Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008783

Physical Location & Seq

Genomic Coordinates Reverse (-)

39850382 .. 39852340

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1959 bp

ATGTGGGGTCTTGCTTTTCCTGTTTGCTATGGTACAACTAGTGCAGTTTTGGAATTTGGTTTTGGATGTGGGAGTGTTTCTAGGTACTCTGAACTTAGACTTGCTAGCAATTTTGAGCTCAAGAAATGCTCTTCTTTTGTGTCGGCGTGGGCTTTGGAGGAACAGGCTATTGGGAATGAGATTAGTGTAGACAAATCGCAAAATGGGTTGTTAGGGGAATGTGAGAGCAAGGATGTTGTTGTGGAGGGAATTGAGGAGAGTGAAATTGTTGATGTGCGTGCGCTGGCATCGAGCTTACAGTTTGCGAAAACAGCAGATGATGTGGAAGAGGTTCTGAAGGACAAGGGTAATTTGCCCCTTCAAGTATTCTCGTCCATGATCAGGGGTTTTGGAAGAGACAAGTTAATGGATTCCGCATTTGCTGTTGTTGAATGGCTTAAGAGGAGGAAGGAAGAAACTAATGGTGTGATTACCCCAAACTTATTTATCTTTAATAGTCTTTTGGGTGCAGTGAAGCAATCTAAACAGTTTGGAGAAATGGATAAAGTCTTGGCTGATATGATGCAGGAAGGGGTGGAACCGAATGTTATAACTTACAATACTATAATGGCAATTTATGTAGAACAAGGACTAAGTACTAAGGCCCTTGATGTTCTTGAGGATATTCAGAAGAAGGGCTTGATTCCATCTTCAGTGACCTACTCTACAGCATTGCTGGCTTATCAGAGAATGCAAGATGGAATTGGAGCCTTAGAGTTCTTTGTCAAGGTCAGAGAAAAGTATCGTAATGGTGATATATGTAAAGTTTCAGAAGAAGACTGGGAAAATGAGTTTCCAAAGCTCGAGAACTTTACAAAACGTGTTTGCTACCAAGTGATGCGGCGGTGGCTTGTGATGGATGATAATTTAAGCATCAATGTGCTAAAACTTCTAGTAAAGATGGATAATGCTGGGGTCCCACTTGGTCGGGCAGAACATGAGCGCCTTTTGTGGGCTTGTACCCGTGGAGACCATTATAATGTGGCAAAAGAATTGTATAGTAGGATAAGAGAAAGGCATTCTGAAATAAGTCTATCTGTCTGTAATCACGTTATTTGGGTGATGGGAAAGGCTAAGAAATGGTGGGCAGCTTTGGAGATTTATGAGGATATGTTGGACAAGGGGCCAAAGCCAAATAACATGTCATATGAATTGGTAGTATCTCACTTTAATGTTCTTCTGACTGCTGCTAGAAAAAAGGGTATTTGGAGATGGGGTGTCAGGTTGCTCAACAAGATGGAAGAGAAAGGTCTTAAACCGAGAAGTAAGGAATGGAATGCAGTTCTAGTTGCCTGTTCCAAGGCTGCAGAAACGTCTGCTGCTGTCCAGATTTTTAGAAGAATGGTAGAACAAGGTCAAAAACCCACAATCCTTTCTTATGGGGCCTTGCTCAGTGCCCTTGAAAAGGGGAAACTCTATGATGAGGCTCGCCAGGTGTGGGAACATATGATCAAGGTTGGTGTAAAACCCAACCTGTATGCATACACAATCATGGCCTCAGTTTTCAGTGGACAAGGAAAATTTAATTTGGTAGAGACCATTGTTCAAGAGATGGTTTCATCAGGGATTGAGCCAACCGTAGTCACATACAATGCAATTATTAGTGGCTGTGCACGAAATGATTCAAGCAGTGCTGATGCATATGACTGGTTTGATCGGATGAAAGCTAACAATATTCCTCCAAACAATGTTACTTATGAAATGATGATTGAGGCTCTTGCTAAAGAAGGTAAACCAAGGCTTGCATACGAGTTATATTTGAGGGCTCAAAACCAGGGCATTCACCTCTCTGCAAAGGCTTATGATATTTTGGTCCAACCCTCAATGGTTTCTGGAGCTAGTTTTGATCTAAAACTCTTAGGGCCTCGTCCACCTGAGCAGAAAAAGGAAAATTTGCAAGGTAGAAAATCTTCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

652

Amino Acids

73.4

Weight (kDa)

7.05

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	157 - 208	2.4e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	159 - 203	3.3e-08	PPR repeat family
PPR_3	PF13812	182 - 241	5.2e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	194 - 238	5.6e-11	PPR repeat family
PPR_long	PF17177	330 - 479	1.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	421 - 480	1.1e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	441 - 606	1.6e-13	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	468 - 513	7.6e-08	PPR repeat family
PPR_3	PF13812	494 - 551	4.8e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	515 - 552	1.7e-06	PPR repeat family
PPR_3	PF13812	527 - 586	1.9e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	559 - 588	1.2e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46610 AT3G46610
fragaria_vesca	FvH4_7g06820 FvH4_7g06820 FvH4_7g06820
malus_domestica	MD09G1019500.v1.1 MD17G1020100.v1.1
prunus_persica	Prupe.2G095300_v2.0.a1 Prupe.2G095300_v2.0.a1
pyrus_communis	pycom111g01620
rosa_chinensis	RchiOBHm_Chr1g0336521
rosa_laevigata	RLG00000029357
rosa_multiflora	Rmu_sc0001981.1_g000003 Rmu_sc0005044.1_g000026 Rmu_sc0009324.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315530
rosa_rugosa	Rorug01G0125900
rosa_samantha	Rh1AG147000 Rh1BG115100 Rh1CG138300 Rh1DG153700
rosa_wichuraiana	Rw1G009520 Rw1G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	590, 1017
AccI	GTMKAC	1 cut(s)	189
AciI	CCGC	3 cut(s)	414, 880, 883
AcsI	RAATTY	3 cut(s)	53, 1559, 1930
AcuI	CTGAAG	2 cut(s)	356, 675
AfaI	GTAC	4 cut(s)	34, 86, 637, 1000
AfiI	CCNNNNNNNGG	4 cut(s)	381, 991, 1444, 1477
AflII	CTTAAG	1 cut(s)	437
AflIII	ACRYGT	2 cut(s)	859, 1179
AgsI	TTSAA	5 cut(s)	362, 431, 1442, 1586, 1665
AhlI	ACTAGT	1 cut(s)	38
AjnI	CCWGG	2 cut(s)	1470, 1812
AjuI	GAANNNNNNNTTGG	4 cut(s)	45, 77, 153, 185
AluBI	AGCT	6 cut(s)	118, 294, 841, 1130, 1706, 1877
AluI	AGCT	6 cut(s)	118, 294, 841, 1130, 1706, 1877
Alw21I	GWGCWC	2 cut(s)	120, 1654
Alw26I	GTCTC	3 cut(s)	390, 1002, 1568
Alw44I	GTGCAC	1 cut(s)	1650
Ama87I	CYCGRG	1 cut(s)	842
AoxI	GGCC	5 cut(s)	642, 1163, 1422, 1533, 1901
ApaLI	GTGCAC	1 cut(s)	1650
ApeKI	GCWGC	4 cut(s)	1127, 1226, 1343, 1358
ApoI	RAATTY	3 cut(s)	53, 1559, 1930
ArsI	GACNNNNNNTTYG	2 cut(s)	1166, 1198
Asp700I	GAANNNNTTC	3 cut(s)	330, 1660, 1948
AspLEI	GCGC	2 cut(s)	283, 984
AspS9I	GGNCC	6 cut(s)	643, 955, 1163, 1422, 1852, 1901
AsuHPI	GGTGA	3 cut(s)	803, 1111, 1814
AsuNHI	GCTAGC	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	842
AvaII	GGWCC	2 cut(s)	955, 1852
BaeGI	GKGCMC	2 cut(s)	1438, 1654
BanII	GRGCYC	2 cut(s)	120, 1807
BarI	GAAGNNNNNNTAC	1 cut(s)	1933
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	2 cut(s)	120, 1654
BbvI	GCAGC	4 cut(s)	1139, 1213, 1330, 1345
BccI	CCATC	8 cut(s)	694, 731, 889, 934, 1096, 1245, 1270, 1585
BciT130I	CCWGG	2 cut(s)	1472, 1814
BclI	TGATCA	2 cut(s)	378, 1488
BcoDI	GTCTC	3 cut(s)	390, 1002, 1568
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	7 cut(s)	39, 81, 105, 932, 1230, 1325, 1878
BfmI	CTRYAG	2 cut(s)	705, 1344
BfoI	RGCGCY	1 cut(s)	985
BfrI	CTTAAG	1 cut(s)	437
BisI	GCNGC	5 cut(s)	881, 1128, 1227, 1344, 1359
BlsI	GCNGC	5 cut(s)	882, 1129, 1228, 1345, 1360
BmcAI	AGTACT	1 cut(s)	637
Bme1390I	CCNGG	2 cut(s)	1472, 1814
Bme18I	GGWCC	2 cut(s)	955, 1852
BmeT110I	CYCGRG	1 cut(s)	842
BmgT120I	GGNCC	6 cut(s)	643, 955, 1163, 1422, 1852, 1901
BmiI	GGNNCC	6 cut(s)	579, 748, 956, 957, 1164, 1423
BmrFI	CCNGG	2 cut(s)	1472, 1814
BmrI	ACTGGG	1 cut(s)	829
BmsI	GCATC	5 cut(s)	296, 552, 867, 921, 1666
BmtI	GCTAGC	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	829
BpiI	GAAGAC	1 cut(s)	822
BpmI	CTGGAG	1 cut(s)	1893
Bpu10I	CCTNAGC	1 cut(s)	1914
BpuEI	CTTGAG	2 cut(s)	104, 677
BsaI	GGTCTC	2 cut(s)	1002, 1568
BsaJI	CCNNGG	4 cut(s)	1003, 1338, 1775, 1813
BsaXI	ACNNNNNCTCC	2 cut(s)	1240, 1270
Bsc4I	CCNNNNNNNGG	4 cut(s)	381, 991, 1444, 1477
Bse1I	ACTGG	2 cut(s)	824, 1691
Bse3DI	GCAATG	1 cut(s)	710
BseBI	CCWGG	2 cut(s)	1472, 1814
BseDI	CCNNGG	4 cut(s)	1003, 1338, 1775, 1813
BseGI	GGATG	4 cut(s)	71, 238, 904, 1704
BseLI	CCNNNNNNNGG	4 cut(s)	381, 991, 1444, 1477
BseMI	GCAATG	1 cut(s)	710
BseMII	CTCAG	3 cut(s)	1444, 1551, 1905
BseNI	ACTGG	2 cut(s)	824, 1691
BseRI	GAGGAG	2 cut(s)	269, 457
BseSI	GKGCMC	2 cut(s)	1438, 1654
BseXI	GCAGC	4 cut(s)	1139, 1213, 1330, 1345
BseYI	CCCAGC	1 cut(s)	950
BsgI	GTGCAG	2 cut(s)	63, 528
BshFI	GGCC	5 cut(s)	644, 1165, 1424, 1535, 1903
BsiHKAI	GWGCWC	2 cut(s)	120, 1654
BsiHKCI	CYCGRG	1 cut(s)	842
BslFI	GGGAC	1 cut(s)	941
BslI	CCNNNNNNNGG	4 cut(s)	381, 991, 1444, 1477
BsmAI	GTCTC	3 cut(s)	390, 1002, 1568
BsmFI	GGGAC	1 cut(s)	941
BsmI	GAATGC	4 cut(s)	735, 1057, 1321, 1818
BsnI	GGCC	5 cut(s)	644, 1165, 1424, 1535, 1903
Bso31I	GGTCTC	2 cut(s)	1002, 1568
BsoBI	CYCGRG	1 cut(s)	842
Bsp1286I	GDGCHC	4 cut(s)	120, 1438, 1654, 1807
Bsp143I	GATC	4 cut(s)	378, 1488, 1693, 1885
BspACI	CCGC	3 cut(s)	414, 880, 883
BspANI	GGCC	5 cut(s)	644, 1165, 1424, 1535, 1903
BspCNI	CTCAG	3 cut(s)	1443, 1550, 1906
BspLI	GGNNCC	6 cut(s)	579, 748, 956, 957, 1164, 1423
BspMAI	CTGCAG	1 cut(s)	1348
BspOI	GCTAGC	1 cut(s)	108
BspQI	GCTCTTC	1 cut(s)	136
BspTI	CTTAAG	1 cut(s)	437
BspTNI	GGTCTC	2 cut(s)	1002, 1568
BsrDI	GCAATG	1 cut(s)	710
BsrI	ACTGG	2 cut(s)	824, 1691
BssECI	CCNNGG	4 cut(s)	1003, 1338, 1775, 1813
BssMI	GATC	4 cut(s)	378, 1488, 1693, 1885
BssT1I	CCWWGG	2 cut(s)	1338, 1775
Bst2UI	CCWGG	2 cut(s)	1472, 1814
Bst4CI	ACNGT	3 cut(s)	300, 528, 1618
Bst6I	CTCTTC	4 cut(s)	136, 321, 388, 1275
BstAFI	CTTAAG	1 cut(s)	437
BstC8I	GCNNGC	6 cut(s)	106, 279, 285, 717, 1468, 1782
BstDEI	CTNAG	9 cut(s)	95, 632, 639, 751, 1113, 1430, 1537, 1897, 1914
BstDSI	CCRYGG	1 cut(s)	1003
BstENI	CCTNNNNNAGG	1 cut(s)	1442
BstF5I	GGATG	4 cut(s)	71, 238, 904, 1704
BstH2I	RGCGCY	1 cut(s)	985
BstHHI	GCGC	2 cut(s)	283, 984
BstKTI	GATC	4 cut(s)	381, 1491, 1696, 1888
BstMAI	GTCTC	3 cut(s)	390, 1002, 1568
BstMBI	GATC	4 cut(s)	378, 1488, 1693, 1885
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 716, 886
BstNI	CCWGG	2 cut(s)	1472, 1814
BstNSI	RCATGY	1 cut(s)	1183
BstSCI	CCNGG	2 cut(s)	1470, 1812
BstSFI	CTRYAG	2 cut(s)	705, 1344
BstSLI	GKGCMC	2 cut(s)	1438, 1654
BstV1I	GCAGC	4 cut(s)	1139, 1213, 1330, 1345
BstV2I	GAAGAC	1 cut(s)	822
BsuRI	GGCC	5 cut(s)	644, 1165, 1424, 1535, 1903
BtgI	CCRYGG	1 cut(s)	1003
BtsCI	GGATG	4 cut(s)	71, 238, 904, 1704
BtsI	GCAGTG	2 cut(s)	516, 1675
BtsIMutI	CAGTG	5 cut(s)	516, 699, 1438, 1552, 1675
Cac8I	GCNNGC	6 cut(s)	106, 279, 285, 717, 1468, 1782
CfoI	GCGC	2 cut(s)	283, 984
Cfr13I	GGNCC	6 cut(s)	643, 955, 1163, 1422, 1852, 1901
Csp6I	GTAC	4 cut(s)	33, 85, 636, 999
CviAII	CATG	4 cut(s)	376, 977, 1180, 1531
CviQI	GTAC	4 cut(s)	33, 85, 636, 999
DdeI	CTNAG	9 cut(s)	95, 632, 639, 751, 1113, 1430, 1537, 1897, 1914
DpnI	GATC	4 cut(s)	380, 1490, 1695, 1887
DpnII	GATC	4 cut(s)	378, 1488, 1693, 1885
Eam1104I	CTCTTC	4 cut(s)	136, 321, 388, 1275
EarI	CTCTTC	4 cut(s)	136, 321, 388, 1275
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	1338, 1775
Eco24I	GRGCYC	2 cut(s)	120, 1807
Eco31I	GGTCTC	2 cut(s)	1002, 1568
Eco47I	GGWCC	2 cut(s)	955, 1852
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	2 cut(s)	356, 675
Eco88I	CYCGRG	1 cut(s)	842
EcoICRI	GAGCTC	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	1442
EcoO109I	RGGNCCY	4 cut(s)	643, 955, 1422, 1901
EcoRII	CCWGG	2 cut(s)	1470, 1812
EcoT14I	CCWWGG	2 cut(s)	1338, 1775
EcoT22I	ATGCAT	2 cut(s)	1522, 1681
EcoT38I	GRGCYC	2 cut(s)	120, 1807
ErhI	CCWWGG	2 cut(s)	1338, 1775
FaeI	CATG	4 cut(s)	379, 980, 1183, 1534
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FaqI	GGGAC	1 cut(s)	941
FatI	CATG	4 cut(s)	375, 976, 1179, 1530
FauNDI	CATATG	3 cut(s)	1186, 1485, 1681
FbaI	TGATCA	2 cut(s)	378, 1488
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	881, 1128, 1227, 1344, 1359
FokI	GGATG	4 cut(s)	78, 245, 911, 1711
FriOI	GRGCYC	2 cut(s)	120, 1807
Fsp4HI	GCNGC	5 cut(s)	881, 1128, 1227, 1344, 1359
FspBI	CTAG	7 cut(s)	39, 81, 105, 932, 1230, 1325, 1878
GlaI	GCGC	2 cut(s)	282, 983
GluI	GCNGC	5 cut(s)	881, 1128, 1227, 1344, 1359
GsaI	CCCAGC	1 cut(s)	954
GsuI	CTGGAG	1 cut(s)	1893
HaeII	RGCGCY	1 cut(s)	985
HaeIII	GGCC	5 cut(s)	644, 1165, 1424, 1535, 1903
HhaI	GCGC	2 cut(s)	283, 984
Hin1II	CATG	4 cut(s)	379, 980, 1183, 1534
Hin6I	GCGC	2 cut(s)	281, 982
HinP1I	GCGC	2 cut(s)	281, 982
HinfI	GANTC	3 cut(s)	410, 682, 1661
HphI	GGTGA	3 cut(s)	803, 1111, 1814
Hpy166II	GTNNAC	5 cut(s)	190, 1550, 1652, 1772, 1910
Hpy188I	TCNGA	9 cut(s)	91, 336, 669, 726, 773, 811, 1063, 1221, 1698
Hpy188III	TCNNGA	6 cut(s)	121, 656, 844, 1366, 1586, 1872
Hpy8I	GTNNAC	5 cut(s)	190, 1550, 1652, 1772, 1910
HpyAV	CCTTC	6 cut(s)	331, 368, 442, 563, 667, 1760
HpyCH4III	ACNGT	3 cut(s)	300, 528, 1618
HpyCH4IV	ACGT	3 cut(s)	859, 1089, 1352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 716, 886
HpyF3I	CTNAG	9 cut(s)	95, 632, 639, 751, 1113, 1430, 1537, 1897, 1914
HpySE526I	ACGT	3 cut(s)	859, 1089, 1352
Hsp92II	CATG	4 cut(s)	379, 980, 1183, 1534
HspAI	GCGC	2 cut(s)	281, 982
KflI	GGGWCCC	1 cut(s)	955
Ksp22I	TGATCA	2 cut(s)	378, 1488
Kzo9I	GATC	4 cut(s)	378, 1488, 1693, 1885
LguI	GCTCTTC	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	746, 1874
Lsp1109I	GCAGC	4 cut(s)	1139, 1213, 1330, 1345
LweI	GCATC	5 cut(s)	296, 552, 867, 921, 1666
MaeI	CTAG	7 cut(s)	39, 81, 105, 932, 1230, 1325, 1878
MaeII	ACGT	3 cut(s)	859, 1089, 1352
MaeIII	GTNAC	3 cut(s)	694, 1621, 1729
MalI	GATC	4 cut(s)	380, 1490, 1695, 1887
MboI	GATC	4 cut(s)	378, 1488, 1693, 1885
MhlI	GDGCHC	4 cut(s)	120, 1438, 1654, 1807
MmeI	TCCRAC	2 cut(s)	1134, 1879
Mph1103I	ATGCAT	2 cut(s)	1522, 1681
MroXI	GAANNNNTTC	3 cut(s)	330, 1660, 1948
MseI	TTAA	7 cut(s)	404, 438, 492, 908, 1209, 1293, 1563
MslI	CAYNNNNRTG	4 cut(s)	917, 1017, 1209, 1529
MspCI	CTTAAG	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	1472, 1814
Mva1269I	GAATGC	4 cut(s)	735, 1057, 1321, 1818
MvaI	CCWGG	2 cut(s)	1472, 1814
MwoI	GCNNNNNNNGC	3 cut(s)	311, 716, 886
NdeI	CATATG	3 cut(s)	1186, 1485, 1681
NdeII	GATC	4 cut(s)	378, 1488, 1693, 1885
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	4 cut(s)	379, 980, 1183, 1534
NlaIV	GGNNCC	6 cut(s)	579, 748, 956, 957, 1164, 1423
NmuCI	GTSAC	2 cut(s)	694, 1621
NsiI	ATGCAT	2 cut(s)	1522, 1681
NspI	RCATGY	1 cut(s)	1183
PaeR7I	CTCGAG	1 cut(s)	842
PciI	ACATGT	1 cut(s)	1179
PciSI	GCTCTTC	1 cut(s)	136
PctI	GAATGC	4 cut(s)	735, 1057, 1321, 1818
PdmI	GAANNNNTTC	3 cut(s)	330, 1660, 1948
PfeI	GAWTC	3 cut(s)	410, 682, 1661
PkrI	GCNGC	5 cut(s)	882, 1129, 1228, 1345, 1360
PpuMI	RGGWCCY	1 cut(s)	955
PscI	ACATGT	1 cut(s)	1179
PsiI	TTATAA	2 cut(s)	590, 1017
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	955
Psp6I	CCWGG	2 cut(s)	1470, 1812
PspFI	CCCAGC	1 cut(s)	950
PspGI	CCWGG	2 cut(s)	1470, 1812
PspN4I	GGNNCC	6 cut(s)	579, 748, 956, 957, 1164, 1423
PspPI	GGNCC	6 cut(s)	643, 955, 1163, 1422, 1852, 1901
PspPPI	RGGWCCY	1 cut(s)	955
PstI	CTGCAG	1 cut(s)	1348
RsaI	GTAC	4 cut(s)	34, 86, 637, 1000
RsaNI	GTAC	4 cut(s)	33, 85, 636, 999
RseI	CAYNNNNRTG	4 cut(s)	917, 1017, 1209, 1529
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	136
SaqAI	TTAA	7 cut(s)	404, 438, 492, 908, 1209, 1293, 1563
SatI	GCNGC	5 cut(s)	881, 1128, 1227, 1344, 1359
Sau3AI	GATC	4 cut(s)	378, 1488, 1693, 1885
Sau96I	GGNCC	6 cut(s)	643, 955, 1163, 1422, 1852, 1901
ScaI	AGTACT	1 cut(s)	637
ScrFI	CCNGG	2 cut(s)	1472, 1814
SduI	GDGCHC	4 cut(s)	120, 1438, 1654, 1807
SfaNI	GCATC	5 cut(s)	296, 552, 867, 921, 1666
SfcI	CTRYAG	2 cut(s)	705, 1344
Sfr274I	CTCGAG	1 cut(s)	842
SinI	GGWCC	2 cut(s)	955, 1852
SlaI	CTCGAG	1 cut(s)	842
SmiMI	CAYNNNNRTG	4 cut(s)	917, 1017, 1209, 1529
SmlI	CTYRAG	4 cut(s)	119, 437, 656, 842
SmoI	CTYRAG	4 cut(s)	119, 437, 656, 842
SpeI	ACTAGT	1 cut(s)	38
SsiI	CCGC	3 cut(s)	414, 880, 883
SspI	AATATT	1 cut(s)	1714
SspMI	CTAG	7 cut(s)	39, 81, 105, 932, 1230, 1325, 1878
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	1470, 1812
StyI	CCWWGG	2 cut(s)	1338, 1775
TaaI	ACNGT	3 cut(s)	300, 528, 1618
TaiI	ACGT	3 cut(s)	862, 1092, 1355
TaqI	TCGA	2 cut(s)	290, 843
TatI	WGTACW	1 cut(s)	635
TauI	GCSGC	1 cut(s)	883
TfiI	GAWTC	3 cut(s)	410, 682, 1661
Tru1I	TTAA	7 cut(s)	404, 438, 492, 908, 1209, 1293, 1563
Tru9I	TTAA	7 cut(s)	404, 438, 492, 908, 1209, 1293, 1563
TscAI	CASTG	5 cut(s)	516, 699, 1438, 1552, 1675
TseFI	GTSAC	2 cut(s)	694, 1621
TseI	GCWGC	4 cut(s)	1127, 1226, 1343, 1358
Tsp45I	GTSAC	2 cut(s)	694, 1621
TspDTI	ATGAA	4 cut(s)	1203, 1587, 1715, 1752
TspRI	CASTG	5 cut(s)	516, 699, 1438, 1552, 1675
Vha464I	CTTAAG	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	1650
VpaK11BI	GGWCC	2 cut(s)	955, 1852
XagI	CCTNNNNNAGG	1 cut(s)	1442
XapI	RAATTY	3 cut(s)	53, 1559, 1930
XceI	RCATGY	1 cut(s)	1183
XhoI	CTCGAG	1 cut(s)	842
XmiI	GTMKAC	1 cut(s)	189
XmnI	GAANNNNTTC	3 cut(s)	330, 1660, 1948
XspI	CTAG	7 cut(s)	39, 81, 105, 932, 1230, 1325, 1878
ZrmI	AGTACT	1 cut(s)	637
Zsp2I	ATGCAT	2 cut(s)	1522, 1681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.