Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003879

Physical Location & Seq

Genomic Coordinates Forward (+)

425143 .. 426281

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1005600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCAGGGAACAGAAATCCAGCTTGGCTTAGCTGTTGAATGTCAGAAGGCCACACTATCAGTTAAAAGGAGATTGGCATGTGAACAGTTGACCTATTTTAGTCAGGCCTATCACTGCTTGTCAGGATGTGACATGAATAACTGGTGTGAGAAGAAGCATATCTGGTTCATCAATTGGAAATTTCTCGAGTCAAAGGCTGCATCGTATTACTATCACGGTCTGATCCTTGACAATGGCAATGAACCGTCCTGCCACGTTAGCGCTGCATGTTGTTTTCTTGCGGCGGAAGAACTTCTATCAGAGAGCAGGAAGGCTTGCTTAACCTTTTGCCTTGCAGCTCCAGTTACCAGGGCTCCTCCACTCTGGGGAGCTATGAGGCATTTGCATCAGAAAATTCCTGAAGTTGCAACAAGGAAATCCCAGATGTATGGCTACCTTTTAGAACAAGAAAAGGTTCTACAAACATTGCCTGACCTGCCAGAATTTCAACTGTCATTAAGACCTGATGACTATCATCTACCCGATATCGACCCGGCCTGGGATTCCGAAAAGTGGGAAGCTGAAGGCCAGACCTTGAAAGCGCACCCAAAAGACAGCGAAGACGAGACAGAGACTCCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRO1

Protein Analysis

208

Amino Acids

23.67

Weight (kDa)

5.28

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14020 AT5G14020 AT5G14020 AT5G14020 AT5G14020 AT5G14020 AT5G14020
fragaria_vesca	FvH4_6g54080 FvH4_6g54080 FvH4_6g54080 FvH4_6g54080 FvH4_6g54080 FvH4_6g54080
malus_domestica	MD09G1005600.v1.1 MD17G1009700.v1.1
prunus_persica	Prupe.3G311400_v2.0.a1 Prupe.3G311400_v2.0.a1 Prupe.3G311400_v2.0.a1
pyrus_communis	pycom17g00430
rosa_chinensis	RchiOBHm_Chr2g0176271
rosa_laevigata	RLG00000022396
rosa_multiflora	Rmu_sc0000405.1_g000022
rosa_roxburghii	Rroxscaffold_2G00076630
rosa_rugosa	Rorug02G0592500 Rorug02G0592600 Rorug02G0592700 Rorug02G0592800 Rorug02G0592800 Rorug02G0592800
rosa_samantha	Rh2AG670900 Rh2BG682400 Rh2CG645200 Rh2DG696000
rosa_wichuraiana	Rw2G055040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	483
AciI	CCGC	2 cut(s)	281, 284
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	3 cut(s)	179, 393, 482
AcuI	CTGAAG	2 cut(s)	420, 582
AfeI	AGCGCT	1 cut(s)	262
AfiI	CCNNNNNNNGG	3 cut(s)	365, 538, 552
AgsI	TTSAA	3 cut(s)	38, 488, 577
AjnI	CCWGG	2 cut(s)	347, 536
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AluBI	AGCT	5 cut(s)	22, 32, 338, 371, 560
AluI	AGCT	5 cut(s)	22, 32, 338, 371, 560
Alw26I	GTCTC	2 cut(s)	599, 605
AlwI	GGATC	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	185
Aor51HI	AGCGCT	1 cut(s)	262
AoxI	GGCC	4 cut(s)	48, 105, 534, 565
ApeKI	GCWGC	3 cut(s)	197, 263, 335
ApoI	RAATTY	3 cut(s)	179, 393, 482
Asp700I	GAANNNNTTC	2 cut(s)	291, 453
AspLEI	GCGC	2 cut(s)	263, 583
AsuC2I	CCSGG	1 cut(s)	533
AvaI	CYCGRG	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	3 cut(s)	184, 250, 347
BciT130I	CCWGG	2 cut(s)	349, 538
BcnI	CCSGG	1 cut(s)	533
BcoDI	GTCTC	2 cut(s)	599, 605
BfoI	RGCGCY	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	483
BisI	GCNGC	4 cut(s)	198, 264, 282, 336
BlpI	GCTNAGC	1 cut(s)	28
BlsI	GCNGC	4 cut(s)	199, 265, 283, 337
Bme1390I	CCNGG	3 cut(s)	349, 533, 538
BmeT110I	CYCGRG	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	3 cut(s)	349, 533, 538
BmsI	GCATC	2 cut(s)	209, 394
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	2 cut(s)	324, 600
Bpu1102I	GCTNAGC	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	348, 537
BsaXI	ACNNNNNCTCC	3 cut(s)	337, 367, 598
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 538, 552
Bse1I	ACTGG	2 cut(s)	146, 341
Bse3DI	GCAATG	2 cut(s)	244, 464
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	2 cut(s)	349, 538
BseDI	CCNNGG	2 cut(s)	348, 537
BseGI	GGATG	1 cut(s)	131
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	365, 538, 552
BseMI	GCAATG	2 cut(s)	244, 464
BseNI	ACTGG	2 cut(s)	146, 341
BseRI	GAGGAG	1 cut(s)	345
BseXI	GCAGC	3 cut(s)	184, 250, 347
BshFI	GGCC	4 cut(s)	50, 107, 536, 567
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	533
BslI	CCNNNNNNNGG	3 cut(s)	365, 538, 552
BsmAI	GTCTC	2 cut(s)	599, 605
BsnI	GGCC	4 cut(s)	50, 107, 536, 567
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	222
Bsp1720I	GCTNAGC	1 cut(s)	28
BspACI	CCGC	2 cut(s)	281, 284
BspANI	GGCC	4 cut(s)	50, 107, 536, 567
BspLI	GGNNCC	1 cut(s)	354
BspMI	ACCTGC	1 cut(s)	483
BspPI	GGATC	1 cut(s)	217
BsrDI	GCAATG	2 cut(s)	244, 464
BsrI	ACTGG	2 cut(s)	146, 341
BssECI	CCNNGG	2 cut(s)	348, 537
BssMI	GATC	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	349, 538
Bst4CI	ACNGT	4 cut(s)	87, 218, 246, 492
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	2 cut(s)	263, 583
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	2 cut(s)	599, 605
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 475
BstNI	CCWGG	2 cut(s)	349, 538
BstNSI	RCATGY	2 cut(s)	81, 270
BstSCI	CCNGG	3 cut(s)	347, 531, 536
BstV1I	GCAGC	3 cut(s)	184, 250, 347
BstV2I	GAAGAC	1 cut(s)	606
BstXI	CCANNNNNNTGG	1 cut(s)	428
BsuRI	GGCC	4 cut(s)	50, 107, 536, 567
BtsCI	GGATG	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
BveI	ACCTGC	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	316
CfoI	GCGC	2 cut(s)	263, 583
CviAII	CATG	3 cut(s)	78, 133, 267
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	299
Eco147I	AGGCCT	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	526
Eco47III	AGCGCT	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	420, 582
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	347, 536
EcoRV	GATATC	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	355
FaeI	CATG	3 cut(s)	81, 136, 270
FaiI	YATR	6 cut(s)	79, 134, 159, 268, 374, 429
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	3 cut(s)	77, 132, 266
Fnu4HI	GCNGC	4 cut(s)	198, 264, 282, 336
FokI	GGATG	1 cut(s)	138
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	4 cut(s)	198, 264, 282, 336
GlaI	GCGC	2 cut(s)	262, 582
GluI	GCNGC	4 cut(s)	198, 264, 282, 336
GsuI	CTGGAG	2 cut(s)	324, 600
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	4 cut(s)	50, 107, 536, 567
HapII	CCGG	1 cut(s)	533
HhaI	GCGC	2 cut(s)	263, 583
Hin1II	CATG	3 cut(s)	81, 136, 270
Hin6I	GCGC	2 cut(s)	261, 581
HinP1I	GCGC	2 cut(s)	261, 581
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	3 cut(s)	188, 542, 613
HpaII	CCGG	1 cut(s)	533
Hpy166II	GTNNAC	2 cut(s)	83, 90
Hpy188I	TCNGA	5 cut(s)	45, 222, 301, 390, 547
Hpy188III	TCNNGA	4 cut(s)	123, 185, 398, 617
Hpy8I	GTNNAC	2 cut(s)	83, 90
HpyAV	CCTTC	3 cut(s)	40, 304, 557
HpyCH4III	ACNGT	4 cut(s)	87, 218, 246, 492
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	6 cut(s)	4, 200, 266, 335, 385, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 475
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	81, 136, 270
HspAI	GCGC	2 cut(s)	261, 581
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	3 cut(s)	343, 358, 368
Lsp1109I	GCAGC	3 cut(s)	184, 250, 347
LweI	GCATC	2 cut(s)	209, 394
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	128, 343
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	3 cut(s)	163, 299, 611
MfeI	CAATTG	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	4 cut(s)	172, 179, 393, 482
MlyI	GAGTC	2 cut(s)	197, 607
MnlI	CCTC	2 cut(s)	366, 369
MroXI	GAANNNNTTC	2 cut(s)	291, 453
MseI	TTAA	3 cut(s)	63, 320, 497
MspI	CCGG	1 cut(s)	533
MspR9I	CCNGG	3 cut(s)	349, 533, 538
MunI	CAATTG	1 cut(s)	172
MvaI	CCWGG	2 cut(s)	349, 538
MwoI	GCNNNNNNNGC	2 cut(s)	258, 475
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	3 cut(s)	81, 136, 270
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	128
NspI	RCATGY	2 cut(s)	81, 270
PaeR7I	CTCGAG	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	107
PdmI	GAANNNNTTC	2 cut(s)	291, 453
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	4 cut(s)	199, 265, 283, 337
PleI	GAGTC	2 cut(s)	196, 607
PpsI	GAGTC	2 cut(s)	196, 607
Psp6I	CCWGG	2 cut(s)	347, 536
PspGI	CCWGG	2 cut(s)	347, 536
PspN4I	GGNNCC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	63, 320, 497
SatI	GCNGC	4 cut(s)	198, 264, 282, 336
Sau3AI	GATC	1 cut(s)	222
SchI	GAGTC	2 cut(s)	197, 607
ScrFI	CCNGG	3 cut(s)	349, 533, 538
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	209, 394
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	4 cut(s)	172, 179, 393, 482
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	2 cut(s)	281, 284
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	347, 531, 536
TaaI	ACNGT	4 cut(s)	87, 218, 246, 492
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	186, 528
TasI	AATT	4 cut(s)	172, 179, 393, 482
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	3 cut(s)	63, 320, 497
Tru9I	TTAA	3 cut(s)	63, 320, 497
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	3 cut(s)	197, 263, 335
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	3 cut(s)	149, 157, 255
TspRI	CASTG	1 cut(s)	119
XapI	RAATTY	3 cut(s)	179, 393, 482
XceI	RCATGY	2 cut(s)	81, 270
XhoI	CTCGAG	1 cut(s)	185
XmnI	GAANNNNTTC	2 cut(s)	291, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.