Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004542

Physical Location & Seq

Genomic Coordinates Forward (+)

23735308 .. 23735523

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0251600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGCACAGGTTAGCATTCCCAGGGCCTTGGCCTTCTTCTTCATGCAGGTGCTGGTCTTAGTCCTCGCGGCCGCAACTGTCTCGGCTCAGGACAGCGCTCCGGCACCGGCTCCCATGGATGCTGGAGCGGCTTACTCTTTGTCGGTCAATGGTGCGGTTATTGGAGCCTCGATTGCGGTCTCATTCTTCTCCTTGTTCAAGCACTACTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008479 GO:0009451 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046982 GO:0046983 GO:0071704 GO:0090304 GO:0098588 GO:0098805 GO:0101030 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TGT

Protein Analysis

71

Amino Acids

7.3

Weight (kDa)

6.5

Isoelectric Point (pI)

23.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560 FvH4_5g36560
malus_domestica	MD08G1188600.v1.1 MD15G1376400.v1.1
prunus_persica	Prupe.1G523100_v2.0.a1 Prupe.1G523100_v2.0.a1
pyrus_communis	pycom08g16230 pycom15g33630
rosa_chinensis	RchiOBHm_Chr3g0492071 RchiOBHm_Chr7g0242241
rosa_laevigata	RLG00000000904 RLG00000022795
rosa_multiflora	Rmu_sc0003846.1_g000008 Rmu_sc0031707.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392560
rosa_rugosa	Rorug03G0251600 Rorug03G0251700 Rorug07G0314300
rosa_samantha	Rh3AG301800 Rh3BG337600 Rh3BG337700 Rh3CG335200 Rh3DG337300 Rh7AG469700 Rh7BG439500 Rh7CG486300 Rh7DG454700
rosa_wichuraiana	Rw3G026640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc36I	ACCTGC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	128
AccII	CGCG	1 cut(s)	68
AciI	CCGC	5 cut(s)	68, 72, 128, 155, 176
AcoI	YGGCCR	1 cut(s)	69
AfeI	AGCGCT	1 cut(s)	97
AgsI	TTSAA	2 cut(s)	199, 211
AjnI	CCWGG	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	85, 184
AlwNI	CAGNNNCTG	1 cut(s)	52
Aor51HI	AGCGCT	1 cut(s)	97
AoxI	GGCC	3 cut(s)	24, 30, 69
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	85, 184
BfoI	RGCGCY	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	3 cut(s)	69, 72, 129
BlsI	GCNGC	3 cut(s)	70, 73, 130
Bme1390I	CCNGG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	3 cut(s)	105, 111, 166
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	109
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	4 cut(s)	20, 21, 27, 114
Bse118I	RCCGGY	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	4 cut(s)	20, 21, 27, 114
BseGI	GGATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	101
BseX3I	CGGCCG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	26, 32, 71
BshNI	GGYRCC	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	101, 107
BsmAI	GTCTC	2 cut(s)	85, 184
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	3 cut(s)	26, 32, 71
Bso31I	GGTCTC	1 cut(s)	184
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	5 cut(s)	68, 72, 128, 155, 176
BspANI	GGCC	3 cut(s)	26, 32, 71
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	3 cut(s)	105, 111, 166
BspMI	ACCTGC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	184
BsrBI	CCGCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	4 cut(s)	20, 21, 27, 114
BssT1I	CCWWGG	2 cut(s)	27, 114
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	58, 87
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	68
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstMAI	GTCTC	2 cut(s)	85, 184
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 173
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	68
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstZI	CGGCCG	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	26, 32, 71
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	124
BveI	ACCTGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	52
CciNI	GCGGCCGC	1 cut(s)	69
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	24
CviAII	CATG	2 cut(s)	43, 115
CviJI	RGCY	7 cut(s)	26, 32, 71, 86, 110, 131, 167
CviKI_1	RGCY	7 cut(s)	26, 32, 71, 86, 110, 131, 167
DdeI	CTNAG	2 cut(s)	58, 87
EaeI	YGGCCR	1 cut(s)	69
EagI	CGGCCG	1 cut(s)	69
EclXI	CGGCCG	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	27, 114
Eco31I	GGTCTC	1 cut(s)	184
Eco47III	AGCGCT	1 cut(s)	97
Eco52I	CGGCCG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	2 cut(s)	27, 114
ErhI	CCWWGG	2 cut(s)	27, 114
FaeI	CATG	2 cut(s)	46, 118
FaiI	YATR	2 cut(s)	44, 116
FalI	AAGNNNNNCTT	1 cut(s)	191
FatI	CATG	2 cut(s)	42, 114
Fnu4HI	GCNGC	3 cut(s)	69, 72, 129
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	3 cut(s)	69, 72, 129
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	3 cut(s)	69, 72, 129
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	26, 32, 71
HapII	CCGG	2 cut(s)	101, 107
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	46, 118
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HpaII	CCGG	2 cut(s)	101, 107
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 173
HpyF3I	CTNAG	2 cut(s)	58, 87
Hsp92II	CATG	2 cut(s)	46, 118
HspAI	GCGC	1 cut(s)	96
LmnI	GCTCC	4 cut(s)	103, 115, 125, 164
LpnPI	CCDG	8 cut(s)	7, 32, 34, 38, 74, 108, 114, 120
LweI	GCATC	1 cut(s)	109
MbiI	CCGCTC	1 cut(s)	128
MboII	GAAGA	3 cut(s)	28, 31, 178
MluCI	AATT	1 cut(s)	211
MnlI	CCTC	2 cut(s)	74, 178
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	2 cut(s)	101, 107
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	128, 173
NcoI	CCATGG	1 cut(s)	114
NlaIII	CATG	2 cut(s)	46, 118
NlaIV	GGNNCC	3 cut(s)	105, 111, 166
NmeAIII	GCCGAG	1 cut(s)	62
NotI	GCGGCCGC	1 cut(s)	69
PaqCI	CACCTGC	1 cut(s)	37
PasI	CCCWGGG	1 cut(s)	21
PctI	GAATGC	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	70, 73, 130
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	3 cut(s)	105, 111, 166
PspPI	GGNCC	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	47
SatI	GCNGC	3 cut(s)	69, 72, 129
Sau96I	GGNCC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	2 cut(s)	12, 51
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	5 cut(s)	68, 72, 128, 155, 176
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	2 cut(s)	27, 114
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	170
TaqII	GACCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	211
TauI	GCSGC	3 cut(s)	71, 74, 131
TspDTI	ATGAA	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.