Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031707.1

Orthogroup ID

OG0004542

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1712

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031707.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggcccttgatgatgtagtgagaaccaccatcactggtccaagaattgaggaggccatgtatcgtactctacgatggattgacagatgtatagcagctcatacaagaccgagcgagcagaacttatttggtattgttcaaggtggcttagatcctgtactaagggatatatgcgtcagaggcttagtagaacggaatttgcctggctatgccataggcggtcttgcgggtggcgaaagtaaggattcattttggcgtgttgttgctcagtgcactgctgcactgcctgaggacaagccgcgatatgttatgggcgttggttatccattggacattgtagtttgcagtgcgttaggtgctgacatgtatgactgtgtttatccaacacgtactgctcgctttggcacagctcttatacctgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008479 GO:0009451 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046982 GO:0046983 GO:0071704 GO:0090304 GO:0098588 GO:0098805 GO:0101030 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TGT

Protein Analysis

141

Amino Acids

15.46

Weight (kDa)

5.43

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560
malus_domestica	MD08G1188600.v1.1 MD15G1376400.v1.1
prunus_persica	Prupe.1G523100_v2.0.a1 Prupe.1G523100_v2.0.a1
pyrus_communis	pycom08g16230 pycom15g33630
rosa_chinensis	RchiOBHm_Chr3g0492071 RchiOBHm_Chr7g0242241
rosa_laevigata	RLG00000000904 RLG00000022795
rosa_multiflora	Rmu_sc0003846.1_g000008 Rmu_sc0031707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392560
rosa_rugosa	Rorug03G0251600 Rorug03G0251700 Rorug07G0314300
rosa_samantha	Rh3AG301800 Rh3BG337600 Rh3BG337700 Rh3CG335200 Rh3DG337300 Rh7AG469700 Rh7BG439500 Rh7CG486300 Rh7DG454700
rosa_wichuraiana	Rw3G026640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	301
AciI	CCGC	3 cut(s)	219, 227, 299
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	3 cut(s)	67, 159, 391
AflIII	ACRYGT	2 cut(s)	363, 386
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	2 cut(s)	98, 410
AluI	AGCT	2 cut(s)	98, 410
Alw21I	GWGCWC	1 cut(s)	275
Alw44I	GTGCAC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	2 cut(s)	3, 54
ApaLI	GTGCAC	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	95, 278
ApoI	RAATTY	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	4, 38
AvaII	GGWCC	1 cut(s)	38
AxyI	CCTNAGG	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	107, 265
BccI	CCATC	2 cut(s)	38, 69
BciT130I	CCWGG	1 cut(s)	204
BisI	GCNGC	3 cut(s)	96, 279, 299
BlsI	GCNGC	3 cut(s)	97, 280, 300
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	4, 38
BmrFI	CCNGG	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	389
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bse1I	ACTGG	1 cut(s)	40
Bse21I	CCTNAGG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	204
BseMII	CTCAG	3 cut(s)	279, 281, 411
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	107, 265
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	2 cut(s)	5, 56
BsiHKAI	GWGCWC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	5, 56
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	3 cut(s)	219, 227, 299
BspANI	GGCC	2 cut(s)	5, 56
BspCNI	CTCAG	3 cut(s)	280, 280, 412
BspFNI	CGCG	1 cut(s)	301
BspPI	GGATC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	116, 397
BstDEI	CTNAG	6 cut(s)	148, 161, 184, 267, 288, 420
BstFNI	CGCG	1 cut(s)	301
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 356
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	107, 265
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	5, 56
BtsI	GCAGTG	3 cut(s)	273, 281, 352
BtsIMutI	CAGTG	5 cut(s)	33, 273, 275, 281, 352
Cac8I	GCNNGC	2 cut(s)	116, 397
Cfr13I	GGNCC	2 cut(s)	4, 38
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	66, 158, 390
CviAII	CATG	2 cut(s)	58, 364
CviJI	RGCY	8 cut(s)	5, 56, 98, 147, 183, 207, 298, 410
CviKI_1	RGCY	8 cut(s)	5, 56, 98, 147, 183, 207, 298, 410
CviQI	GTAC	3 cut(s)	66, 158, 390
DdeI	CTNAG	6 cut(s)	148, 161, 184, 267, 288, 420
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	61, 367
FatI	CATG	2 cut(s)	57, 363
FauI	CCCGC	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	96, 279, 299
Fsp4HI	GCNGC	3 cut(s)	96, 279, 299
GluI	GCNGC	3 cut(s)	96, 279, 299
HaeIII	GGCC	2 cut(s)	5, 56
HgaI	GACGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	61, 367
HinfI	GANTC	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	3 cut(s)	273, 281, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 356
HpyF3I	CTNAG	6 cut(s)	148, 161, 184, 267, 288, 420
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	2 cut(s)	61, 367
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	21, 168, 189, 216, 300
Lsp1109I	GCAGC	2 cut(s)	107, 265
MaeII	ACGT	1 cut(s)	388
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	2 cut(s)	45, 196
MmeI	TCCRAC	1 cut(s)	407
MnlI	CCTC	4 cut(s)	43, 46, 173, 283
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	180, 356
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	61, 367
NspI	RCATGY	1 cut(s)	367
PciI	ACATGT	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	97, 280, 300
Ppu21I	YACGTR	1 cut(s)	389
PscI	ACATGT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	4, 38
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	3 cut(s)	67, 159, 391
RsaNI	GTAC	3 cut(s)	66, 158, 390
SatI	GCNGC	3 cut(s)	96, 279, 299
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	2 cut(s)	4, 38
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	6 cut(s)	100, 145, 358, 391, 412, 421
SinI	GGWCC	1 cut(s)	38
Sse9I	AATT	2 cut(s)	45, 196
SsiI	CCGC	3 cut(s)	219, 227, 299
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	391
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	2 cut(s)	45, 196
TatI	WGTACW	1 cut(s)	157
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	1 cut(s)	245
TscAI	CASTG	5 cut(s)	40, 275, 280, 288, 352
TseI	GCWGC	2 cut(s)	95, 278
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	5 cut(s)	40, 275, 280, 288, 352
VneI	GTGCAC	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.