Rroxscaffold_6G00392560

Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming queuine, allowing a nucleophilic attack on the C1' of the ribose to form the product

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
12147876 .. 12156398
8523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392560.1

Sequence Viewer

Length: 1203 bp
ATGGCGCTTCGTTTCGAGGTTTTGGGGAGGTTCAATCGTGCTCGTGCAGCTCAACTCACACTCCCTCACTTTGTATGTCAGACTCCTCTTTTCATGCCTGTTGGAACACAAGGAACTATAAAAGGGTTGGCAACTGACCAGCTTGAGGAGATTGGTTGCCAAATTATTCTTGGGAATACATATCATTTGGCACTTAGACCTACTTCTGAGCTTATTGACGAGATGGGAGGTCTCCACAAATTTATGAATTGGCCAAGAGCGCTGCTTACTGATTCTGGTGGCTTTCAGATGGTATCCTTATTGCATTTAGCTGACATCACTGAGGAGGGTGTAACATTTCAGTCACCGGTCGATGGAAAGCCAATGCTCTTGACACCTGAGGAATCAATTCAAGTCCAAAATAGAATTGGAGCAGATATTATAATGGCCCTTGATGATGTAGTGAGAACCACCATCACTGGTCCAAGAATTGAGGAGGCCATGTATCGTACTCTACGATGGATTGACAGATGTATAGCAGCTCATACAAGACCGAGCGAGCAGAACTTATTTGGTATTGTTCAAGGTGGCTTAGATCCTGTACTAAGGGATATATGCGTCAGAGGCTTAGTAGAACGGAATTTGCCTGGCTATGCCATAGGCGGTCTTGCGGGTGGCGAAAGTAAGGATTCATTTTGGCGTGTTGTTGCTCAGTGCACTGCTGCACTGCCTGAGGACAAGCCGCGATATGTTATGGGCGTTGGTTATCCATTGGACATTGTAGTTTGCAGTGCTTTAGGTGCTGACATGTATGACTGTGTTTATCCAACACGTACTGCTCGCTTTGGCACTGCTCTTATACCTGAGGGAGTGCTGAAGCTGAAGCACAAAGCTATGGCTGAGGATACCCGCCCTATCGATCGTACATGTGCTTGTATGGTGTGCAAGAATTATACTAGAGCTTACATTCATTGCCTAGTTACAAAAGATGCTATGGGATCTCAGCTTCTGTCATATCACAACCTTTATTACATGCTAAAGCTAAGTAGAGATCTACACTCATCAATAATCCAAGGAACATTTCCAGAGTTTATATGCAACTTTCTGCAAACAATGTTTCCTAAAGGAGATGTCCCGGAATGGGTCTGCAATGCCATGGAGGTTGCTGGAATTGACATCTCTTCCTGCTGTACTCCATTTTCTTCATCCCAAGATTCAGATTAG

Protein Analysis

400

Amino Acids

44.28

Weight (kDa)

5.64

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TGT PF01702 13 - 365 4.4e-152 Queuine tRNA-ribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AccII CGCG 1 cut(s) 724
AciI CCGC 4 cut(s) 642, 650, 722, 889
AclWI GGATC 2 cut(s) 569, 985
AcoI YGGCCR 1 cut(s) 251
AcsI RAATTY 2 cut(s) 239, 619
AcuI CTGAAG 2 cut(s) 875, 881
AfaI GTAC 5 cut(s) 490, 582, 814, 904, 1171
AfeI AGCGCT 1 cut(s) 261
AfiI CCNNNNNNNGG 3 cut(s) 145, 353, 1120
AflIII ACRYGT 3 cut(s) 786, 809, 905
AgeI ACCGGT 1 cut(s) 346
AgsI TTSAA 3 cut(s) 34, 392, 563
AjnI CCWGG 1 cut(s) 625
AjuI GAANNNNNNNTTGG 2 cut(s) 1044, 1076
Alw21I GWGCWC 2 cut(s) 43, 698
Alw26I GTCTC 1 cut(s) 236
Alw44I GTGCAC 1 cut(s) 694
AlwI GGATC 2 cut(s) 569, 985
AlwNI CAGNNNCTG 1 cut(s) 988
Aor51HI AGCGCT 1 cut(s) 261
AoxI GGCC 3 cut(s) 251, 426, 477
ApaLI GTGCAC 1 cut(s) 694
ApeKI GCWGC 4 cut(s) 47, 262, 518, 701
ApoI RAATTY 2 cut(s) 239, 619
AsiGI ACCGGT 1 cut(s) 346
Asp700I GAANNNNTTC 1 cut(s) 387
AspLEI GCGC 2 cut(s) 7, 262
AspS9I GGNCC 2 cut(s) 427, 461
AsuC2I CCSGG 1 cut(s) 1115
AsuHPI GGTGA 1 cut(s) 336
AvaII GGWCC 1 cut(s) 461
AxyI CCTNAGG 3 cut(s) 378, 711, 843
BaeGI GKGCMC 1 cut(s) 698
BalI TGGCCA 1 cut(s) 253
BauI CACGAG 1 cut(s) 42
Bbv12I GWGCWC 2 cut(s) 43, 698
BbvCI CCTCAGC 1 cut(s) 879
BbvI GCAGC 4 cut(s) 59, 249, 530, 688
BccI CCATC 5 cut(s) 217, 283, 347, 461, 492
BciT130I CCWGG 1 cut(s) 627
BciVI GTATCC 2 cut(s) 304, 877
BcnI CCSGG 1 cut(s) 1115
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 2 cut(s) 936, 956
BfoI RGCGCY 2 cut(s) 8, 263
BfuI GTATCC 2 cut(s) 304, 877
BglII AGATCT 1 cut(s) 1030
BisI GCNGC 5 cut(s) 48, 263, 519, 702, 722
BlsI GCNGC 5 cut(s) 49, 264, 520, 703, 723
Bme1390I CCNGG 2 cut(s) 627, 1115
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 427, 461
BmrFI CCNGG 2 cut(s) 627, 1115
BmsI GCATC 1 cut(s) 958
Bpu10I CCTNAGC 1 cut(s) 879
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 1115
Bsa29I ATCGAT 1 cut(s) 897
BsaAI YACGTR 1 cut(s) 812
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 1051, 1134
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 467, 497
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 353, 1120
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 463
Bse21I CCTNAGG 3 cut(s) 378, 711, 843
Bse3DI GCAATG 2 cut(s) 949, 1135
BseBI CCWGG 1 cut(s) 627
BseCI ATCGAT 1 cut(s) 897
BseDI CCNNGG 2 cut(s) 1051, 1134
BseGI GGATG 1 cut(s) 1184
BseLI CCNNNNNNNGG 3 cut(s) 145, 353, 1120
BseMI GCAATG 2 cut(s) 949, 1135
BseMII CTCAG 8 cut(s) 198, 312, 369, 702, 704, 834, 870, 995
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 4 cut(s) 75, 161, 338, 488
BseSI GKGCMC 1 cut(s) 698
BseXI GCAGC 4 cut(s) 59, 249, 530, 688
BsgI GTGCAG 2 cut(s) 66, 687
Bsh1236I CGCG 1 cut(s) 724
Bsh1285I CGRYCG 2 cut(s) 351, 901
BshFI GGCC 3 cut(s) 253, 428, 479
BshTI ACCGGT 1 cut(s) 346
BshVI ATCGAT 1 cut(s) 897
BsiEI CGRYCG 2 cut(s) 351, 901
BsiHKAI GWGCWC 2 cut(s) 43, 698
BsiSI CCGG 2 cut(s) 347, 1115
BslFI GGGAC 1 cut(s) 1097
BslI CCNNNNNNNGG 3 cut(s) 145, 353, 1120
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 1097
BsnI GGCC 3 cut(s) 253, 428, 479
Bso31I GGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 43, 698
Bsp143I GATC 4 cut(s) 574, 898, 977, 1030
Bsp19I CCATGG 1 cut(s) 1134
BspACI CCGC 4 cut(s) 642, 650, 722, 889
BspANI GGCC 3 cut(s) 253, 428, 479
BspCNI CTCAG 8 cut(s) 199, 313, 370, 703, 703, 835, 871, 994
BspDI ATCGAT 1 cut(s) 897
BspFNI CGCG 1 cut(s) 724
BspPI GGATC 2 cut(s) 569, 985
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 2 cut(s) 949, 1135
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 1 cut(s) 463
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 1051, 1134
BssMI GATC 4 cut(s) 574, 898, 977, 1030
BssSI CACGAG 1 cut(s) 42
BssT1I CCWWGG 2 cut(s) 1051, 1134
Bst2BI CACGAG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 1 cut(s) 797
Bst6I CTCTTC 1 cut(s) 1165
BstBAI YACGTR 1 cut(s) 812
BstC8I GCNNGC 2 cut(s) 539, 820
BstDSI CCRYGG 1 cut(s) 1134
BstF5I GGATG 1 cut(s) 1184
BstFNI CGCG 1 cut(s) 724
BstH2I RGCGCY 2 cut(s) 8, 263
BstHHI GCGC 2 cut(s) 7, 262
BstKTI GATC 4 cut(s) 577, 901, 980, 1033
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 4 cut(s) 574, 898, 977, 1030
BstMCI CGRYCG 2 cut(s) 351, 901
BstMWI GCNNNNNNNGC 4 cut(s) 47, 259, 603, 779
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 3 cut(s) 790, 909, 1015
BstSCI CCNGG 2 cut(s) 625, 1113
BstSLI GKGCMC 1 cut(s) 698
BstUI CGCG 1 cut(s) 724
BstV1I GCAGC 4 cut(s) 59, 249, 530, 688
BstX2I RGATCY 3 cut(s) 574, 977, 1030
BstYI RGATCY 3 cut(s) 574, 977, 1030
Bsu15I ATCGAT 1 cut(s) 897
Bsu36I CCTNAGG 3 cut(s) 378, 711, 843
BsuI GTATCC 2 cut(s) 304, 877
BsuRI GGCC 3 cut(s) 253, 428, 479
BsuTUI ATCGAT 1 cut(s) 897
BtgI CCRYGG 1 cut(s) 1134
BtsCI GGATG 1 cut(s) 1184
BtsI GCAGTG 4 cut(s) 696, 704, 775, 828
BtsIMutI CAGTG 7 cut(s) 318, 456, 696, 698, 704, 775, 828
Cac8I GCNNGC 2 cut(s) 539, 820
CaiI CAGNNNCTG 1 cut(s) 988
CfoI GCGC 2 cut(s) 7, 262
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 427, 461
ClaI ATCGAT 1 cut(s) 897
CseI GACGC 1 cut(s) 586
Csp6I GTAC 5 cut(s) 489, 581, 813, 903, 1170
CspAI ACCGGT 1 cut(s) 346
CviAII CATG 6 cut(s) 94, 481, 787, 906, 1012, 1135
CviQI GTAC 5 cut(s) 489, 581, 813, 903, 1170
DpnI GATC 4 cut(s) 576, 900, 979, 1032
DpnII GATC 4 cut(s) 574, 898, 977, 1030
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 1165
EarI CTCTTC 1 cut(s) 1165
Eco130I CCWWGG 2 cut(s) 1051, 1134
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 461
Eco47III AGCGCT 1 cut(s) 261
Eco57I CTGAAG 2 cut(s) 875, 881
Eco81I CCTNAGG 3 cut(s) 378, 711, 843
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 2 cut(s) 1051, 1134
ErhI CCWWGG 2 cut(s) 1051, 1134
FaeI CATG 6 cut(s) 97, 484, 790, 909, 1015, 1138
FaqI GGGAC 1 cut(s) 1097
FatI CATG 6 cut(s) 93, 480, 786, 905, 1011, 1134
FauI CCCGC 2 cut(s) 643, 896
Fnu4HI GCNGC 5 cut(s) 48, 263, 519, 702, 722
FokI GGATG 1 cut(s) 1171
Fsp4HI GCNGC 5 cut(s) 48, 263, 519, 702, 722
FspBI CTAG 2 cut(s) 936, 956
GlaI GCGC 2 cut(s) 6, 261
GluI GCNGC 5 cut(s) 48, 263, 519, 702, 722
HaeII RGCGCY 2 cut(s) 8, 263
HaeIII GGCC 3 cut(s) 253, 428, 479
HapII CCGG 2 cut(s) 347, 1115
HgaI GACGC 1 cut(s) 586
HhaI GCGC 2 cut(s) 7, 262
Hin1II CATG 6 cut(s) 97, 484, 790, 909, 1015, 1138
Hin6I GCGC 2 cut(s) 5, 260
HinP1I GCGC 2 cut(s) 5, 260
HinfI GANTC 5 cut(s) 82, 272, 383, 668, 1193
HpaII CCGG 2 cut(s) 347, 1115
HphI GGTGA 1 cut(s) 336
Hpy166II GTNNAC 1 cut(s) 696
Hpy188I TCNGA 5 cut(s) 81, 208, 288, 602, 1198
Hpy188III TCNNGA 2 cut(s) 370, 1064
Hpy8I GTNNAC 1 cut(s) 696
HpyCH4III ACNGT 1 cut(s) 797
HpyCH4IV ACGT 1 cut(s) 811
HpyCH4V TGCA 9 cut(s) 47, 304, 696, 704, 768, 924, 1077, 1087, 1128
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 259, 603, 779
HpySE526I ACGT 1 cut(s) 811
Hsp92II CATG 6 cut(s) 97, 484, 790, 909, 1015, 1138
HspAI GCGC 2 cut(s) 5, 260
Kzo9I GATC 4 cut(s) 574, 898, 977, 1030
LmnI GCTCC 1 cut(s) 410
Lsp1109I GCAGC 4 cut(s) 59, 249, 530, 688
LweI GCATC 1 cut(s) 958
MaeI CTAG 2 cut(s) 936, 956
MaeII ACGT 1 cut(s) 811
MaeIII GTNAC 3 cut(s) 331, 342, 958
MalI GATC 4 cut(s) 576, 900, 979, 1032
MboI GATC 4 cut(s) 574, 898, 977, 1030
MboII GAAGA 2 cut(s) 1152, 1173
MflI RGATCY 3 cut(s) 574, 977, 1030
MhlI GDGCHC 2 cut(s) 43, 698
MlsI TGGCCA 1 cut(s) 253
MluCI AATT 9 cut(s) 162, 239, 247, 387, 405, 468, 619, 928, 1149
MluNI TGGCCA 1 cut(s) 253
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 2 cut(s) 82, 830
Mox20I TGGCCA 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 387
MscI TGGCCA 1 cut(s) 253
Msp20I TGGCCA 1 cut(s) 253
MspI CCGG 2 cut(s) 347, 1115
MspR9I CCNGG 2 cut(s) 627, 1115
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 1 cut(s) 724
MwoI GCNNNNNNNGC 4 cut(s) 47, 259, 603, 779
NciI CCSGG 1 cut(s) 1115
NcoI CCATGG 1 cut(s) 1134
NdeII GATC 4 cut(s) 574, 898, 977, 1030
NlaIII CATG 6 cut(s) 97, 484, 790, 909, 1015, 1138
NmuCI GTSAC 1 cut(s) 342
NspI RCATGY 3 cut(s) 790, 909, 1015
PciI ACATGT 2 cut(s) 786, 905
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 4 cut(s) 272, 383, 668, 1193
PfoI TCCNGGA 1 cut(s) 1113
PinAI ACCGGT 1 cut(s) 346
PkrI GCNGC 5 cut(s) 49, 264, 520, 703, 723
Ple19I CGATCG 1 cut(s) 901
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 812
PscI ACATGT 2 cut(s) 786, 905
PsiI TTATAA 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspPI GGNCC 2 cut(s) 427, 461
PstNI CAGNNNCTG 1 cut(s) 988
PsuI RGATCY 3 cut(s) 574, 977, 1030
PvuI CGATCG 1 cut(s) 901
RsaI GTAC 5 cut(s) 490, 582, 814, 904, 1171
RsaNI GTAC 5 cut(s) 489, 581, 813, 903, 1170
SatI GCNGC 5 cut(s) 48, 263, 519, 702, 722
Sau3AI GATC 4 cut(s) 574, 898, 977, 1030
Sau96I GGNCC 2 cut(s) 427, 461
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 627, 1115
SduI GDGCHC 2 cut(s) 43, 698
SfaNI GCATC 1 cut(s) 958
SinI GGWCC 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 9 cut(s) 162, 239, 247, 387, 405, 468, 619, 928, 1149
SsiI CCGC 4 cut(s) 642, 650, 722, 889
SspMI CTAG 2 cut(s) 936, 956
StyD4I CCNGG 2 cut(s) 625, 1113
StyI CCWWGG 2 cut(s) 1051, 1134
TaaI ACNGT 1 cut(s) 797
TaiI ACGT 1 cut(s) 814
TaqI TCGA 3 cut(s) 15, 351, 897
TaqII GACCGA 1 cut(s) 547
TasI AATT 9 cut(s) 162, 239, 247, 387, 405, 468, 619, 928, 1149
TatI WGTACW 2 cut(s) 580, 1169
TauI GCSGC 1 cut(s) 724
TfiI GAWTC 4 cut(s) 272, 383, 668, 1193
TscAI CASTG 7 cut(s) 325, 463, 698, 703, 711, 775, 835
TseFI GTSAC 1 cut(s) 342
TseI GCWGC 4 cut(s) 47, 262, 518, 701
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 5 cut(s) 82, 260, 660, 938, 1173
TspGWI ACGGA 1 cut(s) 631
TspRI CASTG 7 cut(s) 325, 463, 698, 703, 711, 775, 835
VneI GTGCAC 1 cut(s) 694
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 2 cut(s) 239, 619
XceI RCATGY 3 cut(s) 790, 909, 1015
XcmI CCANNNNNNNNNTGG 2 cut(s) 167, 404
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 2 cut(s) 936, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.