT	2 cut(s)	814, 1078
TaqI	TCGA	3 cut(s)	15, 616, 1152
TasI	AATT	6 cut(s)	239, 387, 405, 928, 1000, 1079
TatI	WGTACW	1 cut(s)	559
TfiI	GAWTC	4 cut(s)	272, 613, 668, 1149
Tru1I	TTAA	3 cut(s)	33, 120, 584
Tru9I	TTAA	3 cut(s)	33, 120, 584
TscAI	CASTG	4 cut(s)	463, 698, 703, 775
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	3 cut(s)	47, 701, 1167
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	6 cut(s)	82, 260, 660, 938, 1031, 1170
TspGWI	ACGGA	2 cut(s)	551, 1164
TspMI	CCCGGG	1 cut(s)	626
TspRI	CASTG	4 cut(s)	463, 698, 703, 775
Van91I	CCANNNNNTGG	1 cut(s)	353
VneI	GTGCAC	1 cut(s)	694
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	2 cut(s)	239, 1079
XceI	RCATGY	2 cut(s)	790, 909
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
XmaI	CCCGGG	1 cut(s)	626
XspI	CTAG	3 cut(s)	51, 776, 936
Zsp2I	ATGCAT	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.