Prupe.3G311400_v2.0.a1

BRO1-like domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
27013969 .. 27017302
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G311400.3

Sequence Viewer

Length: 1248 bp
ATGGGCTGCGCTTCTTCTGTTTATGCTGTTGGAGGGAGGAAGAAGTTGACTGTCCCCGAAGTCGTCGTCCTCGTCCCATCAACGCGAATTCCTGCACAATCTGATCTTCAAAGGCGGCTTAGAGGCCTAATCCCAATAGATCTTGCTCACAGATTGTCTTCCCTTCGCAATCAGATTGTCTTAGTGGCAGAGGACACTGGTGGATCTGCTATTCCTGAACTGAGGAGAGCACTGGAGGAGTACTTGTCTGTTTTAATTGGGCTCACTAAGAAAGAATATGGTCTAGAGGGATCGGTTGAATTCAAGTGGAAAAGCTTAGAGGATGGCAAGCAGGAAGCCTGTGTGGCAAACTCTTGGTTTGAAGTCCTGTCTGTTGTTCACCTCATGGCTGTGCTTACATTGTCGGAGGCTGACATATTGATGATCCCACACGACCATTCTGGTTCCGGTTTAAGGACTGTCTCTTCAGATTGCAAAAGAGTTGCTGTCGACTTGCTGCTTAAGGCATCAGGCTACTTGGAATTCTGTGTCCGGGATGTACTGATTCGCATACCGCCTGAAATCAAGAAAAAGTTGCCAAACAATTTGCATGACGGTGTATTGGAGGCCATTTCCTTTCAATCTCTGGGCCAGGGAACAGAAATTCAGCTTGGTTTGGCTGTTGACTGTCAGAAGGCCACTTTATCAGTCAAAAGAAGATTGGCATGTGAGCAATTGACCTATTTTAGCCAGGCTTATCACTGCTTGTCAGGATGTGACATCAATAACGGGTGTGGGAAGAAGCATATGTGGTTCATCAAATGGAAATTTCTTGAGTCAAAGGCTGCAGCATACTACTACCATGGTCTGATCCTTGACAAGGGTAATGAGCCATCCTGCCACGTTAGCGCAGTATGTTGTTTTCTTGCCGCGGAAGAAATTCTATCAGAGAGCAAGAAAGCTTGCTTAACCTTTTGCCTTGCAGCTCCAGTTACCAGGGCTCCTCCACTCTGGGGAGCTATGAGGCATTTGCATCAGAAAATTCCTGAAGTTGCAACAAGGAAATCTCAGATGTATGGCTACCTCTTAGAGCAAGAGAAGGCTCTCCAAACATTGCCTGACCTGCCAGAATTTCAACTGTCATTAAGACCCGATGACTATCAGCTACCGGAAATGGACCCAGCTTGGGATGCCGAAAAGTGGGAAACAGAAGGCCAGACCCTGAAAGAGCATCTTAAAGACAGTGAAGATGAGACTGAAACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

416

Amino Acids

46.3

Weight (kDa)

5.9

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1110
AccI GTMKAC 1 cut(s) 489
AccII CGCG 2 cut(s) 85, 911
AciI CCGC 4 cut(s) 115, 554, 909, 911
AclWI GGATC 4 cut(s) 211, 298, 418, 844
AcsI RAATTY 8 cut(s) 87, 299, 521, 642, 806, 918, 1020, 1109
AcuI CTGAAG 2 cut(s) 450, 1047
AfaI GTAC 2 cut(s) 242, 540
AfiI CCNNNNNNNGG 5 cut(s) 453, 859, 992, 1165, 1179
AflII CTTAAG 1 cut(s) 500
AgsI TTSAA 6 cut(s) 110, 299, 304, 362, 620, 1115
AjnI CCWGG 3 cut(s) 630, 729, 974
AjuI GAANNNNNNNTTGG 2 cut(s) 633, 665
AluBI AGCT 7 cut(s) 315, 649, 941, 965, 998, 1144, 1163
AluI AGCT 7 cut(s) 315, 649, 941, 965, 998, 1144, 1163
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 2 cut(s) 466, 1226
AlwI GGATC 4 cut(s) 211, 298, 418, 844
AlwNI CAGNNNCTG 1 cut(s) 1201
AoxI GGCC 5 cut(s) 124, 606, 628, 675, 1192
ApeKI GCWGC 5 cut(s) 6, 496, 824, 827, 962
ApoI RAATTY 8 cut(s) 87, 299, 521, 642, 806, 918, 1020, 1109
ArsI GACNNNNNNTTYG 2 cut(s) 51, 83
Asp700I GAANNNNTTC 1 cut(s) 918
AspLEI GCGC 2 cut(s) 11, 890
AspS9I GGNCC 2 cut(s) 628, 1156
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 1 cut(s) 1156
BanII GRGCYC 2 cut(s) 264, 982
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 4 cut(s) 483, 811, 839, 974
BccI CCATC 3 cut(s) 85, 317, 880
BciT130I CCWGG 3 cut(s) 632, 731, 976
BcnI CCSGG 1 cut(s) 533
BcoDI GTCTC 2 cut(s) 466, 1226
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 825
BfrI CTTAAG 1 cut(s) 500
BfuAI ACCTGC 1 cut(s) 1110
BglI GCCNNNNNGGC 1 cut(s) 344
BglII AGATCT 1 cut(s) 139
BisI GCNGC 7 cut(s) 7, 116, 497, 825, 828, 909, 963
BlsI GCNGC 7 cut(s) 8, 117, 498, 826, 829, 910, 964
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 4 cut(s) 533, 632, 731, 976
Bme18I GGWCC 1 cut(s) 1156
BmgT120I GGNCC 2 cut(s) 628, 1156
BmiI GGNNCC 3 cut(s) 445, 981, 1158
BmrFI CCNGG 4 cut(s) 533, 632, 731, 976
BmsI GCATC 4 cut(s) 515, 1021, 1159, 1219
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 2 cut(s) 254, 951
BpuEI CTTGAG 1 cut(s) 833
BpuMI CCSGG 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 1137
BsaJI CCNNGG 4 cut(s) 631, 841, 909, 975
BsaWI WCCGGW 2 cut(s) 446, 1147
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 964, 994
Bsc4I CCNNNNNNNGG 5 cut(s) 453, 859, 992, 1165, 1179
Bse1I ACTGG 3 cut(s) 202, 237, 968
Bse3DI GCAATG 1 cut(s) 1091
Bse8I GATNNNNATC 1 cut(s) 1137
BseBI CCWGG 3 cut(s) 632, 731, 976
BseDI CCNNGG 4 cut(s) 631, 841, 909, 975
BseGI GGATG 5 cut(s) 328, 541, 758, 872, 1174
BseJI GATNNNNATC 1 cut(s) 1137
BseLI CCNNNNNNNGG 5 cut(s) 453, 859, 992, 1165, 1179
BseMI GCAATG 1 cut(s) 1091
BseMII CTCAG 3 cut(s) 212, 1061, 1233
BseNI ACTGG 3 cut(s) 202, 237, 968
BseRI GAGGAG 3 cut(s) 238, 251, 972
BseXI GCAGC 4 cut(s) 483, 811, 839, 974
BseYI CCCAGC 1 cut(s) 1159
BsgI GTGCAG 1 cut(s) 78
Bsh1236I CGCG 2 cut(s) 85, 911
BshFI GGCC 5 cut(s) 126, 608, 630, 677, 1194
BsiHKAI GWGCWC 1 cut(s) 232
BsiSI CCGG 3 cut(s) 447, 532, 1148
BslFI GGGAC 2 cut(s) 38, 59
BslI CCNNNNNNNGG 5 cut(s) 453, 859, 992, 1165, 1179
BsmAI GTCTC 2 cut(s) 466, 1226
BsmFI GGGAC 2 cut(s) 38, 59
BsnI GGCC 5 cut(s) 126, 608, 630, 677, 1194
Bsp1286I GDGCHC 3 cut(s) 232, 264, 982
Bsp143I GATC 6 cut(s) 103, 139, 203, 290, 423, 849
Bsp19I CCATGG 1 cut(s) 841
BspACI CCGC 4 cut(s) 115, 554, 909, 911
BspANI GGCC 5 cut(s) 126, 608, 630, 677, 1194
BspCNI CTCAG 3 cut(s) 213, 1060, 1234
BspFNI CGCG 2 cut(s) 85, 911
BspLI GGNNCC 3 cut(s) 445, 981, 1158
BspMAI CTGCAG 1 cut(s) 829
BspMI ACCTGC 1 cut(s) 1110
BspPI GGATC 4 cut(s) 211, 298, 418, 844
BspTI CTTAAG 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 1091
BsrI ACTGG 3 cut(s) 202, 237, 968
BssECI CCNNGG 4 cut(s) 631, 841, 909, 975
BssMI GATC 6 cut(s) 103, 139, 203, 290, 423, 849
BssT1I CCWWGG 1 cut(s) 841
Bst2UI CCWGG 3 cut(s) 632, 731, 976
Bst4CI ACNGT 6 cut(s) 52, 460, 596, 668, 1119, 1223
Bst6I CTCTTC 1 cut(s) 469
BstAFI CTTAAG 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 329, 943
BstDEI CTNAG 8 cut(s) 119, 181, 221, 267, 316, 1047, 1066, 1242
BstDSI CCRYGG 2 cut(s) 841, 909
BstENI CCTNNNNNAGG 1 cut(s) 857
BstF5I GGATG 5 cut(s) 328, 541, 758, 872, 1174
BstFNI CGCG 2 cut(s) 85, 911
BstHHI GCGC 2 cut(s) 11, 890
BstKTI GATC 6 cut(s) 106, 142, 206, 293, 426, 852
BstMAI GTCTC 2 cut(s) 466, 1226
BstMBI GATC 6 cut(s) 103, 139, 203, 290, 423, 849
BstMWI GCNNNNNNNGC 4 cut(s) 344, 885, 1102, 1169
BstNI CCWGG 3 cut(s) 632, 731, 976
BstNSI RCATGY 1 cut(s) 708
BstSCI CCNGG 4 cut(s) 531, 630, 729, 974
BstSFI CTRYAG 1 cut(s) 825
BstUI CGCG 2 cut(s) 85, 911
BstV1I GCAGC 4 cut(s) 483, 811, 839, 974
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 2 cut(s) 139, 203
BstYI RGATCY 2 cut(s) 139, 203
BsuRI GGCC 5 cut(s) 126, 608, 630, 677, 1194
BtgI CCRYGG 2 cut(s) 841, 909
BtsCI GGATG 5 cut(s) 328, 541, 758, 872, 1174
BtsI GCAGTG 1 cut(s) 739
BtsIMutI CAGTG 4 cut(s) 195, 230, 739, 1228
BveI ACCTGC 1 cut(s) 1110
Cac8I GCNNGC 2 cut(s) 329, 943
CaiI CAGNNNCTG 1 cut(s) 1201
CfoI GCGC 2 cut(s) 11, 890
Cfr13I GGNCC 2 cut(s) 628, 1156
Cfr42I CCGCGG 1 cut(s) 912
Csp6I GTAC 2 cut(s) 241, 539
CviAII CATG 4 cut(s) 385, 590, 705, 842
CviQI GTAC 2 cut(s) 241, 539
DdeI CTNAG 8 cut(s) 119, 181, 221, 267, 316, 1047, 1066, 1242
DpnI GATC 6 cut(s) 105, 141, 205, 292, 425, 851
DpnII GATC 6 cut(s) 103, 139, 203, 290, 423, 849
Eam1104I CTCTTC 1 cut(s) 469
EarI CTCTTC 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 841
Eco147I AGGCCT 1 cut(s) 126
Eco24I GRGCYC 2 cut(s) 264, 982
Eco47I GGWCC 1 cut(s) 1156
Eco57I CTGAAG 2 cut(s) 450, 1047
EcoNI CCTNNNNNAGG 1 cut(s) 857
EcoRI GAATTC 3 cut(s) 87, 299, 521
EcoRII CCWGG 3 cut(s) 630, 729, 974
EcoT14I CCWWGG 1 cut(s) 841
EcoT38I GRGCYC 2 cut(s) 264, 982
ErhI CCWWGG 1 cut(s) 841
FaeI CATG 4 cut(s) 388, 593, 708, 845
FalI AAGNNNNNCTT 2 cut(s) 1197, 1229
FaqI GGGAC 2 cut(s) 38, 59
FatI CATG 4 cut(s) 384, 589, 704, 841
FauNDI CATATG 1 cut(s) 786
FblI GTMKAC 1 cut(s) 489
Fnu4HI GCNGC 7 cut(s) 7, 116, 497, 825, 828, 909, 963
FokI GGATG 5 cut(s) 335, 548, 765, 859, 1181
FriOI GRGCYC 2 cut(s) 264, 982
Fsp4HI GCNGC 7 cut(s) 7, 116, 497, 825, 828, 909, 963
FspBI CTAG 1 cut(s) 284
GlaI GCGC 2 cut(s) 10, 889
GluI GCNGC 7 cut(s) 7, 116, 497, 825, 828, 909, 963
GsaI CCCAGC 1 cut(s) 1163
GsuI CTGGAG 2 cut(s) 254, 951
HaeIII GGCC 5 cut(s) 126, 608, 630, 677, 1194
HapII CCGG 3 cut(s) 447, 532, 1148
HhaI GCGC 2 cut(s) 11, 890
Hin1II CATG 4 cut(s) 388, 593, 708, 845
Hin6I GCGC 2 cut(s) 9, 888
HinP1I GCGC 2 cut(s) 9, 888
HincII GTYRAC 3 cut(s) 48, 490, 664
HindII GTYRAC 3 cut(s) 48, 490, 664
HindIII AAGCTT 2 cut(s) 313, 939
HinfI GANTC 2 cut(s) 544, 815
HpaII CCGG 3 cut(s) 447, 532, 1148
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 4 cut(s) 48, 379, 490, 664
Hpy188I TCNGA 9 cut(s) 103, 174, 406, 469, 672, 849, 928, 1017, 1050
Hpy188III TCNNGA 6 cut(s) 215, 284, 565, 750, 812, 1025
Hpy8I GTNNAC 4 cut(s) 48, 379, 490, 664
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 4 cut(s) 173, 667, 1072, 1184
HpyCH4III ACNGT 6 cut(s) 52, 460, 596, 668, 1119, 1223
HpyCH4IV ACGT 1 cut(s) 882
HpyCH4V TGCA 7 cut(s) 95, 474, 589, 827, 962, 1012, 1034
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 885, 1102, 1169
HpyF3I CTNAG 8 cut(s) 119, 181, 221, 267, 316, 1047, 1066, 1242
HpySE526I ACGT 1 cut(s) 882
Hsp92II CATG 4 cut(s) 388, 593, 708, 845
HspAI GCGC 2 cut(s) 9, 888
KspI CCGCGG 1 cut(s) 912
Kzo9I GATC 6 cut(s) 103, 139, 203, 290, 423, 849
LmnI GCTCC 3 cut(s) 970, 985, 995
Lsp1109I GCAGC 4 cut(s) 483, 811, 839, 974
LweI GCATC 4 cut(s) 515, 1021, 1159, 1219
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 882
MaeIII GTNAC 2 cut(s) 755, 970
MalI GATC 6 cut(s) 105, 141, 205, 292, 425, 851
MboI GATC 6 cut(s) 103, 139, 203, 290, 423, 849
MboII GAAGA 9 cut(s) 6, 52, 98, 150, 456, 708, 790, 926, 1238
MfeI CAATTG 1 cut(s) 713
MflI RGATCY 2 cut(s) 139, 203
MhlI GDGCHC 3 cut(s) 232, 264, 982
MlyI GAGTC 1 cut(s) 824
MmeI TCCRAC 2 cut(s) 10, 384
MroXI GAANNNNTTC 1 cut(s) 918
MseI TTAA 6 cut(s) 254, 452, 501, 947, 1124, 1215
MslI CAYNNNNRTG 3 cut(s) 389, 419, 594
MspA1I CMGCKG 1 cut(s) 911
MspCI CTTAAG 1 cut(s) 500
MspI CCGG 3 cut(s) 447, 532, 1148
MspR9I CCNGG 4 cut(s) 533, 632, 731, 976
MunI CAATTG 1 cut(s) 713
MvaI CCWGG 3 cut(s) 632, 731, 976
MvnI CGCG 2 cut(s) 85, 911
MwoI GCNNNNNNNGC 4 cut(s) 344, 885, 1102, 1169
NciI CCSGG 1 cut(s) 533
NcoI CCATGG 1 cut(s) 841
NdeI CATATG 1 cut(s) 786
NdeII GATC 6 cut(s) 103, 139, 203, 290, 423, 849
NlaIII CATG 4 cut(s) 388, 593, 708, 845
NlaIV GGNNCC 3 cut(s) 445, 981, 1158
NmuCI GTSAC 1 cut(s) 755
NspI RCATGY 1 cut(s) 708
PceI AGGCCT 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 918
PfeI GAWTC 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 531
PkrI GCNGC 7 cut(s) 8, 117, 498, 826, 829, 910, 964
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
Psp6I CCWGG 3 cut(s) 630, 729, 974
PspFI CCCAGC 1 cut(s) 1159
PspGI CCWGG 3 cut(s) 630, 729, 974
PspN4I GGNNCC 3 cut(s) 445, 981, 1158
PspPI GGNCC 2 cut(s) 628, 1156
PstI CTGCAG 1 cut(s) 829
PstNI CAGNNNCTG 1 cut(s) 1201
PsuI RGATCY 2 cut(s) 139, 203
RsaI GTAC 2 cut(s) 242, 540
RsaNI GTAC 2 cut(s) 241, 539
RseI CAYNNNNRTG 3 cut(s) 389, 419, 594
SacII CCGCGG 1 cut(s) 912
SalI GTCGAC 1 cut(s) 488
SaqAI TTAA 6 cut(s) 254, 452, 501, 947, 1124, 1215
SatI GCNGC 7 cut(s) 7, 116, 497, 825, 828, 909, 963
Sau3AI GATC 6 cut(s) 103, 139, 203, 290, 423, 849
Sau96I GGNCC 2 cut(s) 628, 1156
ScaI AGTACT 1 cut(s) 242
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 4 cut(s) 533, 632, 731, 976
SduI GDGCHC 3 cut(s) 232, 264, 982
SfaNI GCATC 4 cut(s) 515, 1021, 1159, 1219
SfcI CTRYAG 1 cut(s) 825
Sfr303I CCGCGG 1 cut(s) 912
SgrBI CCGCGG 1 cut(s) 912
SinI GGWCC 1 cut(s) 1156
SmiMI CAYNNNNRTG 3 cut(s) 389, 419, 594
SmlI CTYRAG 2 cut(s) 500, 812
SmoI CTYRAG 2 cut(s) 500, 812
SseBI AGGCCT 1 cut(s) 126
SsiI CCGC 4 cut(s) 115, 554, 909, 911
SspMI CTAG 1 cut(s) 284
StuI AGGCCT 1 cut(s) 126
StyD4I CCNGG 4 cut(s) 531, 630, 729, 974
StyI CCWWGG 1 cut(s) 841
TaaI ACNGT 6 cut(s) 52, 460, 596, 668, 1119, 1223
TaiI ACGT 1 cut(s) 885
TaqI TCGA 1 cut(s) 489
TatI WGTACW 2 cut(s) 240, 538
TauI GCSGC 2 cut(s) 118, 911
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 6 cut(s) 254, 452, 501, 947, 1124, 1215
Tru9I TTAA 6 cut(s) 254, 452, 501, 947, 1124, 1215
TscAI CASTG 4 cut(s) 202, 237, 746, 1228
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 5 cut(s) 6, 496, 824, 827, 962
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 1 cut(s) 784
TspRI CASTG 4 cut(s) 202, 237, 746, 1228
Vha464I CTTAAG 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 1156
XagI CCTNNNNNAGG 1 cut(s) 857
XapI RAATTY 8 cut(s) 87, 299, 521, 642, 806, 918, 1020, 1109
XbaI TCTAGA 1 cut(s) 283
XceI RCATGY 1 cut(s) 708
XmiI GTMKAC 1 cut(s) 489
XmnI GAANNNNTTC 1 cut(s) 918
XspI CTAG 1 cut(s) 284
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.