Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008783

Physical Location & Seq

Genomic Coordinates Reverse (-)

1178979 .. 1182601

Gene Structure 3623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1019500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2172 bp

ATGCAAGCTTTAGTCACTTGGGAAGTACCCCAGGTTGGATTTGAACTTGGTTCTTCTTGTAAATTTAGAACTAGAAGTAGGAGGAAAAAGATTGAAGTTGTGCGTTTTCCTGTTTGTAATGGTGGAAATGGTGACGTTTTACTTGGGAGTGAGGGTTTCAATGGAAGCAGAAAATTTGGTTTCGCATGTGGGTGCTTCTCTGGGCACTCTAGACTTAAACTTGCTCGGTTTTGTGAGCCGAAGAAGGGTTCATTTGGCGGTTCGTTTGTGGTAGCATGGGCATTGGAGAAGCAAGCAATTGGGAATGTGGTTCTTGTGGAGGAAGCGAATCCGGAAAATAGGTTGTCGGGTGAATGCGAGGGTGAGGGTGTTGTTGCTCATCGAAATGTGGATGGAAGGAAGGGCCGTGATGGTAATGATGATGATGAAATAGGGATAGGAGGTCAAGGAGAGAATTGGGAACAGAGAAATGAAAAGATTGACGTGCGTGCGCTGGCGCTAAGCTTACAGTTTGCGAAAACAGCTGACGATGTTGAAGAGGTTCTGAAGGACAAGGGTGATTTGCCCCTTCAAGTATTCTCATCCATTATCAGGGGTTTCGGAAGAGACAGATTGATGGATTCCGCTTTTGCTATTGTCGAGTGGCTTAAGAGGAAGAAGGAAGAAACTAATGGTTTCGTTACCCCAAACTTATTCATATATAACAGTCTTTTGGGTGCAGTGAAGCAATCTGGACAATTCGGACAAATTGACAAGGTATTGAGCGATATGACTAGGGAAGGGGTGGTACCGAATGTTGTAACTTACAACACTAAAATGGCGATTTACATTGAACGGGGACAAAGTATGGAGGCCCTTCATGTCCTTGAGGAGATTCAAGAGAAGGGCCTGATTCCATCTTCAGTATCGTACTCCACAGCATTGTTGGCTTATCAACGAATGCAAGATGGGAATGGAGCTTTAAAGTTCTTTGTTGAGTTTAGAGAAAATTATCGTAAAGGTCATATAGGTAAAGATGCTGATGTAGACTGGGAAGAGGAGTTTGTGAAGCTTGAGAACTTTACAAAACGCGTTTGCTACCAAGTGATGCGAAGGTGGCTTGTGAGGGATGATAACTTAACCACCAATGTGCTCAAACTACTAACAGAGATGGATATTGCTGGGGTTCCACTTGGTAGGGCAGAGCACGAGCGCCTTTTGTGGGCTTGTACCCGCGAAGAACATTATATTGTAGCAAAAGATTTGTATAGTAGGATAAGAGAAAAGCATTCTGACATAAGTTTAGCCGTGTGTAACCATACGATTTGGTTGATGGGGAAGGCTAAGAAATGGTGGGCAGCTTTGGAGATTTATGAGGATATGTTGGACAAGGGGCCGCAGCCAAATAACATGTCATATGAATTGATTGTATCTCACTTTAATGTTCTGCTAAGTGCAGCTAGAAAAAGAGCAATTTGGAAATGGGGTGTTAGGTTGCTCAACAAGATGGAAGAGAAGGGGCTTAAACCAAGAAGTAAGGAATGGAATGCGGTTCTTGTTGCCTGTTCCAAGGCTGCTGAAACTTCTGCTGCTGTCAAAATTTTTAAGAGAATGGTGGAGCAAGGTCAGAAACCCACAATCCTTTCTTACGGGGCATTGCTTAGTGCCCTCGAGAAGGGTAAGCGCTATGATGAGGCCCGTCAGGTGTGGGAACATATGCTTAAGGTTGGTCTGAAGCCAAACTTGTATGCCTACACAACTATGGCTTCGATTTTCAGTGGACATGGAAAACCTAACATGGTAGATGCCATCATAGATGACATGGTTTCAGCAGGCATTGAGCCAACTGTTGTCACATACAATGCCATTATCAGTGGGTTTGCAAGAAATGGTTTTAGCAGTGCTGCATATGATTGGTTTGACCGCATGAAAGCTCAGAACATCCCTCCAAACCATGTCACATACGAAATGATGATTGAGGCTCTCGCAAAGGAAGGGAAGCCAAGGCTTGCATATGAGCTATATTTGAGCGCTCGAACTCAACGCCTTGCCCTCTCTTCAAAAGCTTATGACACAGTCGTTCAGTCCTCACTGGAATCCGGAGCTAACATTGATGTAAGACTTTTAGGGGAACGCCCACCAGAGAGAAAGGTGAACGGGCAAGGTAGGAACACTTCCAGCCAAGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

724

Amino Acids

81.3

Weight (kDa)

8.72

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	229 - 271	1.4e-08	PPR repeat family
PPR_3	PF13812	252 - 311	5.9e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	264 - 308	1.5e-08	PPR repeat family
PPR_long	PF17177	398 - 549	3.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	491 - 550	7.1e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	511 - 682	1.3e-14	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	538 - 582	1e-07	PPR repeat family
PPR_2	PF13041	585 - 622	2.9e-06	PPR repeat family
PPR_3	PF13812	597 - 655	1.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	605 - 637	1.3e-07	PPR repeat
PPR_2	PF13041	608 - 657	1.5e-14	PPR repeat family
PPR	PF01535	611 - 640	9.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46610 AT3G46610
fragaria_vesca	FvH4_7g06820 FvH4_7g06820 FvH4_7g06820
malus_domestica	MD09G1019500.v1.1 MD17G1020100.v1.1
prunus_persica	Prupe.2G095300_v2.0.a1 Prupe.2G095300_v2.0.a1
pyrus_communis	pycom111g01620
rosa_chinensis	RchiOBHm_Chr1g0336521
rosa_laevigata	RLG00000029357
rosa_multiflora	Rmu_sc0001981.1_g000003 Rmu_sc0005044.1_g000026 Rmu_sc0009324.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315530
rosa_rugosa	Rorug01G0125900
rosa_samantha	Rh1AG147000 Rh1BG115100 Rh1CG138300 Rh1DG153700
rosa_wichuraiana	Rw1G009520 Rw1G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	787
AccB1I	GGYRCC	1 cut(s)	787
AccI	GTMKAC	1 cut(s)	1026
AccII	CGCG	2 cut(s)	1071, 1215
AccIII	TCCGGA	2 cut(s)	331, 2078
AciI	CCGC	6 cut(s)	258, 624, 1213, 1376, 1529, 1903
AcsI	RAATTY	3 cut(s)	62, 173, 1578
AcuI	CTGAAG	3 cut(s)	566, 885, 1733
AfaI	GTAC	4 cut(s)	27, 789, 911, 1210
AfeI	AGCGCT	2 cut(s)	1664, 2011
AfiI	CCNNNNNNNGG	5 cut(s)	35, 245, 591, 1201, 1654
AflII	CTTAAG	2 cut(s)	647, 1700
AflIII	ACRYGT	2 cut(s)	1069, 1389
AgsI	TTSAA	8 cut(s)	44, 95, 160, 536, 572, 833, 878, 2040
AjiI	CACGTC	1 cut(s)	484
AjnI	CCWGG	1 cut(s)	30
AleI	CACNNNNGTG	1 cut(s)	1127
Alw21I	GWGCWC	2 cut(s)	1134, 1188
Alw26I	GTCTC	1 cut(s)	600
Ama87I	CYCGRG	1 cut(s)	1649
Aor13HI	TCCGGA	2 cut(s)	331, 2078
Aor51HI	AGCGCT	2 cut(s)	1664, 2011
AoxI	GGCC	5 cut(s)	403, 852, 886, 1373, 1674
ApeKI	GCWGC	6 cut(s)	1337, 1378, 1436, 1553, 1568, 1883
ApoI	RAATTY	3 cut(s)	62, 173, 1578
ArsI	GACNNNNNNTTYG	2 cut(s)	1376, 1408
Asp700I	GAANNNNTTC	1 cut(s)	540
Asp718I	GGTACC	1 cut(s)	787
AspLEI	GCGC	5 cut(s)	493, 499, 1194, 1665, 2012
AspS9I	GGNCC	5 cut(s)	403, 853, 886, 1373, 1675
AsuHPI	GGTGA	5 cut(s)	143, 362, 374, 569, 2143
AvaI	CYCGRG	1 cut(s)	1649
BaeGI	GKGCMC	2 cut(s)	207, 1648
BanI	GGYRCC	1 cut(s)	787
BarI	GAAGNNNNNNTAC	4 cut(s)	771, 803, 2137, 2169
BauI	CACGAG	1 cut(s)	1187
Bbv12I	GWGCWC	2 cut(s)	1134, 1188
BbvI	GCAGC	6 cut(s)	1349, 1390, 1448, 1540, 1555, 1870
BccI	CCATC	9 cut(s)	386, 404, 610, 904, 941, 1144, 1306, 1480, 1796
BceAI	ACGGC	2 cut(s)	390, 1271
BciT130I	CCWGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	4 cut(s)	72, 210, 774, 1440
BfoI	RGCGCY	4 cut(s)	500, 1195, 1666, 2013
BfrI	CTTAAG	2 cut(s)	647, 1700
BisI	GCNGC	7 cut(s)	1338, 1376, 1379, 1437, 1554, 1569, 1884
BlpI	GCTNAGC	1 cut(s)	500
BlsI	GCNGC	7 cut(s)	1339, 1377, 1380, 1438, 1555, 1570, 1885
Bme1390I	CCNGG	1 cut(s)	32
BmeT110I	CYCGRG	1 cut(s)	1649
BmgBI	CACGTC	1 cut(s)	484
BmgT120I	GGNCC	5 cut(s)	403, 853, 886, 1373, 1675
BmiI	GGNNCC	3 cut(s)	789, 1167, 1374
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	1039
BmsI	GCATC	3 cut(s)	1006, 1077, 1774
BmuI	ACTGGG	1 cut(s)	1039
Bpu1102I	GCTNAGC	1 cut(s)	500
BpuEI	CTTGAG	2 cut(s)	887, 1073
BsaJI	CCNNGG	3 cut(s)	30, 1548, 1982
BsaWI	WCCGGW	2 cut(s)	331, 2078
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	5 cut(s)	35, 245, 591, 1201, 1654
Bse1I	ACTGG	2 cut(s)	1034, 2076
Bse3DI	GCAATG	1 cut(s)	1634
BseAI	TCCGGA	2 cut(s)	331, 2078
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	30, 1548, 1982
BseGI	GGATG	4 cut(s)	397, 581, 1114, 1920
BseLI	CCNNNNNNNGG	5 cut(s)	35, 245, 591, 1201, 1654
BseMI	GCAATG	1 cut(s)	1634
BseMII	CTCAG	1 cut(s)	1928
BseNI	ACTGG	2 cut(s)	1034, 2076
BseRI	GAGGAG	2 cut(s)	884, 1052
BseSI	GKGCMC	2 cut(s)	207, 1648
BseXI	GCAGC	6 cut(s)	1349, 1390, 1448, 1540, 1555, 1870
BseYI	CCCAGC	1 cut(s)	1160
BsgI	GTGCAG	2 cut(s)	738, 1455
Bsh1236I	CGCG	2 cut(s)	1071, 1215
BshFI	GGCC	5 cut(s)	405, 854, 888, 1375, 1676
BshNI	GGYRCC	1 cut(s)	787
BsiHKAI	GWGCWC	2 cut(s)	1134, 1188
BsiHKCI	CYCGRG	1 cut(s)	1649
BsiSI	CCGG	2 cut(s)	332, 2079
BslFI	GGGAC	1 cut(s)	852
BslI	CCNNNNNNNGG	5 cut(s)	35, 245, 591, 1201, 1654
BsmAI	GTCTC	1 cut(s)	600
BsmFI	GGGAC	1 cut(s)	852
BsmI	GAATGC	4 cut(s)	359, 945, 1267, 1531
BsnI	GGCC	5 cut(s)	405, 854, 888, 1375, 1676
BsoBI	CYCGRG	1 cut(s)	1649
Bsp1286I	GDGCHC	4 cut(s)	207, 1134, 1188, 1648
Bsp13I	TCCGGA	2 cut(s)	331, 2078
Bsp1720I	GCTNAGC	1 cut(s)	500
BspACI	CCGC	6 cut(s)	258, 624, 1213, 1376, 1529, 1903
BspANI	GGCC	5 cut(s)	405, 854, 888, 1375, 1676
BspCNI	CTCAG	1 cut(s)	1927
BspEI	TCCGGA	2 cut(s)	331, 2078
BspFNI	CGCG	2 cut(s)	1071, 1215
BspLI	GGNNCC	3 cut(s)	789, 1167, 1374
BspT107I	GGYRCC	1 cut(s)	787
BspTI	CTTAAG	2 cut(s)	647, 1700
BsrDI	GCAATG	1 cut(s)	1634
BsrI	ACTGG	2 cut(s)	1034, 2076
BssECI	CCNNGG	3 cut(s)	30, 1548, 1982
BssSI	CACGAG	1 cut(s)	1187
BssT1I	CCWWGG	2 cut(s)	1548, 1982
Bst2BI	CACGAG	1 cut(s)	1187
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	4 cut(s)	510, 707, 1828, 2056
Bst6I	CTCTTC	5 cut(s)	531, 598, 1029, 1485, 2041
BstAFI	CTTAAG	2 cut(s)	647, 1700
BstC8I	GCNNGC	6 cut(s)	6, 294, 489, 495, 1813, 1989
BstDEI	CTNAG	5 cut(s)	500, 1323, 1430, 1640, 1914
BstENI	CCTNNNNNAGG	1 cut(s)	1652
BstF5I	GGATG	4 cut(s)	397, 581, 1114, 1920
BstFNI	CGCG	2 cut(s)	1071, 1215
BstH2I	RGCGCY	4 cut(s)	500, 1195, 1666, 2013
BstHHI	GCGC	5 cut(s)	493, 499, 1194, 1665, 2012
BstMAI	GTCTC	1 cut(s)	600
BstMWI	GCNNNNNNNGC	3 cut(s)	521, 926, 1096
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	2 cut(s)	189, 1393
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	2 cut(s)	207, 1648
BstUI	CGCG	2 cut(s)	1071, 1215
BstV1I	GCAGC	6 cut(s)	1349, 1390, 1448, 1540, 1555, 1870
BsuRI	GGCC	5 cut(s)	405, 854, 888, 1375, 1676
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	4 cut(s)	397, 581, 1114, 1920
BtsI	GCAGTG	2 cut(s)	726, 1885
BtsIMutI	CAGTG	5 cut(s)	726, 1762, 1858, 1885, 2069
Cac8I	GCNNGC	6 cut(s)	6, 294, 489, 495, 1813, 1989
CfoI	GCGC	5 cut(s)	493, 499, 1194, 1665, 2012
Cfr13I	GGNCC	5 cut(s)	403, 853, 886, 1373, 1675
Csp6I	GTAC	4 cut(s)	26, 788, 910, 1209
CviAII	CATG	9 cut(s)	186, 276, 860, 1390, 1763, 1777, 1801, 1906, 1934
CviQI	GTAC	4 cut(s)	26, 788, 910, 1209
DdeI	CTNAG	5 cut(s)	500, 1323, 1430, 1640, 1914
DraI	TTTAAA	1 cut(s)	963
Eam1104I	CTCTTC	5 cut(s)	531, 598, 1029, 1485, 2041
EarI	CTCTTC	5 cut(s)	531, 598, 1029, 1485, 2041
Eco130I	CCWWGG	2 cut(s)	1548, 1982
Eco47III	AGCGCT	2 cut(s)	1664, 2011
Eco57I	CTGAAG	3 cut(s)	566, 885, 1733
Eco88I	CYCGRG	1 cut(s)	1649
EcoNI	CCTNNNNNAGG	1 cut(s)	1652
EcoO109I	RGGNCCY	2 cut(s)	853, 886
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	1548, 1982
ErhI	CCWWGG	2 cut(s)	1548, 1982
FaeI	CATG	9 cut(s)	189, 279, 863, 1393, 1766, 1780, 1804, 1909, 1937
FalI	AAGNNNNNCTT	2 cut(s)	1706, 1738
FaqI	GGGAC	1 cut(s)	852
FatI	CATG	9 cut(s)	185, 275, 859, 1389, 1762, 1776, 1800, 1905, 1933
FauI	CCCGC	1 cut(s)	1220
FauNDI	CATATG	4 cut(s)	1396, 1695, 1888, 1993
FblI	GTMKAC	1 cut(s)	1026
Fnu4HI	GCNGC	7 cut(s)	1338, 1376, 1379, 1437, 1554, 1569, 1884
FokI	GGATG	4 cut(s)	404, 568, 1121, 1907
Fsp4HI	GCNGC	7 cut(s)	1338, 1376, 1379, 1437, 1554, 1569, 1884
FspBI	CTAG	4 cut(s)	72, 210, 774, 1440
GlaI	GCGC	5 cut(s)	492, 498, 1193, 1664, 2011
GluI	GCNGC	7 cut(s)	1338, 1376, 1379, 1437, 1554, 1569, 1884
GsaI	CCCAGC	1 cut(s)	1164
HaeII	RGCGCY	4 cut(s)	500, 1195, 1666, 2013
HaeIII	GGCC	5 cut(s)	405, 854, 888, 1375, 1676
HapII	CCGG	2 cut(s)	332, 2079
HhaI	GCGC	5 cut(s)	493, 499, 1194, 1665, 2012
Hin1II	CATG	9 cut(s)	189, 279, 863, 1393, 1766, 1780, 1804, 1909, 1937
Hin6I	GCGC	5 cut(s)	491, 497, 1192, 1663, 2010
HinP1I	GCGC	5 cut(s)	491, 497, 1192, 1663, 2010
HindIII	AAGCTT	4 cut(s)	6, 502, 1049, 2043
HinfI	GANTC	5 cut(s)	328, 620, 874, 892, 2075
HpaII	CCGG	2 cut(s)	332, 2079
HphI	GGTGA	5 cut(s)	143, 362, 374, 569, 2143
Hpy166II	GTNNAC	3 cut(s)	1027, 1760, 2134
Hpy188I	TCNGA	7 cut(s)	546, 602, 743, 1273, 1608, 1713, 1917
Hpy188III	TCNNGA	6 cut(s)	210, 332, 732, 878, 1651, 2079
Hpy8I	GTNNAC	3 cut(s)	1027, 1760, 2134
HpyCH4III	ACNGT	4 cut(s)	510, 707, 1828, 2056
HpyCH4IV	ACGT	2 cut(s)	135, 483
HpyCH4V	TGCA	7 cut(s)	4, 719, 943, 1436, 1862, 1886, 1991
HpyF10VI	GCNNNNNNNGC	3 cut(s)	521, 926, 1096
HpyF3I	CTNAG	5 cut(s)	500, 1323, 1430, 1640, 1914
HpySE526I	ACGT	2 cut(s)	135, 483
Hsp92II	CATG	9 cut(s)	189, 279, 863, 1393, 1766, 1780, 1804, 1909, 1937
HspAI	GCGC	5 cut(s)	491, 497, 1192, 1663, 2010
Kpn2I	TCCGGA	2 cut(s)	331, 2078
KpnI	GGTACC	1 cut(s)	791
LmnI	GCTCC	3 cut(s)	956, 1597, 2081
Lsp1109I	GCAGC	6 cut(s)	1349, 1390, 1448, 1540, 1555, 1870
LweI	GCATC	3 cut(s)	1006, 1077, 1774
MaeI	CTAG	4 cut(s)	72, 210, 774, 1440
MaeII	ACGT	2 cut(s)	135, 483
MaeIII	GTNAC	7 cut(s)	13, 131, 679, 799, 1292, 1831, 1936
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	4 cut(s)	207, 1134, 1188, 1648
MluI	ACGCGT	1 cut(s)	1069
MmeI	TCCRAC	2 cut(s)	16, 1344
MroI	TCCGGA	2 cut(s)	331, 2078
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	9 cut(s)	216, 648, 962, 1118, 1419, 1503, 1584, 1701, 2170
MslI	CAYNNNNRTG	6 cut(s)	190, 384, 815, 1127, 1419, 1739
MspA1I	CMGCKG	1 cut(s)	524
MspCI	CTTAAG	2 cut(s)	647, 1700
MspI	CCGG	2 cut(s)	332, 2079
MspR9I	CCNGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	4 cut(s)	359, 945, 1267, 1531
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	2 cut(s)	1071, 1215
MwoI	GCNNNNNNNGC	3 cut(s)	521, 926, 1096
NdeI	CATATG	4 cut(s)	1396, 1695, 1888, 1993
NlaIII	CATG	9 cut(s)	189, 279, 863, 1393, 1766, 1780, 1804, 1909, 1937
NlaIV	GGNNCC	3 cut(s)	789, 1167, 1374
NmuCI	GTSAC	4 cut(s)	13, 131, 1831, 1936
NspI	RCATGY	2 cut(s)	189, 1393
OliI	CACNNNNGTG	1 cut(s)	1127
PaeR7I	CTCGAG	1 cut(s)	1649
PciI	ACATGT	1 cut(s)	1389
PctI	GAATGC	4 cut(s)	359, 945, 1267, 1531
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	5 cut(s)	328, 620, 874, 892, 2075
PflFI	GACNNNGTC	1 cut(s)	2054
PkrI	GCNGC	7 cut(s)	1339, 1377, 1380, 1438, 1555, 1570, 1885
PscI	ACATGT	1 cut(s)	1389
Psp6I	CCWGG	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	1160
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	789, 1167, 1374
PspPI	GGNCC	5 cut(s)	403, 853, 886, 1373, 1675
PsyI	GACNNNGTC	1 cut(s)	2054
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	4 cut(s)	27, 789, 911, 1210
RsaNI	GTAC	4 cut(s)	26, 788, 910, 1209
RseI	CAYNNNNRTG	6 cut(s)	190, 384, 815, 1127, 1419, 1739
SaqAI	TTAA	9 cut(s)	216, 648, 962, 1118, 1419, 1503, 1584, 1701, 2170
SatI	GCNGC	7 cut(s)	1338, 1376, 1379, 1437, 1554, 1569, 1884
Sau96I	GGNCC	5 cut(s)	403, 853, 886, 1373, 1675
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	4 cut(s)	207, 1134, 1188, 1648
SfaNI	GCATC	3 cut(s)	1006, 1077, 1774
Sfr274I	CTCGAG	1 cut(s)	1649
SlaI	CTCGAG	1 cut(s)	1649
SmiMI	CAYNNNNRTG	6 cut(s)	190, 384, 815, 1127, 1419, 1739
SmlI	CTYRAG	5 cut(s)	647, 866, 1052, 1649, 1700
SmoI	CTYRAG	5 cut(s)	647, 866, 1052, 1649, 1700
SsiI	CCGC	6 cut(s)	258, 624, 1213, 1376, 1529, 1903
SspMI	CTAG	4 cut(s)	72, 210, 774, 1440
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	1548, 1982
TaaI	ACNGT	4 cut(s)	510, 707, 1828, 2056
TaiI	ACGT	2 cut(s)	138, 486
TaqI	TCGA	5 cut(s)	382, 639, 1650, 1748, 2014
TauI	GCSGC	1 cut(s)	1378
TfiI	GAWTC	5 cut(s)	328, 620, 874, 892, 2075
Tru1I	TTAA	9 cut(s)	216, 648, 962, 1118, 1419, 1503, 1584, 1701, 2170
Tru9I	TTAA	9 cut(s)	216, 648, 962, 1118, 1419, 1503, 1584, 1701, 2170
TscAI	CASTG	5 cut(s)	726, 1762, 1858, 1885, 2076
TseFI	GTSAC	4 cut(s)	13, 131, 1831, 1936
TseI	GCWGC	6 cut(s)	1337, 1378, 1436, 1553, 1568, 1883
Tsp45I	GTSAC	4 cut(s)	13, 131, 1831, 1936
TspDTI	ATGAA	7 cut(s)	240, 441, 486, 685, 848, 1413, 1922
TspRI	CASTG	5 cut(s)	726, 1762, 1858, 1885, 2076
Tth111I	GACNNNGTC	1 cut(s)	2054
Vha464I	CTTAAG	2 cut(s)	647, 1700
XagI	CCTNNNNNAGG	1 cut(s)	1652
XapI	RAATTY	3 cut(s)	62, 173, 1578
XbaI	TCTAGA	1 cut(s)	209
XceI	RCATGY	2 cut(s)	189, 1393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	922
XhoI	CTCGAG	1 cut(s)	1649
XmiI	GTMKAC	1 cut(s)	1026
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	4 cut(s)	72, 210, 774, 1440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.