MD17G1009700.v1.1

BRO1-like domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
602091 .. 605104
3014 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1009700.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGGGGTGCGCCTCTTCTGTTTATGCTATTCGAGGAAAGAAGAAGTTGACTGTCCCTGAAGTCGTGGTCTTTGTCCCGTCTACGCGAATCCCGGCTCAGTCTGATGTTCAAAAGCGTCTTAGAGGCCTCATTCCAAAAGATCTTGTTGACAGACTGTCGTCTCTTCGCAATCAGATTGTCTTAGTTGCAGAGGATACTGGTGGATCTGCTATATCTGAACTGCGGCGAGCATTGGAGGAGTACTTGTCTGTTTTAATTGGGCTCACCAAGAAAGAATATGGTCTGGAGAGATTGGTTGAATTCAAGTGGAAATGTTTGGAGGATGGAAAACAGGAAGCATGTGCGGCAAACTCCTGGTTTGAAGTACTGTCTGTTCTGCACCTGATGGCTATGCTTACATTGTCGGAGGCTGACACCTTGATGATCCCGCTCGACCATTCTGGTTCGACTACAAGGACAGTTTCTTCAGATTCCAAGAGAGAAGCTGTCGACTTATTGCTCAAGGCATCCGGCTACTTGGAATTCTGTGTCCGGGATGTCCTGGTTCGCATACCACCCGAAATCAAGAAAAATTTGCCCAAAATTTTGCGGGATGGTGTGTTGGAGGCCATTTCTTATCAAACTCTAGGCCAGGGAACAGAAATCCAGCTTGGCTTAGCTGTTGAATGTCAGAAGGCCACATTGTCAGTTAAAAGGAGATTGGCATGTGAACAGTTGACCTATTTTAGTCAGGCCTATCACTGCTTGTCAGGATGCGACACAAATAATGGGTGCGGGAAGAAGCATATCTGGTTCATCAAATGGAAATTTCTCGAGTCAAAGGCTGCAGCATACTACTACCACGGCCTGATCCTTGACAAGGGCAATGAACCGTCATGCCACGTTAGCGCTGTGTGCTGTTTTCTTGCAGCGGAAGAACTTGTATCAGAGAGCAAGAAGGCTTGCTTAACCTTTTGCCTTGCAGCTCCAGTTACCAGGGCTCCTCCACTCTGGGGAGCTATGAGGCATTTGCATCAGAAAATTCCTGAAGTTGCAACAAGGAAATCCCAGATGTATGGCTACCTTTTAGAACAAGAAAAGGTTCTACAAACATTGCCTGACCTACCAGAATTTCAACTGTCATTAAGACCTGATGACTATCAGCTACCTGAAATCGACCCGGCCTGGGATTCCGAAAAGTGGGAAGCTGAGGGCCAGACCTTGAAAGAGCACCTAAAAGATAGCGACGACGAGATTGAAACTCCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

417

Amino Acids

46.65

Weight (kDa)

5.95

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 2 cut(s) 80, 489
AccII CGCG 1 cut(s) 85
AciI CCGC 6 cut(s) 223, 344, 428, 589, 774, 911
AclWI GGATC 3 cut(s) 211, 418, 844
AcsI RAATTY 7 cut(s) 299, 521, 571, 582, 806, 1020, 1109
AcuI CTGAAG 3 cut(s) 78, 450, 1047
AfaI GTAC 2 cut(s) 242, 366
AfeI AGCGCT 1 cut(s) 889
AfiI CCNNNNNNNGG 4 cut(s) 859, 992, 1165, 1179
AgsI TTSAA 8 cut(s) 110, 299, 304, 362, 665, 1115, 1204, 1238
AhdI GACNNNNNGTC 1 cut(s) 154
AjnI CCWGG 5 cut(s) 353, 540, 630, 974, 1163
AjuI GAANNNNNNNTTGG 2 cut(s) 633, 665
AluBI AGCT 7 cut(s) 485, 649, 659, 965, 998, 1144, 1187
AluI AGCT 7 cut(s) 485, 649, 659, 965, 998, 1144, 1187
Alw21I GWGCWC 1 cut(s) 1212
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 3 cut(s) 211, 418, 844
Ama87I CYCGRG 1 cut(s) 812
Aor51HI AGCGCT 1 cut(s) 889
AoxI GGCC 8 cut(s) 124, 606, 628, 675, 732, 844, 1161, 1192
ApeKI GCWGC 4 cut(s) 824, 827, 908, 962
ApoI RAATTY 7 cut(s) 299, 521, 571, 582, 806, 1020, 1109
Asp700I GAANNNNTTC 1 cut(s) 1080
AspLEI GCGC 2 cut(s) 11, 890
AspS9I GGNCC 1 cut(s) 1192
AsuC2I CCSGG 3 cut(s) 92, 533, 1160
AsuHPI GGTGA 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 812
BanII GRGCYC 2 cut(s) 264, 982
Bbv12I GWGCWC 1 cut(s) 1212
BbvCI CCTCAGC 1 cut(s) 1188
BbvI GCAGC 4 cut(s) 811, 839, 920, 974
BccI CCATC 3 cut(s) 317, 379, 587
BceAI ACGGC 1 cut(s) 859
BciT130I CCWGG 5 cut(s) 355, 542, 632, 976, 1165
BciVI GTATCC 1 cut(s) 187
BcnI CCSGG 3 cut(s) 92, 533, 1160
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 825
BfoI RGCGCY 1 cut(s) 891
BfuI GTATCC 1 cut(s) 187
BglII AGATCT 1 cut(s) 139
BisI GCNGC 6 cut(s) 224, 345, 825, 828, 909, 963
BlpI GCTNAGC 1 cut(s) 655
BlsI GCNGC 6 cut(s) 225, 346, 826, 829, 910, 964
BmcAI AGTACT 2 cut(s) 242, 366
Bme1390I CCNGG 8 cut(s) 92, 355, 533, 542, 632, 976, 1160, 1165
BmeRI GACNNNNNGTC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 812
BmgT120I GGNCC 1 cut(s) 1192
BmiI GGNNCC 1 cut(s) 981
BmrFI CCNGG 8 cut(s) 92, 355, 533, 542, 632, 976, 1160, 1165
BmsI GCATC 3 cut(s) 515, 743, 1021
BoxI GACNNNNGTC 1 cut(s) 157
BpmI CTGGAG 3 cut(s) 305, 951, 1227
Bpu10I CCTNAGC 1 cut(s) 1188
Bpu1102I GCTNAGC 1 cut(s) 655
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 3 cut(s) 92, 533, 1160
BsaBI GATNNNNATC 1 cut(s) 1137
BsaJI CCNNGG 4 cut(s) 631, 841, 975, 1164
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 964, 994
Bsc4I CCNNNNNNNGG 4 cut(s) 859, 992, 1165, 1179
Bse1I ACTGG 2 cut(s) 202, 968
Bse3DI GCAATG 2 cut(s) 871, 1091
Bse8I GATNNNNATC 1 cut(s) 1137
BseBI CCWGG 5 cut(s) 355, 542, 632, 976, 1165
BseDI CCNNGG 4 cut(s) 631, 841, 975, 1164
BseGI GGATG 5 cut(s) 328, 506, 541, 598, 758
BseJI GATNNNNATC 1 cut(s) 1137
BseLI CCNNNNNNNGG 4 cut(s) 859, 992, 1165, 1179
BseMI GCAATG 2 cut(s) 871, 1091
BseMII CTCAG 2 cut(s) 110, 1179
BseNI ACTGG 2 cut(s) 202, 968
BseRI GAGGAG 2 cut(s) 251, 972
BseXI GCAGC 4 cut(s) 811, 839, 920, 974
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 85
BshFI GGCC 8 cut(s) 126, 608, 630, 677, 734, 846, 1163, 1194
BsiHKAI GWGCWC 1 cut(s) 1212
BsiHKCI CYCGRG 1 cut(s) 812
BsiSI CCGG 4 cut(s) 92, 510, 532, 1160
BslFI GGGAC 2 cut(s) 38, 59
BslI CCNNNNNNNGG 4 cut(s) 859, 992, 1165, 1179
BsmAI GTCTC 1 cut(s) 165
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 2 cut(s) 38, 59
BsnI GGCC 8 cut(s) 126, 608, 630, 677, 734, 846, 1163, 1194
BsoBI CYCGRG 1 cut(s) 812
Bsp1286I GDGCHC 3 cut(s) 264, 982, 1212
Bsp143I GATC 4 cut(s) 139, 203, 423, 849
Bsp1720I GCTNAGC 1 cut(s) 655
BspACI CCGC 6 cut(s) 223, 344, 428, 589, 774, 911
BspANI GGCC 8 cut(s) 126, 608, 630, 677, 734, 846, 1163, 1194
BspCNI CTCAG 2 cut(s) 109, 1180
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 981
BspMAI CTGCAG 1 cut(s) 829
BspPI GGATC 3 cut(s) 211, 418, 844
BsrBI CCGCTC 1 cut(s) 430
BsrDI GCAATG 2 cut(s) 871, 1091
BsrI ACTGG 2 cut(s) 202, 968
BssECI CCNNGG 4 cut(s) 631, 841, 975, 1164
BssMI GATC 4 cut(s) 139, 203, 423, 849
Bst2UI CCWGG 5 cut(s) 355, 542, 632, 976, 1165
Bst4CI ACNGT 7 cut(s) 52, 156, 369, 460, 714, 873, 1119
Bst6I CTCTTC 2 cut(s) 19, 168
BstC8I GCNNGC 2 cut(s) 228, 943
BstDEI CTNAG 5 cut(s) 96, 119, 181, 655, 1188
BstDSI CCRYGG 1 cut(s) 841
BstENI CCTNNNNNAGG 1 cut(s) 857
BstF5I GGATG 5 cut(s) 328, 506, 541, 598, 758
BstFNI CGCG 1 cut(s) 85
BstH2I RGCGCY 1 cut(s) 891
BstHHI GCGC 2 cut(s) 11, 890
BstKTI GATC 4 cut(s) 142, 206, 426, 852
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 4 cut(s) 139, 203, 423, 849
BstMWI GCNNNNNNNGC 3 cut(s) 344, 885, 894
BstNI CCWGG 5 cut(s) 355, 542, 632, 976, 1165
BstNSI RCATGY 2 cut(s) 342, 708
BstPAI GACNNNNGTC 1 cut(s) 157
BstSCI CCNGG 8 cut(s) 90, 353, 531, 540, 630, 974, 1158, 1163
BstSFI CTRYAG 1 cut(s) 825
BstUI CGCG 1 cut(s) 85
BstV1I GCAGC 4 cut(s) 811, 839, 920, 974
BstX2I RGATCY 2 cut(s) 139, 203
BstXI CCANNNNNNTGG 1 cut(s) 1055
BstYI RGATCY 2 cut(s) 139, 203
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 8 cut(s) 126, 608, 630, 677, 734, 846, 1163, 1194
BtgI CCRYGG 1 cut(s) 841
BtsCI GGATG 5 cut(s) 328, 506, 541, 598, 758
BtsI GCAGTG 1 cut(s) 739
BtsIMutI CAGTG 1 cut(s) 739
Cac8I GCNNGC 2 cut(s) 228, 943
CfoI GCGC 2 cut(s) 11, 890
Cfr13I GGNCC 1 cut(s) 1192
CseI GACGC 1 cut(s) 104
Csp6I GTAC 2 cut(s) 241, 365
CviAII CATG 3 cut(s) 339, 705, 876
CviQI GTAC 2 cut(s) 241, 365
DdeI CTNAG 5 cut(s) 96, 119, 181, 655, 1188
DpnI GATC 4 cut(s) 141, 205, 425, 851
DpnII GATC 4 cut(s) 139, 203, 423, 849
DriI GACNNNNNGTC 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 19, 168
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 2 cut(s) 19, 168
Eco147I AGGCCT 2 cut(s) 126, 734
Eco24I GRGCYC 2 cut(s) 264, 982
Eco47III AGCGCT 1 cut(s) 889
Eco57I CTGAAG 3 cut(s) 78, 450, 1047
Eco88I CYCGRG 1 cut(s) 812
EcoNI CCTNNNNNAGG 1 cut(s) 857
EcoRI GAATTC 2 cut(s) 299, 521
EcoRII CCWGG 5 cut(s) 353, 540, 630, 974, 1163
EcoT38I GRGCYC 2 cut(s) 264, 982
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 3 cut(s) 342, 708, 879
FalI AAGNNNNNCTT 2 cut(s) 929, 961
FaqI GGGAC 2 cut(s) 38, 59
FatI CATG 3 cut(s) 338, 704, 875
FauI CCCGC 3 cut(s) 435, 582, 767
FblI GTMKAC 2 cut(s) 80, 489
Fnu4HI GCNGC 6 cut(s) 224, 345, 825, 828, 909, 963
FokI GGATG 5 cut(s) 335, 493, 548, 605, 765
FriOI GRGCYC 2 cut(s) 264, 982
Fsp4HI GCNGC 6 cut(s) 224, 345, 825, 828, 909, 963
FspBI CTAG 1 cut(s) 626
GlaI GCGC 2 cut(s) 10, 889
GluI GCNGC 6 cut(s) 224, 345, 825, 828, 909, 963
GsuI CTGGAG 3 cut(s) 305, 951, 1227
HaeII RGCGCY 1 cut(s) 891
HaeIII GGCC 8 cut(s) 126, 608, 630, 677, 734, 846, 1163, 1194
HapII CCGG 4 cut(s) 92, 510, 532, 1160
HgaI GACGC 1 cut(s) 104
HhaI GCGC 2 cut(s) 11, 890
Hin1II CATG 3 cut(s) 342, 708, 879
Hin6I GCGC 2 cut(s) 9, 888
HinP1I GCGC 2 cut(s) 9, 888
HincII GTYRAC 4 cut(s) 48, 148, 490, 717
HindII GTYRAC 4 cut(s) 48, 148, 490, 717
HinfI GANTC 4 cut(s) 87, 470, 815, 1169
HpaII CCGG 4 cut(s) 92, 510, 532, 1160
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 6 cut(s) 48, 81, 148, 490, 710, 717
Hpy188I TCNGA 9 cut(s) 103, 174, 217, 406, 469, 672, 928, 1017, 1174
Hpy188III TCNNGA 6 cut(s) 284, 565, 750, 812, 1025, 1244
Hpy8I GTNNAC 6 cut(s) 48, 81, 148, 490, 710, 717
Hpy99I CGWCG 2 cut(s) 1229, 1232
HpyAV CCTTC 2 cut(s) 667, 931
HpyCH4III ACNGT 7 cut(s) 52, 156, 369, 460, 714, 873, 1119
HpyCH4IV ACGT 1 cut(s) 882
HpyCH4V TGCA 7 cut(s) 188, 379, 827, 908, 962, 1012, 1034
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 885, 894
HpyF3I CTNAG 5 cut(s) 96, 119, 181, 655, 1188
HpySE526I ACGT 1 cut(s) 882
Hsp92II CATG 3 cut(s) 342, 708, 879
HspAI GCGC 2 cut(s) 9, 888
Kzo9I GATC 4 cut(s) 139, 203, 423, 849
LmnI GCTCC 3 cut(s) 970, 985, 995
Lsp1109I GCAGC 4 cut(s) 811, 839, 920, 974
LweI GCATC 3 cut(s) 515, 743, 1021
MaeI CTAG 1 cut(s) 626
MaeII ACGT 1 cut(s) 882
MaeIII GTNAC 1 cut(s) 970
MalI GATC 4 cut(s) 141, 205, 425, 851
MbiI CCGCTC 1 cut(s) 430
MboI GATC 4 cut(s) 139, 203, 423, 849
MboII GAAGA 6 cut(s) 6, 52, 155, 456, 790, 926
MflI RGATCY 2 cut(s) 139, 203
MhlI GDGCHC 3 cut(s) 264, 982, 1212
MluCI AATT 8 cut(s) 255, 299, 521, 571, 582, 806, 1020, 1109
MlyI GAGTC 1 cut(s) 824
MmeI TCCRAC 2 cut(s) 384, 582
MroXI GAANNNNTTC 1 cut(s) 1080
MseI TTAA 4 cut(s) 254, 690, 947, 1124
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 911
MspI CCGG 4 cut(s) 92, 510, 532, 1160
MspR9I CCNGG 8 cut(s) 92, 355, 533, 542, 632, 976, 1160, 1165
MvaI CCWGG 5 cut(s) 355, 542, 632, 976, 1165
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 3 cut(s) 344, 885, 894
NciI CCSGG 3 cut(s) 92, 533, 1160
NdeII GATC 4 cut(s) 139, 203, 423, 849
NlaIII CATG 3 cut(s) 342, 708, 879
NlaIV GGNNCC 1 cut(s) 981
NspI RCATGY 2 cut(s) 342, 708
PaeR7I CTCGAG 1 cut(s) 812
PceI AGGCCT 2 cut(s) 126, 734
PdmI GAANNNNTTC 1 cut(s) 1080
PfeI GAWTC 3 cut(s) 87, 470, 1169
PfoI TCCNGGA 1 cut(s) 531
PkrI GCNGC 6 cut(s) 225, 346, 826, 829, 910, 964
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
PshAI GACNNNNGTC 1 cut(s) 157
Psp6I CCWGG 5 cut(s) 353, 540, 630, 974, 1163
PspGI CCWGG 5 cut(s) 353, 540, 630, 974, 1163
PspN4I GGNNCC 1 cut(s) 981
PspPI GGNCC 1 cut(s) 1192
PsrI GAACNNNNNNTAC 2 cut(s) 357, 389
PstI CTGCAG 1 cut(s) 829
PsuI RGATCY 2 cut(s) 139, 203
RsaI GTAC 2 cut(s) 242, 366
RsaNI GTAC 2 cut(s) 241, 365
RseI CAYNNNNRTG 1 cut(s) 419
SalI GTCGAC 1 cut(s) 488
SaqAI TTAA 4 cut(s) 254, 690, 947, 1124
SatI GCNGC 6 cut(s) 224, 345, 825, 828, 909, 963
Sau3AI GATC 4 cut(s) 139, 203, 423, 849
Sau96I GGNCC 1 cut(s) 1192
ScaI AGTACT 2 cut(s) 242, 366
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 8 cut(s) 92, 355, 533, 542, 632, 976, 1160, 1165
SduI GDGCHC 3 cut(s) 264, 982, 1212
SfaNI GCATC 3 cut(s) 515, 743, 1021
SfcI CTRYAG 1 cut(s) 825
Sfr274I CTCGAG 1 cut(s) 812
SlaI CTCGAG 1 cut(s) 812
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 500, 812
SmoI CTYRAG 2 cut(s) 500, 812
Sse9I AATT 8 cut(s) 255, 299, 521, 571, 582, 806, 1020, 1109
SseBI AGGCCT 2 cut(s) 126, 734
SsiI CCGC 6 cut(s) 223, 344, 428, 589, 774, 911
SspMI CTAG 1 cut(s) 626
StuI AGGCCT 2 cut(s) 126, 734
StyD4I CCNGG 8 cut(s) 90, 353, 531, 540, 630, 974, 1158, 1163
TaaI ACNGT 7 cut(s) 52, 156, 369, 460, 714, 873, 1119
TaiI ACGT 1 cut(s) 885
TaqI TCGA 6 cut(s) 31, 432, 446, 489, 813, 1155
TasI AATT 8 cut(s) 255, 299, 521, 571, 582, 806, 1020, 1109
TatI WGTACW 2 cut(s) 240, 364
TauI GCSGC 2 cut(s) 226, 347
TfiI GAWTC 3 cut(s) 87, 470, 1169
Tru1I TTAA 4 cut(s) 254, 690, 947, 1124
Tru9I TTAA 4 cut(s) 254, 690, 947, 1124
TscAI CASTG 1 cut(s) 746
TseI GCWGC 4 cut(s) 824, 827, 908, 962
TspDTI ATGAA 2 cut(s) 784, 882
TspRI CASTG 1 cut(s) 746
XagI CCTNNNNNAGG 1 cut(s) 857
XapI RAATTY 7 cut(s) 299, 521, 571, 582, 806, 1020, 1109
XceI RCATGY 2 cut(s) 342, 708
XhoI CTCGAG 1 cut(s) 812
XmiI GTMKAC 2 cut(s) 80, 489
XmnI GAANNNNTTC 1 cut(s) 1080
XspI CTAG 1 cut(s) 626
ZrmI AGTACT 2 cut(s) 242, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.