Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001981.1

Orthogroup ID

OG0008783

Physical Location & Seq

Genomic Coordinates Reverse (-)

15631 .. 16704

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001981.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgcaagctttaatcaccctgccatctagagctgaaacctggatagtcccccagttgggttcttgtaaacttagtactcggagaaggagaagaaaaaagatgtggggtcttgcttttcctgtttgctatggtacaactagtgcagttttgaaatttggttttggatgtgggagtgtttctaggtattctgaacttagacttgctagcaattgggagcccaacaagggctcttcttttgtgtcggcttgggctttggaggaacaagcttttgggaatgagattagtgtagacaaatcgcaacatgggttgttaggggaatgtgagagcaaggatgttgctgtggagggaattgaggagagtgaaattgttgatgtgcgtgcgctggcatcaagcttacagtttgcgaaaacagcagatgatgtggaagaggttctgaaggacaagggtaatttgcctcttcaagtattctcatccatgatcaggggttttggaagagacaagtttatggattccgcgtttgctgttgttgaatggcttaagaggaggaaggaagaaactaatggtatgattacccccaacttatttatctttaatagtcttttgggtgcagtgaagcaatctaaacagtttggagaaatggataaagtcttggctgatatgacgcaggaaggggtggaaccgaatgttataacttacaatactataatggcaatttatgtagaacaaggactaagtagtaaggcccttgatgttcttgaggatattcagaagaagggcttgattccatcttcagtgacctactctacagcattgctggcttatcagagaatgcaagatggagttggagccttagagttctttgtcgaggtcagagaaaagtatcgtaatggtgatatatgtaaagtttcagaagaagactgggaaaatgaatttctaaagctcgagaactttacaaaacgtgtttgctaccaagtgatgcggcggtggcttgtggtggatgataatttaagcatcagtgtgctaaaacttctagtaaagatggataatgctggggtaccacttggtcggttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

357

Amino Acids

40.14

Weight (kDa)

5.63

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46610 AT3G46610
fragaria_vesca	FvH4_7g06820 FvH4_7g06820 FvH4_7g06820
malus_domestica	MD09G1019500.v1.1 MD17G1020100.v1.1
prunus_persica	Prupe.2G095300_v2.0.a1 Prupe.2G095300_v2.0.a1
pyrus_communis	pycom111g01620
rosa_chinensis	RchiOBHm_Chr1g0336521
rosa_laevigata	RLG00000029357
rosa_multiflora	Rmu_sc0001981.1_g000003 Rmu_sc0005044.1_g000026 Rmu_sc0009324.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315530
rosa_rugosa	Rorug01G0125900
rosa_samantha	Rh1AG147000 Rh1BG115100 Rh1CG138300 Rh1DG153700
rosa_wichuraiana	Rw1G009520 Rw1G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
Acc65I	GGTACC	1 cut(s)	1054
AccB1I	GGYRCC	1 cut(s)	1054
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	1 cut(s)	515
AciI	CCGC	3 cut(s)	513, 979, 982
AcsI	RAATTY	2 cut(s)	152, 929
AcuI	CTGAAG	2 cut(s)	455, 774
AfaI	GTAC	3 cut(s)	76, 133, 1056
AfiI	CCNNNNNNNGG	4 cut(s)	55, 56, 224, 480
AflII	CTTAAG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	958
AgsI	TTSAA	3 cut(s)	151, 461, 530
AhlI	ACTAGT	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	5 cut(s)	8, 32, 266, 393, 940
AluI	AGCT	5 cut(s)	8, 32, 266, 393, 940
Alw26I	GTCTC	1 cut(s)	489
Ama87I	CYCGRG	1 cut(s)	941
AoxI	GGCC	1 cut(s)	741
ApoI	RAATTY	2 cut(s)	152, 929
Asp700I	GAANNNNTTC	1 cut(s)	429
Asp718I	GGTACC	1 cut(s)	1054
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	742
AsuHPI	GGTGA	2 cut(s)	7, 902
AsuNHI	GCTAGC	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	941
BanI	GGYRCC	1 cut(s)	1054
BanII	GRGCYC	2 cut(s)	219, 230
BbsI	GAAGAC	1 cut(s)	921
BccI	CCATC	4 cut(s)	31, 793, 830, 1033
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	489
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	5 cut(s)	27, 138, 180, 204, 1031
BfmI	CTRYAG	1 cut(s)	804
BfrI	CTTAAG	1 cut(s)	536
BisI	GCNGC	1 cut(s)	980
BlsI	GCNGC	1 cut(s)	981
BmcAI	AGTACT	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	941
BmgT120I	GGNCC	1 cut(s)	742
BmiI	GGNNCC	4 cut(s)	216, 678, 847, 1056
BmrFI	CCNGG	1 cut(s)	40
BmrI	ACTGGG	2 cut(s)	46, 928
BmsI	GCATC	3 cut(s)	395, 966, 1020
BmtI	GCTAGC	1 cut(s)	207
BmuI	ACTGGG	2 cut(s)	46, 928
BpiI	GAAGAC	1 cut(s)	921
BpuEI	CTTGAG	1 cut(s)	776
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 56, 224, 480
Bse1I	ACTGG	2 cut(s)	52, 923
Bse3DI	GCAATG	1 cut(s)	809
BseBI	CCWGG	1 cut(s)	40
BseGI	GGATG	4 cut(s)	170, 337, 470, 1003
BseLI	CCNNNNNNNGG	4 cut(s)	55, 56, 224, 480
BseMI	GCAATG	1 cut(s)	809
BseNI	ACTGG	2 cut(s)	52, 923
BseRI	GAGGAG	2 cut(s)	368, 556
BseYI	CCCAGC	1 cut(s)	1049
BsgI	GTGCAG	2 cut(s)	162, 627
Bsh1236I	CGCG	1 cut(s)	515
BshFI	GGCC	1 cut(s)	743
BshNI	GGYRCC	1 cut(s)	1054
BsiHKCI	CYCGRG	1 cut(s)	941
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	4 cut(s)	55, 56, 224, 480
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	834
BsnI	GGCC	1 cut(s)	743
BsoBI	CYCGRG	1 cut(s)	941
Bsp1286I	GDGCHC	2 cut(s)	219, 230
Bsp143I	GATC	1 cut(s)	477
BspACI	CCGC	3 cut(s)	513, 979, 982
BspANI	GGCC	1 cut(s)	743
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	4 cut(s)	216, 678, 847, 1056
BspOI	GCTAGC	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	1054
BspTI	CTTAAG	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	809
BsrI	ACTGG	2 cut(s)	52, 923
BssMI	GATC	1 cut(s)	477
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	399, 627
Bst6I	CTCTTC	4 cut(s)	235, 420, 462, 487
BstAFI	CTTAAG	1 cut(s)	536
BstC8I	GCNNGC	5 cut(s)	6, 205, 378, 384, 816
BstDEI	CTNAG	4 cut(s)	71, 194, 731, 850
BstF5I	GGATG	4 cut(s)	170, 337, 470, 1003
BstFNI	CGCG	1 cut(s)	515
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	1 cut(s)	480
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	1 cut(s)	477
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 815, 985
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	804
BstUI	CGCG	1 cut(s)	515
BstV2I	GAAGAC	1 cut(s)	921
BsuRI	GGCC	1 cut(s)	743
BtsCI	GGATG	4 cut(s)	170, 337, 470, 1003
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	3 cut(s)	615, 798, 1021
Cac8I	GCNNGC	5 cut(s)	6, 205, 378, 384, 816
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	742
CseI	GACGC	1 cut(s)	670
Csp6I	GTAC	3 cut(s)	75, 132, 1055
CviAII	CATG	2 cut(s)	302, 475
CviQI	GTAC	3 cut(s)	75, 132, 1055
DdeI	CTNAG	4 cut(s)	71, 194, 731, 850
DpnI	GATC	1 cut(s)	479
DpnII	GATC	1 cut(s)	477
Eam1104I	CTCTTC	4 cut(s)	235, 420, 462, 487
EarI	CTCTTC	4 cut(s)	235, 420, 462, 487
Eco24I	GRGCYC	2 cut(s)	219, 230
Eco57I	CTGAAG	2 cut(s)	455, 774
Eco88I	CYCGRG	1 cut(s)	941
EcoO109I	RGGNCCY	1 cut(s)	742
EcoRII	CCWGG	1 cut(s)	38
EcoT38I	GRGCYC	2 cut(s)	219, 230
FaeI	CATG	2 cut(s)	305, 478
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	301, 474
FbaI	TGATCA	1 cut(s)	477
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	980
FokI	GGATG	4 cut(s)	177, 344, 457, 1010
FriOI	GRGCYC	2 cut(s)	219, 230
Fsp4HI	GCNGC	1 cut(s)	980
FspBI	CTAG	5 cut(s)	27, 138, 180, 204, 1031
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	980
GsaI	CCCAGC	1 cut(s)	1053
HaeIII	GGCC	1 cut(s)	743
HgaI	GACGC	1 cut(s)	670
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	2 cut(s)	305, 478
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HindIII	AAGCTT	3 cut(s)	6, 264, 391
HinfI	GANTC	2 cut(s)	509, 781
HphI	GGTGA	2 cut(s)	7, 902
Hpy166II	GTNNAC	2 cut(s)	68, 289
Hpy188I	TCNGA	7 cut(s)	81, 190, 435, 768, 825, 872, 910
Hpy188III	TCNNGA	3 cut(s)	27, 755, 943
Hpy8I	GTNNAC	2 cut(s)	68, 289
HpyAV	CCTTC	5 cut(s)	78, 430, 541, 662, 766
HpyCH4III	ACNGT	2 cut(s)	399, 627
HpyCH4IV	ACGT	1 cut(s)	958
HpyCH4V	TGCA	4 cut(s)	4, 143, 608, 832
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 815, 985
HpyF3I	CTNAG	4 cut(s)	71, 194, 731, 850
HpySE526I	ACGT	1 cut(s)	958
Hsp92II	CATG	2 cut(s)	305, 478
HspAI	GCGC	1 cut(s)	380
KpnI	GGTACC	1 cut(s)	1058
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	1 cut(s)	477
LguI	GCTCTTC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	214, 845
LweI	GCATC	3 cut(s)	395, 966, 1020
MaeI	CTAG	5 cut(s)	27, 138, 180, 204, 1031
MaeII	ACGT	1 cut(s)	958
MaeIII	GTNAC	1 cut(s)	793
MalI	GATC	1 cut(s)	479
MboI	GATC	1 cut(s)	477
MfeI	CAATTG	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	219, 230
MluCI	AATT	8 cut(s)	152, 208, 348, 363, 448, 711, 929, 1003
MmeI	TCCRAC	1 cut(s)	823
MnlI	CCTC	9 cut(s)	250, 337, 346, 421, 465, 534, 537, 751, 859
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	4 cut(s)	11, 537, 591, 1007
MslI	CAYNNNNRTG	1 cut(s)	1016
MspCI	CTTAAG	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	40
MunI	CAATTG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	3 cut(s)	410, 815, 985
NdeII	GATC	1 cut(s)	477
NheI	GCTAGC	1 cut(s)	203
NlaIII	CATG	2 cut(s)	305, 478
NlaIV	GGNNCC	4 cut(s)	216, 678, 847, 1056
NmuCI	GTSAC	1 cut(s)	793
PaeR7I	CTCGAG	1 cut(s)	941
PciSI	GCTCTTC	1 cut(s)	235
PctI	GAATGC	1 cut(s)	834
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	509, 781
PkrI	GCNGC	1 cut(s)	981
PsiI	TTATAA	1 cut(s)	689
Psp6I	CCWGG	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	1049
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	4 cut(s)	216, 678, 847, 1056
PspPI	GGNCC	1 cut(s)	742
RsaI	GTAC	3 cut(s)	76, 133, 1056
RsaNI	GTAC	3 cut(s)	75, 132, 1055
RseI	CAYNNNNRTG	1 cut(s)	1016
SapI	GCTCTTC	1 cut(s)	235
SaqAI	TTAA	4 cut(s)	11, 537, 591, 1007
SatI	GCNGC	1 cut(s)	980
Sau3AI	GATC	1 cut(s)	477
Sau96I	GGNCC	1 cut(s)	742
ScaI	AGTACT	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	2 cut(s)	219, 230
SfaNI	GCATC	3 cut(s)	395, 966, 1020
SfcI	CTRYAG	1 cut(s)	804
Sfr274I	CTCGAG	1 cut(s)	941
SlaI	CTCGAG	1 cut(s)	941
SmiMI	CAYNNNNRTG	1 cut(s)	1016
SmlI	CTYRAG	3 cut(s)	536, 755, 941
SmoI	CTYRAG	3 cut(s)	536, 755, 941
SpeI	ACTAGT	1 cut(s)	137
Sse9I	AATT	8 cut(s)	152, 208, 348, 363, 448, 711, 929, 1003
SsiI	CCGC	3 cut(s)	513, 979, 982
SspMI	CTAG	5 cut(s)	27, 138, 180, 204, 1031
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	399, 627
TaiI	ACGT	1 cut(s)	961
TaqI	TCGA	2 cut(s)	864, 942
TasI	AATT	8 cut(s)	152, 208, 348, 363, 448, 711, 929, 1003
TatI	WGTACW	1 cut(s)	74
TauI	GCSGC	1 cut(s)	982
TfiI	GAWTC	2 cut(s)	509, 781
Tru1I	TTAA	4 cut(s)	11, 537, 591, 1007
Tru9I	TTAA	4 cut(s)	11, 537, 591, 1007
TscAI	CASTG	3 cut(s)	615, 798, 1021
TseFI	GTSAC	1 cut(s)	793
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	1 cut(s)	942
TspRI	CASTG	3 cut(s)	615, 798, 1021
Vha464I	CTTAAG	1 cut(s)	536
XapI	RAATTY	2 cut(s)	152, 929
XbaI	TCTAGA	1 cut(s)	26
XhoI	CTCGAG	1 cut(s)	941
XmiI	GTMKAC	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	5 cut(s)	27, 138, 180, 204, 1031
ZrmI	AGTACT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.