Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003879

Physical Location & Seq

Genomic Coordinates Forward (+)

71443137 .. 71445043

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0592500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGACTTAGTGGAATCTATAATGTGCCAGTTTCTGAAGAGTTTGGCATATCAATGATCAAGTACGCATTTGACAGAGGAATAACATTCTTCGATACATCAGATGTTTATGGACCACATGCTAATGAAGTTTTGATCGGAAATGCATTGAAGCAGCTGCCTCGAGATAAGGTCCAGGTGGCTACAAAGTTTGGAATTGTAAAGGCTGATCCTGAGAAAGTTATAATTAATGGCACTCCTGAGTATGTCCGCTCCTGCTGCGAGGCTAGCCTGAAGCGGCTTGATGTGGACTACATTGATCTTTACTATCAGCACCGGATAGATACATTAGTCCCTATAGAGGATACCATGGAGGAACTAAAGAAGCTGGTGAAAGAGGGGAAAATAAAGTACATTGGATTATCTGAAGCTAGCCCAGACACAATAAGGAGGGAATATGCAGTTCATCCTATTGCTGCAGTCCAAATGGAGTGGTCTCTTTGGACTCGTGACATTGAGGAACAAATCATCCCACTTTGCAGACATTCAAGGAGACTGATTGCAGCTGGAGCAGGAATTGCCTTAATTGATTCAGTGGTAGAAGAGTCAAAGAACAGCAGGGATCCACCTACTGGTTTTGCTTTAATAAGACCTCCAAGACACCATGCAATTTCAAAGGGTCTGATGGGGTTTTGTGTGTTTGGAAATATTGCAATTGCAGCTCATTATGCTCAATGTGCACATGGCTTGAAGGGTGTCTTTGTAATTGATTTTGATGTTCACCACGGGAATGGGACAAATGATGCTTTCTATGAGGATCCGGATATATTCTTCTGTCACGCCCCGAATTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRO1

Protein Analysis

278

Amino Acids

31.11

Weight (kDa)

5.67

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	9 - 175	3e-47	Aldo/keto reductase family
Hist_deacetyl	PF00850	170 - 272	1.1e-30	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14020 AT5G14020 AT5G14020 AT5G14020 AT5G14020 AT5G14020 AT5G14020
fragaria_vesca	FvH4_6g54080 FvH4_6g54080 FvH4_6g54080 FvH4_6g54080 FvH4_6g54080 FvH4_6g54080
malus_domestica	MD09G1005600.v1.1 MD17G1009700.v1.1
prunus_persica	Prupe.3G311400_v2.0.a1 Prupe.3G311400_v2.0.a1 Prupe.3G311400_v2.0.a1
pyrus_communis	pycom17g00430
rosa_chinensis	RchiOBHm_Chr2g0176271
rosa_laevigata	RLG00000022396
rosa_multiflora	Rmu_sc0000405.1_g000022
rosa_roxburghii	Rroxscaffold_2G00076630
rosa_rugosa	Rorug02G0592500 Rorug02G0592600 Rorug02G0592700 Rorug02G0592800 Rorug02G0592800 Rorug02G0592800
rosa_samantha	Rh2AG670900 Rh2BG682400 Rh2CG645200 Rh2DG696000
rosa_wichuraiana	Rw2G055040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccBSI	CCGCTC	1 cut(s)	252
AccIII	TCCGGA	1 cut(s)	799
AciI	CCGC	2 cut(s)	250, 277
AclWI	GGATC	5 cut(s)	203, 596, 609, 791, 804
AcsI	RAATTY	1 cut(s)	826
AcuI	CTGAAG	3 cut(s)	57, 293, 426
AfaI	GTAC	2 cut(s)	65, 392
AfiI	CCNNNNNNNGG	2 cut(s)	340, 611
AgsI	TTSAA	5 cut(s)	151, 528, 654, 730, 833
AjnI	CCWGG	1 cut(s)	174
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
AluBI	AGCT	5 cut(s)	157, 367, 410, 545, 701
AluI	AGCT	5 cut(s)	157, 367, 410, 545, 701
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	2 cut(s)	480, 526
Alw44I	GTGCAC	1 cut(s)	717
AlwI	GGATC	5 cut(s)	203, 596, 609, 791, 804
AlwNI	CAGNNNCTG	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	162
Aor13HI	TCCGGA	1 cut(s)	799
ApaLI	GTGCAC	1 cut(s)	717
ApeKI	GCWGC	6 cut(s)	154, 157, 258, 455, 542, 698
ApoI	RAATTY	1 cut(s)	826
AseI	ATTAAT	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	113, 172
AsuHPI	GGTGA	2 cut(s)	382, 752
AsuNHI	GCTAGC	2 cut(s)	266, 410
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	2 cut(s)	113, 172
BaeGI	GKGCMC	1 cut(s)	721
BaeI	ACNNNNGTAYC	2 cut(s)	315, 348
BamHI	GGATCC	2 cut(s)	601, 796
BauI	CACGAG	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	6 cut(s)	144, 166, 245, 442, 554, 710
BccI	CCATC	1 cut(s)	658
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	337
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	480, 526
BfaI	CTAG	2 cut(s)	267, 411
BfmI	CTRYAG	2 cut(s)	336, 456
BfuI	GTATCC	1 cut(s)	337
BisI	GCNGC	7 cut(s)	155, 158, 259, 278, 456, 543, 699
BlsI	GCNGC	7 cut(s)	156, 159, 260, 279, 457, 544, 700
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	2 cut(s)	113, 172
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	113, 172
BmiI	GGNNCC	2 cut(s)	603, 798
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	772
BmtI	GCTAGC	2 cut(s)	270, 414
BpmI	CTGGAG	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	348, 763
BsaWI	WCCGGW	2 cut(s)	315, 799
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 611
Bse1I	ACTGG	2 cut(s)	29, 616
BseAI	TCCGGA	1 cut(s)	799
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	348, 763
BseGI	GGATG	2 cut(s)	445, 507
BseLI	CCNNNNNNNGG	2 cut(s)	340, 611
BseMII	CTCAG	2 cut(s)	204, 231
BseNI	ACTGG	2 cut(s)	29, 616
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	6 cut(s)	144, 166, 245, 442, 554, 710
BsiHKAI	GWGCWC	1 cut(s)	721
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	316, 800
BslFI	GGGAC	3 cut(s)	18, 317, 787
BslI	CCNNNNNNNGG	2 cut(s)	340, 611
BsmAI	GTCTC	2 cut(s)	480, 526
BsmFI	GGGAC	3 cut(s)	18, 317, 787
Bso31I	GGTCTC	1 cut(s)	480
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp13I	TCCGGA	1 cut(s)	799
Bsp143I	GATC	6 cut(s)	57, 135, 208, 298, 601, 796
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	2 cut(s)	250, 277
BspCNI	CTCAG	2 cut(s)	205, 232
BspEI	TCCGGA	1 cut(s)	799
BspLI	GGNNCC	2 cut(s)	603, 798
BspMAI	CTGCAG	1 cut(s)	460
BspOI	GCTAGC	2 cut(s)	270, 414
BspPI	GGATC	5 cut(s)	203, 596, 609, 791, 804
BspTNI	GGTCTC	1 cut(s)	480
BsrBI	CCGCTC	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	29, 616
BssECI	CCNNGG	2 cut(s)	348, 763
BssMI	GATC	6 cut(s)	57, 135, 208, 298, 601, 796
BssSI	CACGAG	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	2 cut(s)	33, 576
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	268, 412
BstDEI	CTNAG	3 cut(s)	8, 213, 240
BstDSI	CCRYGG	2 cut(s)	348, 763
BstF5I	GGATG	2 cut(s)	445, 507
BstKTI	GATC	6 cut(s)	60, 138, 211, 301, 604, 799
BstMAI	GTCTC	2 cut(s)	480, 526
BstMBI	GATC	6 cut(s)	57, 135, 208, 298, 601, 796
BstMWI	GCNNNNNNNGC	7 cut(s)	258, 267, 548, 557, 698, 707, 716
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	2 cut(s)	336, 456
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	6 cut(s)	144, 166, 245, 442, 554, 710
BstX2I	RGATCY	2 cut(s)	601, 796
BstXI	CCANNNNNNTGG	1 cut(s)	770
BstYI	RGATCY	2 cut(s)	601, 796
BsuI	GTATCC	1 cut(s)	337
BtgI	CCRYGG	2 cut(s)	348, 763
BtsCI	GGATG	2 cut(s)	445, 507
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	2 cut(s)	268, 412
CaiI	CAGNNNCTG	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	113, 172
Csp6I	GTAC	2 cut(s)	64, 391
CspCI	CAANNNNNGTGG	2 cut(s)	452, 487
CviAII	CATG	4 cut(s)	119, 349, 644, 722
CviQI	GTAC	2 cut(s)	64, 391
DdeI	CTNAG	3 cut(s)	8, 213, 240
DpnI	GATC	6 cut(s)	59, 137, 210, 300, 603, 798
DpnII	GATC	6 cut(s)	57, 135, 208, 298, 601, 796
Eam1104I	CTCTTC	2 cut(s)	33, 576
EarI	CTCTTC	2 cut(s)	33, 576
Eco130I	CCWWGG	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	480
Eco47I	GGWCC	2 cut(s)	113, 172
Eco57I	CTGAAG	3 cut(s)	57, 293, 426
Eco88I	CYCGRG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	4 cut(s)	122, 352, 647, 725
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	3 cut(s)	18, 317, 787
FatI	CATG	4 cut(s)	118, 348, 643, 721
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	7 cut(s)	155, 158, 259, 278, 456, 543, 699
FokI	GGATG	2 cut(s)	432, 494
Fsp4HI	GCNGC	7 cut(s)	155, 158, 259, 278, 456, 543, 699
FspBI	CTAG	2 cut(s)	267, 411
GluI	GCNGC	7 cut(s)	155, 158, 259, 278, 456, 543, 699
GsuI	CTGGAG	1 cut(s)	567
HapII	CCGG	2 cut(s)	316, 800
Hin1II	CATG	4 cut(s)	122, 352, 647, 725
HinfI	GANTC	4 cut(s)	15, 484, 569, 584
HpaII	CCGG	2 cut(s)	316, 800
HphI	GGTGA	2 cut(s)	382, 752
Hpy166II	GTNNAC	3 cut(s)	289, 719, 760
Hpy188I	TCNGA	5 cut(s)	37, 103, 140, 406, 663
Hpy188III	TCNNGA	5 cut(s)	164, 212, 239, 488, 800
Hpy8I	GTNNAC	3 cut(s)	289, 719, 760
HpyAV	CCTTC	1 cut(s)	724
HpyCH4V	TGCA	9 cut(s)	146, 440, 458, 519, 542, 647, 692, 698, 719
HpyF10VI	GCNNNNNNNGC	7 cut(s)	258, 267, 548, 557, 698, 707, 716
HpyF3I	CTNAG	3 cut(s)	8, 213, 240
Hsp92II	CATG	4 cut(s)	122, 352, 647, 725
Kpn2I	TCCGGA	1 cut(s)	799
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	6 cut(s)	57, 135, 208, 298, 601, 796
LmnI	GCTCC	2 cut(s)	257, 548
Lsp1109I	GCAGC	6 cut(s)	144, 166, 245, 442, 554, 710
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	2 cut(s)	267, 411
MaeIII	GTNAC	2 cut(s)	488, 815
MalI	GATC	6 cut(s)	59, 137, 210, 300, 603, 798
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	6 cut(s)	57, 135, 208, 298, 601, 796
MboII	GAAGA	4 cut(s)	50, 82, 593, 802
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	2 cut(s)	601, 796
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	8 cut(s)	195, 225, 555, 564, 648, 693, 744, 826
MlyI	GAGTC	2 cut(s)	478, 593
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	799
MseI	TTAA	3 cut(s)	228, 563, 623
MslI	CAYNNNNRTG	3 cut(s)	53, 123, 768
MspA1I	CMGCKG	2 cut(s)	157, 545
MspI	CCGG	2 cut(s)	316, 800
MspR9I	CCNGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	7 cut(s)	258, 267, 548, 557, 698, 707, 716
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	6 cut(s)	57, 135, 208, 298, 601, 796
NheI	GCTAGC	2 cut(s)	266, 410
NlaIII	CATG	4 cut(s)	122, 352, 647, 725
NlaIV	GGNNCC	2 cut(s)	603, 798
NmuCI	GTSAC	2 cut(s)	488, 815
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	15, 569
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	7 cut(s)	156, 159, 260, 279, 457, 544, 700
PleI	GAGTC	2 cut(s)	478, 592
PpsI	GAGTC	2 cut(s)	478, 592
PshBI	ATTAAT	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	603, 798
PspPI	GGNCC	2 cut(s)	113, 172
PstI	CTGCAG	1 cut(s)	460
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	601, 796
PvuII	CAGCTG	2 cut(s)	157, 545
RsaI	GTAC	2 cut(s)	65, 392
RsaNI	GTAC	2 cut(s)	64, 391
RseI	CAYNNNNRTG	3 cut(s)	53, 123, 768
SaqAI	TTAA	3 cut(s)	228, 563, 623
SatI	GCNGC	7 cut(s)	155, 158, 259, 278, 456, 543, 699
Sau3AI	GATC	6 cut(s)	57, 135, 208, 298, 601, 796
Sau96I	GGNCC	2 cut(s)	113, 172
SchI	GAGTC	2 cut(s)	478, 593
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	721
SetI	ASST	9 cut(s)	159, 174, 180, 369, 412, 547, 610, 634, 703
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	2 cut(s)	336, 456
Sfr274I	CTCGAG	1 cut(s)	162
SinI	GGWCC	2 cut(s)	113, 172
SlaI	CTCGAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	3 cut(s)	53, 123, 768
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	8 cut(s)	195, 225, 555, 564, 648, 693, 744, 826
SsiI	CCGC	2 cut(s)	250, 277
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	2 cut(s)	267, 411
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	348
TaqI	TCGA	2 cut(s)	93, 163
TasI	AATT	8 cut(s)	195, 225, 555, 564, 648, 693, 744, 826
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	2 cut(s)	15, 569
Tru1I	TTAA	3 cut(s)	228, 563, 623
Tru9I	TTAA	3 cut(s)	228, 563, 623
TscAI	CASTG	1 cut(s)	579
TseFI	GTSAC	2 cut(s)	488, 815
TseI	GCWGC	6 cut(s)	154, 157, 258, 455, 542, 698
Tsp45I	GTSAC	2 cut(s)	488, 815
TspDTI	ATGAA	2 cut(s)	141, 434
TspRI	CASTG	1 cut(s)	579
Van91I	CCANNNNNTGG	1 cut(s)	611
VneI	GTGCAC	1 cut(s)	717
VpaK11BI	GGWCC	2 cut(s)	113, 172
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	1 cut(s)	826
XceI	RCATGY	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	162
XspI	CTAG	2 cut(s)	267, 411
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.