Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004542

Physical Location & Seq

Genomic Coordinates Forward (+)

65071137 .. 65076360

Gene Structure 5224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG469700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGCTTCGTTTTGAGGTGTCCTTATTGCATTTAGCTGACATCACTGAGAAGGGTGTAACATTTCAGTCACCAGTCGATGGAAAGCCAATGCTATTGACACCTGAGGAATTAATTCAAATCCAAAATAGAATTGGAGCAGATATTATAATGGCCCTTGATGATGTAGTGAAAACCACCATCACTGGTCCAAGAATTGAGGAGGCCATGTATCGTATTCTACGATGGATTGACAAATGTATAGCAGCTCATACAAGACCGAGCGAGCAGAACTTATTTGGTATTGTTCAAGGTGGCTTAGATCCTGTACTAAGGGATATATGCGTCAGAGGCTTAGTAGAATGGAATTTGCCTGTGTATGCGGTCTTGCGGATGGCGAAAGTAAAGATTCATTTCGGCGCTGCACTGCCTGAGGACAAGCCGCGATATGTTATGGGCGTTGGTTATCCATTGGACATTGTAGTTTGCAGTGCTTTAGGTGCTGACATGTATGACTGTGTTTATCCAACACGTACTGCTCGCTTTGGCACAGCTCTTATACCTGAGGGAGTGCTGAAGCTGAAGCACAAAGCTATGGCTGAGGATATCCGCCCTATCGATCCTACAAGTGCTTGTATGGTATGCAAGAATTATACTAGAGCTTACATTCATTGCCTAGTTACAAAAGATGCTATGGGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008479 GO:0009451 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046982 GO:0046983 GO:0071704 GO:0090304 GO:0098588 GO:0098805 GO:0101030 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TGT

Protein Analysis

227

Amino Acids

25.22

Weight (kDa)

6.94

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGT	PF01702	7 - 224	9.8e-77	Queuine tRNA-ribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560
malus_domestica	MD08G1188600.v1.1 MD15G1376400.v1.1
prunus_persica	Prupe.1G523100_v2.0.a1 Prupe.1G523100_v2.0.a1
pyrus_communis	pycom08g16230 pycom15g33630
rosa_chinensis	RchiOBHm_Chr3g0492071 RchiOBHm_Chr7g0242241
rosa_laevigata	RLG00000000904 RLG00000022795
rosa_multiflora	Rmu_sc0003846.1_g000008 Rmu_sc0031707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392560
rosa_rugosa	Rorug03G0251600 Rorug03G0251700 Rorug07G0314300
rosa_samantha	Rh3AG301800 Rh3BG337600 Rh3BG337700 Rh3CG335200 Rh3DG337300 Rh7AG469700 Rh7BG439500 Rh7CG486300 Rh7DG454700
rosa_wichuraiana	Rw3G026640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	80
AccII	CGCG	1 cut(s)	424
AciI	CCGC	4 cut(s)	362, 370, 422, 589
AclWI	GGATC	2 cut(s)	296, 593
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	575, 581
AfaI	GTAC	2 cut(s)	309, 514
AfiI	CCNNNNNNNGG	1 cut(s)	80
AflIII	ACRYGT	2 cut(s)	486, 509
AgsI	TTSAA	2 cut(s)	119, 290
AluBI	AGCT	6 cut(s)	38, 248, 533, 559, 572, 641
AluI	AGCT	6 cut(s)	38, 248, 533, 559, 572, 641
AlwI	GGATC	2 cut(s)	296, 593
AoxI	GGCC	2 cut(s)	153, 204
ApeKI	GCWGC	2 cut(s)	245, 401
ApoI	RAATTY	1 cut(s)	346
AseI	ATTAAT	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	114
AspLEI	GCGC	2 cut(s)	7, 401
AspS9I	GGNCC	2 cut(s)	154, 188
AsuHPI	GGTGA	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	188
AxyI	CCTNAGG	3 cut(s)	105, 411, 543
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	2 cut(s)	257, 388
BccI	CCATC	4 cut(s)	74, 188, 219, 367
BfaI	CTAG	2 cut(s)	636, 656
BfoI	RGCGCY	2 cut(s)	8, 402
BisI	GCNGC	3 cut(s)	246, 402, 422
BlsI	GCNGC	3 cut(s)	247, 403, 423
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	154, 188
BmsI	GCATC	1 cut(s)	658
Bpu10I	CCTNAGC	1 cut(s)	579
Bsa29I	ATCGAT	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	512
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	74, 190
Bse21I	CCTNAGG	3 cut(s)	105, 411, 543
Bse3DI	GCAATG	1 cut(s)	649
BseCI	ATCGAT	1 cut(s)	597
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	649
BseMII	CTCAG	5 cut(s)	39, 96, 402, 534, 570
BseNI	ACTGG	2 cut(s)	74, 190
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	257, 388
BsgI	GTGCAG	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	2 cut(s)	155, 206
BshVI	ATCGAT	1 cut(s)	597
BslI	CCNNNNNNNGG	1 cut(s)	80
BsnI	GGCC	2 cut(s)	155, 206
Bsp143I	GATC	3 cut(s)	301, 598, 677
BspACI	CCGC	4 cut(s)	362, 370, 422, 589
BspANI	GGCC	2 cut(s)	155, 206
BspCNI	CTCAG	5 cut(s)	40, 97, 403, 535, 571
BspDI	ATCGAT	1 cut(s)	597
BspFNI	CGCG	1 cut(s)	424
BspPI	GGATC	2 cut(s)	296, 593
BsrDI	GCAATG	1 cut(s)	649
BsrI	ACTGG	2 cut(s)	74, 190
BssMI	GATC	3 cut(s)	301, 598, 677
Bst4CI	ACNGT	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	266, 520
BstDEI	CTNAG	9 cut(s)	48, 105, 298, 311, 334, 411, 543, 579, 681
BstF5I	GGATG	1 cut(s)	378
BstFNI	CGCG	1 cut(s)	424
BstH2I	RGCGCY	2 cut(s)	8, 402
BstHHI	GCGC	2 cut(s)	7, 401
BstKTI	GATC	3 cut(s)	304, 601, 680
BstMBI	GATC	3 cut(s)	301, 598, 677
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 479
BstNSI	RCATGY	1 cut(s)	490
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	257, 388
BstX2I	RGATCY	2 cut(s)	301, 677
BstYI	RGATCY	2 cut(s)	301, 677
Bsu15I	ATCGAT	1 cut(s)	597
Bsu36I	CCTNAGG	3 cut(s)	105, 411, 543
BsuRI	GGCC	2 cut(s)	155, 206
BsuTUI	ATCGAT	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	378
BtsI	GCAGTG	2 cut(s)	404, 475
BtsIMutI	CAGTG	4 cut(s)	45, 183, 404, 475
Cac8I	GCNNGC	2 cut(s)	266, 520
CfoI	GCGC	2 cut(s)	7, 401
Cfr13I	GGNCC	2 cut(s)	154, 188
ClaI	ATCGAT	1 cut(s)	597
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	308, 513
CviAII	CATG	2 cut(s)	208, 487
CviQI	GTAC	2 cut(s)	308, 513
DdeI	CTNAG	9 cut(s)	48, 105, 298, 311, 334, 411, 543, 579, 681
DpnI	GATC	3 cut(s)	303, 600, 679
DpnII	GATC	3 cut(s)	301, 598, 677
EciI	GGCGGA	1 cut(s)	578
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	2 cut(s)	575, 581
Eco81I	CCTNAGG	3 cut(s)	105, 411, 543
EcoRV	GATATC	1 cut(s)	586
FaeI	CATG	2 cut(s)	211, 490
FatI	CATG	2 cut(s)	207, 486
Fnu4HI	GCNGC	3 cut(s)	246, 402, 422
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	3 cut(s)	246, 402, 422
FspBI	CTAG	2 cut(s)	636, 656
GlaI	GCGC	2 cut(s)	6, 400
GluI	GCNGC	3 cut(s)	246, 402, 422
HaeII	RGCGCY	2 cut(s)	8, 402
HaeIII	GGCC	2 cut(s)	155, 206
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	2 cut(s)	7, 401
Hin1II	CATG	2 cut(s)	211, 490
Hin6I	GCGC	2 cut(s)	5, 399
HinP1I	GCGC	2 cut(s)	5, 399
HinfI	GANTC	1 cut(s)	388
HphI	GGTGA	1 cut(s)	63
Hpy188I	TCNGA	1 cut(s)	329
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	511
HpyCH4V	TGCA	4 cut(s)	31, 404, 468, 624
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 479
HpyF3I	CTNAG	9 cut(s)	48, 105, 298, 311, 334, 411, 543, 579, 681
HpySE526I	ACGT	1 cut(s)	511
Hsp92II	CATG	2 cut(s)	211, 490
HspAI	GCGC	2 cut(s)	5, 399
Kzo9I	GATC	3 cut(s)	301, 598, 677
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	7 cut(s)	87, 117, 171, 318, 366, 423, 555
Lsp1109I	GCAGC	2 cut(s)	257, 388
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	2 cut(s)	636, 656
MaeII	ACGT	1 cut(s)	511
MaeIII	GTNAC	3 cut(s)	58, 69, 658
MalI	GATC	3 cut(s)	303, 600, 679
MboI	GATC	3 cut(s)	301, 598, 677
MflI	RGATCY	2 cut(s)	301, 677
MluCI	AATT	6 cut(s)	110, 114, 132, 195, 346, 628
MmeI	TCCRAC	1 cut(s)	530
MnlI	CCTC	8 cut(s)	10, 100, 193, 196, 323, 406, 538, 574
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	1 cut(s)	113
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	330, 479
NdeII	GATC	3 cut(s)	301, 598, 677
NlaIII	CATG	2 cut(s)	211, 490
NmuCI	GTSAC	1 cut(s)	69
NspI	RCATGY	1 cut(s)	490
PciI	ACATGT	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	388
PflMI	CCANNNNNTGG	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	247, 403, 423
Ppu21I	YACGTR	1 cut(s)	512
PscI	ACATGT	1 cut(s)	486
PshBI	ATTAAT	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	149
PspPI	GGNCC	2 cut(s)	154, 188
PsuI	RGATCY	2 cut(s)	301, 677
RsaI	GTAC	2 cut(s)	309, 514
RsaNI	GTAC	2 cut(s)	308, 513
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	3 cut(s)	246, 402, 422
Sau3AI	GATC	3 cut(s)	301, 598, 677
Sau96I	GGNCC	2 cut(s)	154, 188
SfaNI	GCATC	1 cut(s)	658
SinI	GGWCC	1 cut(s)	188
Sse9I	AATT	6 cut(s)	110, 114, 132, 195, 346, 628
SsiI	CCGC	4 cut(s)	362, 370, 422, 589
SspMI	CTAG	2 cut(s)	636, 656
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	514
TaqI	TCGA	2 cut(s)	78, 597
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	6 cut(s)	110, 114, 132, 195, 346, 628
TatI	WGTACW	1 cut(s)	307
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	4 cut(s)	52, 190, 411, 475
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	2 cut(s)	245, 401
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	2 cut(s)	380, 638
TspRI	CASTG	4 cut(s)	52, 190, 411, 475
Van91I	CCANNNNNTGG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	188
VspI	ATTAAT	1 cut(s)	113
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	2 cut(s)	636, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.