Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004542

Physical Location & Seq

Genomic Coordinates Forward (+)

68396766 .. 68399928

Gene Structure 3163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21711

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAATCATGTGTGTCCTTATTGCATTTAGCTGACATCACTGAGAAGGGTGTAACATTTCAGTCACCAGTCGATGGAAAGCCAATGCTATTGACACCTGAGGAATTAATTCAAATCCAAAATAGAATTGGAGCAGATATTATAATGGCCCTTGATGATGTAGTGAAAACCACCATCACTGGTCCAAGAATTGAGGAGGCCATGTATCGTATTCTACGATGGATTGACAAATGTATAGCAGCTCATACAAGACCGAGCGAGCAGAACTTATTTGGTATTGTTCAAGGTGGCTTAGATCCTGTACTAAGGGATATATGCGTCAGAGGCTTAGTAGAATGGAATTTGCCTGTCTATGCCATAGGCGGTCTTGCGGATGGCGAAAGTAAAGATTCATTTCGGCGCTGCACTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008479 GO:0009451 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046982 GO:0046983 GO:0071704 GO:0090304 GO:0098588 GO:0098805 GO:0101030 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TGT

Protein Analysis

137

Amino Acids

15.15

Weight (kDa)

4.97

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGT	PF01702	4 - 134	1.3e-42	Queuine tRNA-ribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560
malus_domestica	MD08G1188600.v1.1 MD15G1376400.v1.1
prunus_persica	Prupe.1G523100_v2.0.a1 Prupe.1G523100_v2.0.a1
pyrus_communis	pycom08g16230 pycom15g33630
rosa_chinensis	RchiOBHm_Chr3g0492071 RchiOBHm_Chr7g0242241
rosa_laevigata	RLG00000000904 RLG00000022795
rosa_multiflora	Rmu_sc0003846.1_g000008 Rmu_sc0031707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392560
rosa_rugosa	Rorug03G0251600 Rorug03G0251700 Rorug07G0314300
rosa_samantha	Rh3AG301800 Rh3BG337600 Rh3BG337700 Rh3CG335200 Rh3DG337300 Rh7AG469700 Rh7BG439500 Rh7CG486300 Rh7DG454700
rosa_wichuraiana	Rw3G026640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	2 cut(s)	363, 371
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	340
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	113, 284
AluBI	AGCT	2 cut(s)	32, 242
AluI	AGCT	2 cut(s)	32, 242
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	2 cut(s)	147, 198
ApeKI	GCWGC	2 cut(s)	239, 402
ApoI	RAATTY	1 cut(s)	340
AseI	ATTAAT	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	148, 182
AsuHPI	GGTGA	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	182
AxyI	CCTNAGG	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	251, 389
BccI	CCATC	4 cut(s)	68, 182, 213, 368
BfoI	RGCGCY	1 cut(s)	403
BisI	GCNGC	2 cut(s)	240, 403
BlsI	GCNGC	2 cut(s)	241, 404
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	148, 182
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	68, 184
Bse21I	CCTNAGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	33, 90
BseNI	ACTGG	2 cut(s)	68, 184
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	251, 389
BsgI	GTGCAG	1 cut(s)	388
BshFI	GGCC	2 cut(s)	149, 200
BslI	CCNNNNNNNGG	1 cut(s)	74
BsnI	GGCC	2 cut(s)	149, 200
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	2 cut(s)	363, 371
BspANI	GGCC	2 cut(s)	149, 200
BspCNI	CTCAG	2 cut(s)	34, 91
BspPI	GGATC	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	68, 184
BssMI	GATC	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	5 cut(s)	42, 99, 292, 305, 328
BstF5I	GGATG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	251, 389
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	149, 200
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	39, 177, 405
Cac8I	GCNNGC	1 cut(s)	260
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	148, 182
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	2 cut(s)	9, 202
CviJI	RGCY	7 cut(s)	32, 82, 149, 200, 242, 291, 327
CviKI_1	RGCY	7 cut(s)	32, 82, 149, 200, 242, 291, 327
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	5 cut(s)	42, 99, 292, 305, 328
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	182
Eco81I	CCTNAGG	1 cut(s)	99
FaeI	CATG	2 cut(s)	12, 205
FaiI	YATR	9 cut(s)	10, 143, 203, 236, 246, 314, 316, 354, 359
FatI	CATG	2 cut(s)	8, 201
Fnu4HI	GCNGC	2 cut(s)	240, 403
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	2 cut(s)	240, 403
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	2 cut(s)	240, 403
HaeII	RGCGCY	1 cut(s)	403
HaeIII	GGCC	2 cut(s)	149, 200
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	12, 205
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HinfI	GANTC	2 cut(s)	5, 389
HphI	GGTGA	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	25, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	5 cut(s)	42, 99, 292, 305, 328
Hsp92II	CATG	2 cut(s)	12, 205
HspAI	GCGC	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	5 cut(s)	81, 111, 165, 312, 360
Lsp1109I	GCAGC	2 cut(s)	251, 389
MaeIII	GTNAC	2 cut(s)	52, 63
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	5 cut(s)	104, 108, 126, 189, 340
MnlI	CCTC	4 cut(s)	94, 187, 190, 317
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	324
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	2 cut(s)	12, 205
NmuCI	GTSAC	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	5, 389
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	241, 404
PshBI	ATTAAT	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	143
PspPI	GGNCC	2 cut(s)	148, 182
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	2 cut(s)	240, 403
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	2 cut(s)	148, 182
SetI	ASST	4 cut(s)	34, 100, 244, 289
SinI	GGWCC	1 cut(s)	182
Sse9I	AATT	5 cut(s)	104, 108, 126, 189, 340
SsiI	CCGC	2 cut(s)	363, 371
TaqI	TCGA	1 cut(s)	72
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	5 cut(s)	104, 108, 126, 189, 340
TatI	WGTACW	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	5, 389
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	3 cut(s)	46, 184, 412
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	2 cut(s)	239, 402
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	381
TspRI	CASTG	3 cut(s)	46, 184, 412
Van91I	CCANNNNNTGG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	182
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.