Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000405.1

Orthogroup ID

OG0003879

Physical Location & Seq

Genomic Coordinates Reverse (-)

106703 .. 109233

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000405.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

atggggtgtgctagttctatatatgctgctgttggaacaaagaagaagttatctatccctgaagttgtcgtcttcgtcccatccactcgcattcctgcacaatctgatcttcaaaagcagcttagaggcctaattccaaaagatattgctgacagattgtcttcgcttcgtaatcagattgtctttgtggcagaggacactgatggatctgctatacctgaactccgccgagggctagaggaatacttgtctcttttaattggcctcactaaaaaagaatatggtcttgagggattggttgaattcaagtggagaagtttagcgggtgggaaacaagaagcctcctcctcatgtatagcaaactcttggtttgaagtactgtctgttgttcacatgatggctatgcttgcgttgtcggaagctgacacattgatgattccaaaggaccattctggctctaatataaggactgtatcttcagattgcaagagggaagctgtggacttattgcttaaggcaacagggtatttggaattctgtgtccgggatgtactggttcatataccacctgaaatcaagaaaaattttccgaaggatttgcaggatggtgtgttggaggccatttcctttcaaactcttggccagggaactgaaattcagcttggtttagctgttgactgtcagaaggctactttatcagttaaaaggagattggcctgtgaacaattgagctatttcagccaggcttatcactgcttgtcaggatatgatcacatcaacaacgggtatggaaagaagcatatgtggttcatcaaatggaaatttctggagtcaaaggctgcagcttactacttccatggtctaatggttgacaagggtaatgaaccatcatgccatgttagcgctgtatgttgttttcttgccgcagaagaaattctatcagagagcaagaaagcttgctttaccttttgccttgcagctccagttaccagggctgctccactgtggggagctatgaagcatttgcatcagaaaatccccgaagttgcagcaaggaaatcccagatgtatggctacctcttagaacaagacaaagttcttcaagcattgcctgacctaccagaatttcaactgtcattaagacctgatgactatgaactacctgaaatcgacccagcttgggagtcgggaaaatgggaaactcaaagccagagcttaaaagagcacctagatgatagcgatgacaacgatgagactgaaactgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRO1

Protein Analysis

422

Amino Acids

47.11

Weight (kDa)

5.49

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14020 AT5G14020 AT5G14020 AT5G14020 AT5G14020 AT5G14020 AT5G14020
fragaria_vesca	FvH4_6g54080 FvH4_6g54080 FvH4_6g54080 FvH4_6g54080 FvH4_6g54080 FvH4_6g54080
malus_domestica	MD09G1005600.v1.1 MD17G1009700.v1.1
prunus_persica	Prupe.3G311400_v2.0.a1 Prupe.3G311400_v2.0.a1 Prupe.3G311400_v2.0.a1
pyrus_communis	pycom17g00430
rosa_chinensis	RchiOBHm_Chr2g0176271
rosa_laevigata	RLG00000022396
rosa_multiflora	Rmu_sc0000405.1_g000022
rosa_roxburghii	Rroxscaffold_2G00076630
rosa_rugosa	Rorug02G0592500 Rorug02G0592600 Rorug02G0592700 Rorug02G0592800 Rorug02G0592800 Rorug02G0592800
rosa_samantha	Rh2AG670900 Rh2BG682400 Rh2CG645200 Rh2DG696000
rosa_wichuraiana	Rw2G055040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	226, 323, 924
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	640
AcsI	RAATTY	7 cut(s)	302, 533, 583, 654, 821, 933, 1124
AcuI	CTGAAG	2 cut(s)	81, 462
AfaI	GTAC	2 cut(s)	378, 552
AfeI	AGCGCT	1 cut(s)	904
AfiI	CCNNNNNNNGG	2 cut(s)	1007, 1180
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	7 cut(s)	113, 302, 307, 374, 632, 1103, 1130
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	3 cut(s)	642, 741, 989
AjuI	GAANNNNNNNTTGG	4 cut(s)	433, 465, 645, 677
Alw21I	GWGCWC	1 cut(s)	1227
Alw26I	GTCTC	2 cut(s)	255, 1247
AlwI	GGATC	1 cut(s)	214
Aor51HI	AGCGCT	1 cut(s)	904
AoxI	GGCC	5 cut(s)	127, 262, 618, 640, 714
ApeKI	GCWGC	7 cut(s)	26, 118, 839, 842, 977, 995, 1049
ApoI	RAATTY	7 cut(s)	302, 533, 583, 654, 821, 933, 1124
Asp700I	GAANNNNTTC	1 cut(s)	933
AspLEI	GCGC	1 cut(s)	905
AspS9I	GGNCC	1 cut(s)	445
AsuC2I	CCSGG	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	642
BbsI	GAAGAC	2 cut(s)	64, 153
Bbv12I	GWGCWC	1 cut(s)	1227
BbvI	GCAGC	7 cut(s)	13, 130, 826, 854, 982, 989, 1061
BccI	CCATC	5 cut(s)	88, 197, 391, 599, 895
BcgI	CGANNNNNNTGC	2 cut(s)	580, 614
BciT130I	CCWGG	3 cut(s)	644, 743, 991
BclI	TGATCA	1 cut(s)	769
BcnI	CCSGG	1 cut(s)	545
BcoDI	GTCTC	2 cut(s)	255, 1247
BfaI	CTAG	3 cut(s)	12, 236, 1229
BfmI	CTRYAG	1 cut(s)	840
BfoI	RGCGCY	1 cut(s)	906
BfrI	CTTAAG	1 cut(s)	512
BisI	GCNGC	8 cut(s)	27, 119, 840, 843, 924, 978, 996, 1050
BlsI	GCNGC	8 cut(s)	28, 120, 841, 844, 925, 979, 997, 1051
BmcAI	AGTACT	1 cut(s)	378
Bme1390I	CCNGG	4 cut(s)	545, 644, 743, 991
Bme18I	GGWCC	1 cut(s)	445
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	445
BmrFI	CCNGG	4 cut(s)	545, 644, 743, 991
BmsI	GCATC	1 cut(s)	1036
BpiI	GAAGAC	2 cut(s)	64, 153
BpmI	CTGGAG	2 cut(s)	848, 966
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	545
BsaJI	CCNNGG	4 cut(s)	229, 643, 856, 990
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	1007, 1180
Bse1I	ACTGG	2 cut(s)	558, 983
Bse3DI	GCAATG	1 cut(s)	1106
BseBI	CCWGG	3 cut(s)	644, 743, 991
BseDI	CCNNGG	4 cut(s)	229, 643, 856, 990
BseGI	GGATG	3 cut(s)	80, 553, 610
BseLI	CCNNNNNNNGG	2 cut(s)	1007, 1180
BseMI	GCAATG	1 cut(s)	1106
BseMII	CTCAG	1 cut(s)	1254
BseNI	ACTGG	2 cut(s)	558, 983
BseRI	GAGGAG	2 cut(s)	334, 337
BseXI	GCAGC	7 cut(s)	13, 130, 826, 854, 982, 989, 1061
BseYI	CCCAGC	1 cut(s)	1174
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	5 cut(s)	129, 264, 620, 642, 716
BsiHKAI	GWGCWC	1 cut(s)	1227
BsiSI	CCGG	1 cut(s)	544
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	1007, 1180
BsmAI	GTCTC	2 cut(s)	255, 1247
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	5 cut(s)	129, 264, 620, 642, 716
Bsp1286I	GDGCHC	1 cut(s)	1227
Bsp143I	GATC	3 cut(s)	106, 206, 769
Bsp19I	CCATGG	1 cut(s)	856
BspACI	CCGC	3 cut(s)	226, 323, 924
BspANI	GGCC	5 cut(s)	129, 264, 620, 642, 716
BspCNI	CTCAG	1 cut(s)	1255
BspMAI	CTGCAG	1 cut(s)	844
BspPI	GGATC	1 cut(s)	214
BspTI	CTTAAG	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	1106
BsrI	ACTGG	2 cut(s)	558, 983
BssECI	CCNNGG	4 cut(s)	229, 643, 856, 990
BssMI	GATC	3 cut(s)	106, 206, 769
BssT1I	CCWWGG	1 cut(s)	856
Bst2UI	CCWGG	3 cut(s)	644, 743, 991
Bst4CI	ACNGT	5 cut(s)	381, 472, 680, 1005, 1134
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	408, 958
BstDEI	CTNAG	3 cut(s)	122, 1081, 1263
BstDSI	CCRYGG	1 cut(s)	856
BstF5I	GGATG	3 cut(s)	80, 553, 610
BstH2I	RGCGCY	1 cut(s)	906
BstHHI	GCGC	1 cut(s)	905
BstKTI	GATC	3 cut(s)	109, 209, 772
BstMAI	GTCTC	2 cut(s)	255, 1247
BstMBI	GATC	3 cut(s)	106, 206, 769
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 738, 900
BstNI	CCWGG	3 cut(s)	644, 743, 991
BstSCI	CCNGG	4 cut(s)	543, 642, 741, 989
BstSFI	CTRYAG	1 cut(s)	840
BstV1I	GCAGC	7 cut(s)	13, 130, 826, 854, 982, 989, 1061
BstV2I	GAAGAC	2 cut(s)	64, 153
BstX2I	RGATCY	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	1070
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	5 cut(s)	129, 264, 620, 642, 716
BtgI	CCRYGG	1 cut(s)	856
BtgZI	GCGATG	1 cut(s)	1254
BtsCI	GGATG	3 cut(s)	80, 553, 610
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	3 cut(s)	198, 751, 1001
Cac8I	GCNNGC	2 cut(s)	408, 958
CfoI	GCGC	1 cut(s)	905
Cfr13I	GGNCC	1 cut(s)	445
Csp6I	GTAC	2 cut(s)	377, 551
CviAII	CATG	5 cut(s)	351, 394, 857, 891, 896
CviQI	GTAC	2 cut(s)	377, 551
DdeI	CTNAG	3 cut(s)	122, 1081, 1263
DpnI	GATC	3 cut(s)	108, 208, 771
DpnII	GATC	3 cut(s)	106, 206, 769
DriI	GACNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	640
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	856
Eco147I	AGGCCT	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	445
Eco47III	AGCGCT	1 cut(s)	904
Eco57I	CTGAAG	2 cut(s)	81, 462
EcoRI	GAATTC	2 cut(s)	302, 533
EcoRII	CCWGG	3 cut(s)	642, 741, 989
EcoT14I	CCWWGG	1 cut(s)	856
ErhI	CCWWGG	1 cut(s)	856
FaeI	CATG	5 cut(s)	354, 397, 860, 894, 899
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	5 cut(s)	350, 393, 856, 890, 895
FauI	CCCGC	1 cut(s)	316
FauNDI	CATATG	1 cut(s)	801
FbaI	TGATCA	1 cut(s)	769
Fnu4HI	GCNGC	8 cut(s)	27, 119, 840, 843, 924, 978, 996, 1050
FokI	GGATG	3 cut(s)	67, 560, 617
Fsp4HI	GCNGC	8 cut(s)	27, 119, 840, 843, 924, 978, 996, 1050
FspBI	CTAG	3 cut(s)	12, 236, 1229
GlaI	GCGC	1 cut(s)	904
GluI	GCNGC	8 cut(s)	27, 119, 840, 843, 924, 978, 996, 1050
GsaI	CCCAGC	1 cut(s)	1178
GsuI	CTGGAG	2 cut(s)	848, 966
HaeII	RGCGCY	1 cut(s)	906
HaeIII	GGCC	5 cut(s)	129, 264, 620, 642, 716
HapII	CCGG	1 cut(s)	544
HhaI	GCGC	1 cut(s)	905
Hin1II	CATG	5 cut(s)	354, 397, 860, 894, 899
Hin6I	GCGC	1 cut(s)	903
HinP1I	GCGC	1 cut(s)	903
HincII	GTYRAC	2 cut(s)	676, 871
HindII	GTYRAC	2 cut(s)	676, 871
HindIII	AAGCTT	1 cut(s)	954
HinfI	GANTC	3 cut(s)	436, 830, 1184
HpaII	CCGG	1 cut(s)	544
Hpy166II	GTNNAC	5 cut(s)	391, 502, 676, 722, 871
Hpy188I	TCNGA	8 cut(s)	106, 177, 418, 481, 591, 684, 943, 1032
Hpy188III	TCNNGA	5 cut(s)	287, 577, 762, 827, 1188
Hpy8I	GTNNAC	5 cut(s)	391, 502, 676, 722, 871
HpyAV	CCTTC	2 cut(s)	586, 679
HpyCH4III	ACNGT	5 cut(s)	381, 472, 680, 1005, 1134
HpyCH4V	TGCA	7 cut(s)	98, 486, 601, 842, 977, 1027, 1049
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 738, 900
HpyF3I	CTNAG	3 cut(s)	122, 1081, 1263
Hsp92II	CATG	5 cut(s)	354, 397, 860, 894, 899
HspAI	GCGC	1 cut(s)	903
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	3 cut(s)	106, 206, 769
LmnI	GCTCC	3 cut(s)	985, 1003, 1010
Lsp1109I	GCAGC	7 cut(s)	13, 130, 826, 854, 982, 989, 1061
LweI	GCATC	1 cut(s)	1036
MaeI	CTAG	3 cut(s)	12, 236, 1229
MaeIII	GTNAC	1 cut(s)	985
MalI	GATC	3 cut(s)	108, 208, 771
MboI	GATC	3 cut(s)	106, 206, 769
MboII	GAAGA	7 cut(s)	55, 64, 101, 153, 468, 941, 1091
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	1227
MlsI	TGGCCA	1 cut(s)	642
MluNI	TGGCCA	1 cut(s)	642
MlyI	GAGTC	2 cut(s)	839, 1193
MmeI	TCCRAC	3 cut(s)	13, 396, 594
Mox20I	TGGCCA	1 cut(s)	642
MroXI	GAANNNNTTC	1 cut(s)	933
MscI	TGGCCA	1 cut(s)	642
MseI	TTAA	5 cut(s)	257, 513, 702, 1139, 1217
MslI	CAYNNNNRTG	2 cut(s)	431, 1230
Msp20I	TGGCCA	1 cut(s)	642
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	4 cut(s)	545, 644, 743, 991
MunI	CAATTG	1 cut(s)	725
Mva1269I	GAATGC	1 cut(s)	90
MvaI	CCWGG	3 cut(s)	644, 743, 991
MwoI	GCNNNNNNNGC	3 cut(s)	407, 738, 900
NciI	CCSGG	1 cut(s)	545
NcoI	CCATGG	1 cut(s)	856
NdeI	CATATG	1 cut(s)	801
NdeII	GATC	3 cut(s)	106, 206, 769
NlaIII	CATG	5 cut(s)	354, 397, 860, 894, 899
NmeAIII	GCCGAG	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	129
PctI	GAATGC	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	933
PfeI	GAWTC	1 cut(s)	436
PfoI	TCCNGGA	1 cut(s)	543
PkrI	GCNGC	8 cut(s)	28, 120, 841, 844, 925, 979, 997, 1051
PleI	GAGTC	2 cut(s)	838, 1192
PpsI	GAGTC	2 cut(s)	838, 1192
Psp6I	CCWGG	3 cut(s)	642, 741, 989
PspFI	CCCAGC	1 cut(s)	1174
PspGI	CCWGG	3 cut(s)	642, 741, 989
PspPI	GGNCC	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	844
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	2 cut(s)	378, 552
RsaNI	GTAC	2 cut(s)	377, 551
RseI	CAYNNNNRTG	2 cut(s)	431, 1230
SaqAI	TTAA	5 cut(s)	257, 513, 702, 1139, 1217
SatI	GCNGC	8 cut(s)	27, 119, 840, 843, 924, 978, 996, 1050
Sau3AI	GATC	3 cut(s)	106, 206, 769
Sau96I	GGNCC	1 cut(s)	445
ScaI	AGTACT	1 cut(s)	378
SchI	GAGTC	2 cut(s)	839, 1193
ScrFI	CCNGG	4 cut(s)	545, 644, 743, 991
SduI	GDGCHC	1 cut(s)	1227
SfaNI	GCATC	1 cut(s)	1036
SfcI	CTRYAG	1 cut(s)	840
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	2 cut(s)	431, 1230
SmlI	CTYRAG	2 cut(s)	287, 512
SmoI	CTYRAG	2 cut(s)	287, 512
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	3 cut(s)	226, 323, 924
SspMI	CTAG	3 cut(s)	12, 236, 1229
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	4 cut(s)	543, 642, 741, 989
StyI	CCWWGG	1 cut(s)	856
TaaI	ACNGT	5 cut(s)	381, 472, 680, 1005, 1134
TaqI	TCGA	1 cut(s)	1170
TatI	WGTACW	2 cut(s)	376, 550
TauI	GCSGC	1 cut(s)	926
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	5 cut(s)	257, 513, 702, 1139, 1217
Tru9I	TTAA	5 cut(s)	257, 513, 702, 1139, 1217
TscAI	CASTG	3 cut(s)	205, 758, 1008
TseI	GCWGC	7 cut(s)	26, 118, 839, 842, 977, 995, 1049
TspDTI	ATGAA	5 cut(s)	548, 799, 897, 1031, 1170
TspRI	CASTG	3 cut(s)	205, 758, 1008
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	7 cut(s)	302, 533, 583, 654, 821, 933, 1124
XmnI	GAANNNNTTC	1 cut(s)	933
XspI	CTAG	3 cut(s)	12, 236, 1229
ZrmI	AGTACT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.