Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003879

Physical Location & Seq

Genomic Coordinates Reverse (-)

81563796 .. 81567444

Gene Structure 3649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG645200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGTGTGCTAGTTCTATATATGCTGCTGTTGGAACAAAGAAGAAGTTGTCTATCCCTGAAGTTGTCGTCTTCGTCCCATCCACTCGCATTCCTGCACAATCTGATCTTCAAAAGCAGCTTAGAGGCCTAATTCCAAAAGATATTGCTGACAGATTATCTTCGCTTCGTAATCAGATTGTCTTTGTGGCAGAGGACACTGATGGATCTGCTATACCTGAACTCCGCCGAGGGCTAGAGGAATACTTGTCTCTTTTAATTGGCCTCACTAAAAAAGAATATGGTCTTGAGGGATTGGTTGAATTCAAGTGGAGAAGTTTAGCGGGTGGGAAACAACAGGAAGCCTCCTCCTCATGTATAGCAAACTCTTGGTTTGAAGTACTGTCTGTTGTTCACATGATGGCTATGCTTGCGTTGTCCGAAGCTGACACATTGATGATTCCAAAGGACCATTCTGGCTCTAATATAAGGACTGTATCTTCAGATTGCAAGAGGGAAGCTGTGGACTTATTGCTTAAGGCAACAGGGTATTTGGAATTCTGTGTCCGGGATGTACTGGTTCATATACCACCTGAAATCAAGAAAAATTTTCCGAAAGATTTGCAGGATGGTGTGTTGGAGGCCATTTCCTTTCAAACTCTTGGCCAGGGAACTGAAATTCAGCTTGGTTTAGCTGTTGACTGTCAGAAGGCTACTTTATCAGTTAAAAGGAGATTGGCCTGTGAACAATTGAGCTATTTCAGCCAGGCTTATCACTGCTTGTCAGGATATGATCACATCAACAACGGGTATGGAAAGAAGCATATGTGGTTCATCAAATGGAAATTTCTGGAGTCAAAGGCTGCAGCTTACTACTTCCATGGTCTAATGGTTGACAAGGGTAATGAACCATCATGCCATGTTAGCGCTGTATGTTGTTTTCTTGCCGCAGAAGAAATTCTATCAGAGAGCAAGAAAGCTTGCTTTACCTTTTGCCTTGCAGCTCCAGTTACCAGGGCTGCTCCACTGTGGGGAGCTATGAAGCATTTGCATCAGAAAATCCTCGAAGTTGCAGCAAGGAAATCCCAGATGTATGGCTACCTCTTAGAACAAGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRO1

Protein Analysis

366

Amino Acids

40.65

Weight (kDa)

8.17

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14020 AT5G14020 AT5G14020 AT5G14020 AT5G14020 AT5G14020 AT5G14020
fragaria_vesca	FvH4_6g54080 FvH4_6g54080 FvH4_6g54080 FvH4_6g54080 FvH4_6g54080 FvH4_6g54080
malus_domestica	MD09G1005600.v1.1 MD17G1009700.v1.1
prunus_persica	Prupe.3G311400_v2.0.a1 Prupe.3G311400_v2.0.a1 Prupe.3G311400_v2.0.a1
pyrus_communis	pycom17g00430
rosa_chinensis	RchiOBHm_Chr2g0176271
rosa_laevigata	RLG00000022396
rosa_multiflora	Rmu_sc0000405.1_g000022
rosa_roxburghii	Rroxscaffold_2G00076630
rosa_rugosa	Rorug02G0592500 Rorug02G0592600 Rorug02G0592700 Rorug02G0592800 Rorug02G0592800 Rorug02G0592800
rosa_samantha	Rh2AG670900 Rh2BG682400 Rh2CG645200 Rh2DG696000
rosa_wichuraiana	Rw2G055040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	226, 323, 927
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	643
AcsI	RAATTY	6 cut(s)	302, 536, 586, 657, 824, 936
AcuI	CTGAAG	2 cut(s)	81, 465
AfaI	GTAC	2 cut(s)	381, 555
AfeI	AGCGCT	1 cut(s)	907
AfiI	CCNNNNNNNGG	1 cut(s)	1010
AflII	CTTAAG	1 cut(s)	515
AgsI	TTSAA	5 cut(s)	113, 302, 307, 377, 635
AjnI	CCWGG	3 cut(s)	645, 744, 992
AjuI	GAANNNNNNNTTGG	4 cut(s)	436, 468, 648, 680
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	214
Aor51HI	AGCGCT	1 cut(s)	907
AoxI	GGCC	5 cut(s)	127, 262, 621, 643, 717
ApeKI	GCWGC	7 cut(s)	26, 118, 842, 845, 980, 998, 1052
ApoI	RAATTY	6 cut(s)	302, 536, 586, 657, 824, 936
Asp700I	GAANNNNTTC	1 cut(s)	936
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	1 cut(s)	448
AsuC2I	CCSGG	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	448
BalI	TGGCCA	1 cut(s)	645
BbsI	GAAGAC	1 cut(s)	64
BbvI	GCAGC	7 cut(s)	13, 130, 829, 857, 985, 992, 1064
BccI	CCATC	5 cut(s)	88, 197, 394, 602, 898
BcgI	CGANNNNNNTGC	2 cut(s)	583, 617
BciT130I	CCWGG	3 cut(s)	647, 746, 994
BclI	TGATCA	1 cut(s)	772
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	2 cut(s)	12, 236
BfmI	CTRYAG	1 cut(s)	843
BfoI	RGCGCY	1 cut(s)	909
BfrI	CTTAAG	1 cut(s)	515
BisI	GCNGC	8 cut(s)	27, 119, 843, 846, 927, 981, 999, 1053
BlsI	GCNGC	8 cut(s)	28, 120, 844, 847, 928, 982, 1000, 1054
BmcAI	AGTACT	1 cut(s)	381
Bme1390I	CCNGG	4 cut(s)	548, 647, 746, 994
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmrFI	CCNGG	4 cut(s)	548, 647, 746, 994
BmsI	GCATC	1 cut(s)	1039
BpiI	GAAGAC	1 cut(s)	64
BpmI	CTGGAG	2 cut(s)	851, 969
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	4 cut(s)	229, 646, 859, 993
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	1010
Bse1I	ACTGG	2 cut(s)	561, 986
BseBI	CCWGG	3 cut(s)	647, 746, 994
BseDI	CCNNGG	4 cut(s)	229, 646, 859, 993
BseGI	GGATG	3 cut(s)	80, 556, 613
BseLI	CCNNNNNNNGG	1 cut(s)	1010
BseNI	ACTGG	2 cut(s)	561, 986
BseRI	GAGGAG	2 cut(s)	337, 340
BseXI	GCAGC	7 cut(s)	13, 130, 829, 857, 985, 992, 1064
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	5 cut(s)	129, 264, 623, 645, 719
BsiSI	CCGG	1 cut(s)	547
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	1010
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	5 cut(s)	129, 264, 623, 645, 719
Bsp143I	GATC	3 cut(s)	106, 206, 772
Bsp19I	CCATGG	1 cut(s)	859
BspACI	CCGC	3 cut(s)	226, 323, 927
BspANI	GGCC	5 cut(s)	129, 264, 623, 645, 719
BspMAI	CTGCAG	1 cut(s)	847
BspPI	GGATC	1 cut(s)	214
BspTI	CTTAAG	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	561, 986
BssECI	CCNNGG	4 cut(s)	229, 646, 859, 993
BssMI	GATC	3 cut(s)	106, 206, 772
BssT1I	CCWWGG	1 cut(s)	859
Bst2UI	CCWGG	3 cut(s)	647, 746, 994
Bst4CI	ACNGT	4 cut(s)	384, 475, 683, 1008
BstAFI	CTTAAG	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	411, 961
BstDEI	CTNAG	2 cut(s)	122, 1084
BstDSI	CCRYGG	1 cut(s)	859
BstF5I	GGATG	3 cut(s)	80, 556, 613
BstH2I	RGCGCY	1 cut(s)	909
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	3 cut(s)	109, 209, 775
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	3 cut(s)	106, 206, 772
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 741, 903
BstNI	CCWGG	3 cut(s)	647, 746, 994
BstSCI	CCNGG	4 cut(s)	546, 645, 744, 992
BstSFI	CTRYAG	1 cut(s)	843
BstV1I	GCAGC	7 cut(s)	13, 130, 829, 857, 985, 992, 1064
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	1073
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	5 cut(s)	129, 264, 623, 645, 719
BtgI	CCRYGG	1 cut(s)	859
BtsCI	GGATG	3 cut(s)	80, 556, 613
BtsI	GCAGTG	1 cut(s)	754
BtsIMutI	CAGTG	3 cut(s)	198, 754, 1004
Cac8I	GCNNGC	2 cut(s)	411, 961
CfoI	GCGC	1 cut(s)	908
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	2 cut(s)	380, 554
CviAII	CATG	5 cut(s)	354, 397, 860, 894, 899
CviQI	GTAC	2 cut(s)	380, 554
DdeI	CTNAG	2 cut(s)	122, 1084
DpnI	GATC	3 cut(s)	108, 208, 774
DpnII	GATC	3 cut(s)	106, 206, 772
EaeI	YGGCCR	1 cut(s)	643
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	859
Eco147I	AGGCCT	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	448
Eco47III	AGCGCT	1 cut(s)	907
Eco57I	CTGAAG	2 cut(s)	81, 465
EcoRI	GAATTC	2 cut(s)	302, 536
EcoRII	CCWGG	3 cut(s)	645, 744, 992
EcoT14I	CCWWGG	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	859
FaeI	CATG	5 cut(s)	357, 400, 863, 897, 902
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	5 cut(s)	353, 396, 859, 893, 898
FauI	CCCGC	1 cut(s)	316
FauNDI	CATATG	1 cut(s)	804
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	8 cut(s)	27, 119, 843, 846, 927, 981, 999, 1053
FokI	GGATG	3 cut(s)	67, 563, 620
Fsp4HI	GCNGC	8 cut(s)	27, 119, 843, 846, 927, 981, 999, 1053
FspBI	CTAG	2 cut(s)	12, 236
GlaI	GCGC	1 cut(s)	907
GluI	GCNGC	8 cut(s)	27, 119, 843, 846, 927, 981, 999, 1053
GsuI	CTGGAG	2 cut(s)	851, 969
HaeII	RGCGCY	1 cut(s)	909
HaeIII	GGCC	5 cut(s)	129, 264, 623, 645, 719
HapII	CCGG	1 cut(s)	547
HhaI	GCGC	1 cut(s)	908
Hin1II	CATG	5 cut(s)	357, 400, 863, 897, 902
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HincII	GTYRAC	2 cut(s)	679, 874
HindII	GTYRAC	2 cut(s)	679, 874
HindIII	AAGCTT	1 cut(s)	957
HinfI	GANTC	2 cut(s)	439, 833
HpaII	CCGG	1 cut(s)	547
Hpy166II	GTNNAC	5 cut(s)	394, 505, 679, 725, 874
Hpy188I	TCNGA	8 cut(s)	106, 177, 421, 484, 594, 687, 946, 1035
Hpy188III	TCNNGA	4 cut(s)	287, 580, 765, 830
Hpy8I	GTNNAC	5 cut(s)	394, 505, 679, 725, 874
HpyAV	CCTTC	1 cut(s)	682
HpyCH4III	ACNGT	4 cut(s)	384, 475, 683, 1008
HpyCH4V	TGCA	7 cut(s)	98, 489, 604, 845, 980, 1030, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 741, 903
HpyF3I	CTNAG	2 cut(s)	122, 1084
Hsp92II	CATG	5 cut(s)	357, 400, 863, 897, 902
HspAI	GCGC	1 cut(s)	906
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	3 cut(s)	106, 206, 772
LmnI	GCTCC	3 cut(s)	988, 1006, 1013
Lsp1109I	GCAGC	7 cut(s)	13, 130, 829, 857, 985, 992, 1064
LweI	GCATC	1 cut(s)	1039
MaeI	CTAG	2 cut(s)	12, 236
MaeIII	GTNAC	1 cut(s)	988
MalI	GATC	3 cut(s)	108, 208, 774
MboI	GATC	3 cut(s)	106, 206, 772
MboII	GAAGA	6 cut(s)	55, 64, 101, 153, 471, 944
MfeI	CAATTG	1 cut(s)	728
MflI	RGATCY	1 cut(s)	206
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	9 cut(s)	132, 258, 302, 536, 586, 657, 728, 824, 936
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	842
MmeI	TCCRAC	2 cut(s)	13, 597
Mox20I	TGGCCA	1 cut(s)	645
MroXI	GAANNNNTTC	1 cut(s)	936
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	3 cut(s)	257, 516, 705
MslI	CAYNNNNRTG	1 cut(s)	434
Msp20I	TGGCCA	1 cut(s)	645
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	1 cut(s)	547
MspR9I	CCNGG	4 cut(s)	548, 647, 746, 994
MunI	CAATTG	1 cut(s)	728
Mva1269I	GAATGC	1 cut(s)	90
MvaI	CCWGG	3 cut(s)	647, 746, 994
MwoI	GCNNNNNNNGC	3 cut(s)	410, 741, 903
NciI	CCSGG	1 cut(s)	548
NcoI	CCATGG	1 cut(s)	859
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	3 cut(s)	106, 206, 772
NlaIII	CATG	5 cut(s)	357, 400, 863, 897, 902
NmeAIII	GCCGAG	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	129
PctI	GAATGC	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	936
PfeI	GAWTC	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	546
PkrI	GCNGC	8 cut(s)	28, 120, 844, 847, 928, 982, 1000, 1054
PleI	GAGTC	1 cut(s)	841
PpsI	GAGTC	1 cut(s)	841
Psp6I	CCWGG	3 cut(s)	645, 744, 992
PspGI	CCWGG	3 cut(s)	645, 744, 992
PspPI	GGNCC	1 cut(s)	448
PstI	CTGCAG	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	2 cut(s)	381, 555
RsaNI	GTAC	2 cut(s)	380, 554
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	3 cut(s)	257, 516, 705
SatI	GCNGC	8 cut(s)	27, 119, 843, 846, 927, 981, 999, 1053
Sau3AI	GATC	3 cut(s)	106, 206, 772
Sau96I	GGNCC	1 cut(s)	448
ScaI	AGTACT	1 cut(s)	381
SchI	GAGTC	1 cut(s)	842
ScrFI	CCNGG	4 cut(s)	548, 647, 746, 994
SfaNI	GCATC	1 cut(s)	1039
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	287, 515
SmoI	CTYRAG	2 cut(s)	287, 515
Sse9I	AATT	9 cut(s)	132, 258, 302, 536, 586, 657, 728, 824, 936
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	3 cut(s)	226, 323, 927
SspMI	CTAG	2 cut(s)	12, 236
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	4 cut(s)	546, 645, 744, 992
StyI	CCWWGG	1 cut(s)	859
TaaI	ACNGT	4 cut(s)	384, 475, 683, 1008
TaqI	TCGA	1 cut(s)	1044
TasI	AATT	9 cut(s)	132, 258, 302, 536, 586, 657, 728, 824, 936
TatI	WGTACW	2 cut(s)	379, 553
TauI	GCSGC	1 cut(s)	929
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	3 cut(s)	257, 516, 705
Tru9I	TTAA	3 cut(s)	257, 516, 705
TscAI	CASTG	3 cut(s)	205, 761, 1011
TseI	GCWGC	7 cut(s)	26, 118, 842, 845, 980, 998, 1052
TspDTI	ATGAA	4 cut(s)	551, 802, 900, 1034
TspRI	CASTG	3 cut(s)	205, 761, 1011
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	6 cut(s)	302, 536, 586, 657, 824, 936
XmnI	GAANNNNTTC	1 cut(s)	936
XspI	CTAG	2 cut(s)	12, 236
ZrmI	AGTACT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.