Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G46610 AT3G46610 |
| fragaria_vesca | FvH4_7g06820 FvH4_7g06820 FvH4_7g06820 |
| malus_domestica | MD09G1019500.v1.1 MD17G1020100.v1.1 |
| prunus_persica | Prupe.2G095300_v2.0.a1 Prupe.2G095300_v2.0.a1 |
| pyrus_communis | pycom111g01620 |
| rosa_chinensis | RchiOBHm_Chr1g0336521 |
| rosa_laevigata | RLG00000029357 |
| rosa_multiflora | Rmu_sc0001981.1_g000003 Rmu_sc0005044.1_g000026 Rmu_sc0009324.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00315530 |
| rosa_rugosa | Rorug01G0125900 |
| rosa_samantha | Rh1AG147000 Rh1BG115100 Rh1CG138300 Rh1DG153700 |
| rosa_wichuraiana | Rw1G009520 Rw1G011910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1708 |
| Acc36I | ACCTGC | 2 cut(s) | 274, 1708 |
| AclWI | GGATC | 1 cut(s) | 1956 |
| AcoI | YGGCCR | 1 cut(s) | 2147 |
| AcsI | RAATTY | 3 cut(s) | 83, 218, 1488 |
| AcuI | CTGAAG | 2 cut(s) | 921, 1767 |
| AfaI | GTAC | 7 cut(s) | 91, 251, 883, 900, 1028, 1159, 1656 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 56, 627, 1237, 1690 |
| AflII | CTTAAG | 4 cut(s) | 581, 683, 1153, 1736 |
| AflIII | ACRYGT | 2 cut(s) | 1105, 1425 |
| AgsI | TTSAA | 8 cut(s) | 27, 65, 608, 677, 1061, 1810, 1911, 2099 |
| AjnI | CCWGG | 1 cut(s) | 38 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 327, 359 |
| AluBI | AGCT | 7 cut(s) | 8, 540, 995, 1087, 1376, 1475, 2300 |
| AluI | AGCT | 7 cut(s) | 8, 540, 995, 1087, 1376, 1475, 2300 |
| Alw21I | GWGCWC | 1 cut(s) | 2302 |
| Alw26I | GTCTC | 1 cut(s) | 636 |
| AlwI | GGATC | 1 cut(s) | 1956 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2260 |
| AoxI | GGCC | 8 cut(s) | 20, 888, 922, 1409, 1710, 2059, 2147, 2176 |
| ApeKI | GCWGC | 7 cut(s) | 1373, 1472, 1510, 1589, 1604, 1919, 2185 |
| ApoI | RAATTY | 3 cut(s) | 83, 218, 1488 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1412, 1444 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1906, 1932 |
| AspLEI | GCGC | 4 cut(s) | 529, 1128, 1230, 1941 |
| AspS9I | GGNCC | 5 cut(s) | 889, 922, 1409, 1711, 2059 |
| AsuC2I | CCSGG | 1 cut(s) | 1714 |
| AsuHPI | GGTGA | 6 cut(s) | 413, 461, 605, 1049, 1953, 2064 |
| AsuNHI | GCTAGC | 1 cut(s) | 529 |
| BaeGI | GKGCMC | 2 cut(s) | 51, 1684 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1141, 1174 |
| BanII | GRGCYC | 2 cut(s) | 2146, 2302 |
| BauI | CACGAG | 1 cut(s) | 1223 |
| BbsI | GAAGAC | 2 cut(s) | 927, 1068 |
| Bbv12I | GWGCWC | 1 cut(s) | 2302 |
| BbvCI | CCTCAGC | 1 cut(s) | 195 |
| BbvI | GCAGC | 7 cut(s) | 1385, 1484, 1497, 1576, 1591, 1906, 2172 |
| BccI | CCATC | 8 cut(s) | 646, 977, 1180, 1342, 1491, 1516, 1831, 1832 |
| BceAI | ACGGC | 2 cut(s) | 2061, 2163 |
| BciT130I | CCWGG | 1 cut(s) | 40 |
| BclI | TGATCA | 2 cut(s) | 418, 624 |
| BcnI | CCSGG | 1 cut(s) | 1714 |
| BcoDI | GTCTC | 1 cut(s) | 636 |
| BfaI | CTAG | 7 cut(s) | 93, 171, 530, 1178, 1476, 1545, 2264 |
| BfmI | CTRYAG | 4 cut(s) | 951, 1470, 1590, 1650 |
| BfoI | RGCGCY | 1 cut(s) | 1231 |
| BfrI | CTTAAG | 4 cut(s) | 581, 683, 1153, 1736 |
| BfuAI | ACCTGC | 2 cut(s) | 274, 1708 |
| BisI | GCNGC | 7 cut(s) | 1374, 1473, 1511, 1590, 1605, 1920, 2186 |
| BlsI | GCNGC | 7 cut(s) | 1375, 1474, 1512, 1591, 1606, 1921, 2187 |
| BmcAI | AGTACT | 3 cut(s) | 91, 883, 1656 |
| Bme1390I | CCNGG | 2 cut(s) | 40, 1714 |
| BmgT120I | GGNCC | 5 cut(s) | 889, 922, 1409, 1711, 2059 |
| BmiI | GGNNCC | 3 cut(s) | 119, 1203, 1410 |
| BmrFI | CCNGG | 2 cut(s) | 40, 1714 |
| BmrI | ACTGGG | 2 cut(s) | 46, 1075 |
| BmsI | GCATC | 2 cut(s) | 1113, 1512 |
| BmtI | GCTAGC | 1 cut(s) | 533 |
| BmuI | ACTGGG | 2 cut(s) | 46, 1075 |
| BpiI | GAAGAC | 2 cut(s) | 927, 1068 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2226, 2258 |
| BpmI | CTGGAG | 1 cut(s) | 2136 |
| Bpu10I | CCTNAGC | 2 cut(s) | 195, 2243 |
| BpuEI | CTTGAG | 4 cut(s) | 817, 923, 1109, 1706 |
| BpuMI | CCSGG | 1 cut(s) | 1714 |
| BsaAI | YACGTR | 1 cut(s) | 1977 |
| BsaJI | CCNNGG | 4 cut(s) | 39, 121, 1584, 2018 |
| BsaWI | WCCGGW | 1 cut(s) | 2152 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 109, 139 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 56, 627, 1237, 1690 |
| Bse118I | RCCGGY | 1 cut(s) | 1128 |
| Bse1I | ACTGG | 3 cut(s) | 52, 1070, 2112 |
| Bse3DI | GCAATG | 2 cut(s) | 956, 1670 |
| BseBI | CCWGG | 1 cut(s) | 40 |
| BseDI | CCNNGG | 4 cut(s) | 39, 121, 1584, 2018 |
| BseGI | GGATG | 4 cut(s) | 242, 439, 617, 2205 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 56, 627, 1237, 1690 |
| BseMI | GCAATG | 2 cut(s) | 956, 1670 |
| BseMII | CTCAG | 5 cut(s) | 186, 801, 1222, 2257, 2315 |
| BseNI | ACTGG | 3 cut(s) | 52, 1070, 2112 |
| BseRI | GAGGAG | 1 cut(s) | 498 |
| BseSI | GKGCMC | 2 cut(s) | 51, 1684 |
| BseXI | GCAGC | 7 cut(s) | 1385, 1484, 1497, 1576, 1591, 1906, 2172 |
| BseYI | CCCAGC | 1 cut(s) | 1196 |
| BsgI | GTGCAG | 1 cut(s) | 774 |
| BshFI | GGCC | 8 cut(s) | 22, 890, 924, 1411, 1712, 2061, 2149, 2178 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2302 |
| BsiSI | CCGG | 3 cut(s) | 1129, 1714, 2153 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 56, 627, 1237, 1690 |
| BsmAI | GTCTC | 1 cut(s) | 636 |
| BsmI | GAATGC | 1 cut(s) | 1567 |
| BsnI | GGCC | 8 cut(s) | 22, 890, 924, 1411, 1712, 2061, 2149, 2178 |
| Bsp1286I | GDGCHC | 4 cut(s) | 51, 1684, 2146, 2302 |
| Bsp143I | GATC | 3 cut(s) | 418, 624, 1948 |
| BspANI | GGCC | 8 cut(s) | 22, 890, 924, 1411, 1712, 2061, 2149, 2178 |
| BspCNI | CTCAG | 5 cut(s) | 187, 802, 1221, 2256, 2314 |
| BspHI | TCATGA | 1 cut(s) | 1831 |
| BspLI | GGNNCC | 3 cut(s) | 119, 1203, 1410 |
| BspMAI | CTGCAG | 2 cut(s) | 1474, 1594 |
| BspMI | ACCTGC | 2 cut(s) | 274, 1708 |
| BspOI | GCTAGC | 1 cut(s) | 533 |
| BspPI | GGATC | 1 cut(s) | 1956 |
| BspTI | CTTAAG | 4 cut(s) | 581, 683, 1153, 1736 |
| BsrDI | GCAATG | 2 cut(s) | 956, 1670 |
| BsrFI | RCCGGY | 1 cut(s) | 1128 |
| BsrI | ACTGG | 3 cut(s) | 52, 1070, 2112 |
| BssAI | RCCGGY | 1 cut(s) | 1128 |
| BssECI | CCNNGG | 4 cut(s) | 39, 121, 1584, 2018 |
| BssMI | GATC | 3 cut(s) | 418, 624, 1948 |
| BssSI | CACGAG | 1 cut(s) | 1223 |
| BssT1I | CCWWGG | 3 cut(s) | 121, 1584, 2018 |
| Bst2BI | CACGAG | 1 cut(s) | 1223 |
| Bst2UI | CCWGG | 1 cut(s) | 40 |
| Bst4CI | ACNGT | 6 cut(s) | 546, 1002, 1267, 1654, 1864, 1907 |
| Bst6I | CTCTTC | 2 cut(s) | 634, 1521 |
| BstAFI | CTTAAG | 4 cut(s) | 581, 683, 1153, 1736 |
| BstBAI | YACGTR | 1 cut(s) | 1977 |
| BstC8I | GCNNGC | 7 cut(s) | 6, 271, 525, 531, 963, 1243, 2025 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1688 |
| BstF5I | GGATG | 4 cut(s) | 242, 439, 617, 2205 |
| BstH2I | RGCGCY | 1 cut(s) | 1231 |
| BstHHI | GCGC | 4 cut(s) | 529, 1128, 1230, 1941 |
| BstKTI | GATC | 3 cut(s) | 421, 627, 1951 |
| BstMAI | GTCTC | 1 cut(s) | 636 |
| BstMBI | GATC | 3 cut(s) | 418, 624, 1948 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 191, 557, 962, 1132, 2297 |
| BstNI | CCWGG | 1 cut(s) | 40 |
| BstNSI | RCATGY | 1 cut(s) | 1429 |
| BstSCI | CCNGG | 2 cut(s) | 38, 1712 |
| BstSFI | CTRYAG | 4 cut(s) | 951, 1470, 1590, 1650 |
| BstSLI | GKGCMC | 2 cut(s) | 51, 1684 |
| BstSNI | TACGTA | 1 cut(s) | 1977 |
| BstV1I | GCAGC | 7 cut(s) | 1385, 1484, 1497, 1576, 1591, 1906, 2172 |
| BstV2I | GAAGAC | 2 cut(s) | 927, 1068 |
| BsuRI | GGCC | 8 cut(s) | 22, 890, 924, 1411, 1712, 2061, 2149, 2178 |
| BtsCI | GGATG | 4 cut(s) | 242, 439, 617, 2205 |
| BtsI | GCAGTG | 2 cut(s) | 51, 762 |
| BtsIMutI | CAGTG | 7 cut(s) | 51, 762, 945, 1791, 1798, 1894, 2105 |
| BveI | ACCTGC | 2 cut(s) | 274, 1708 |
| Cac8I | GCNNGC | 7 cut(s) | 6, 271, 525, 531, 963, 1243, 2025 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2260 |
| CciI | TCATGA | 1 cut(s) | 1831 |
| CfoI | GCGC | 4 cut(s) | 529, 1128, 1230, 1941 |
| Cfr10I | RCCGGY | 1 cut(s) | 1128 |
| Cfr13I | GGNCC | 5 cut(s) | 889, 922, 1409, 1711, 2059 |
| Csp6I | GTAC | 7 cut(s) | 90, 250, 882, 899, 1027, 1158, 1655 |
| CviAII | CATG | 8 cut(s) | 321, 622, 1073, 1334, 1426, 1832, 1942, 2196 |
| CviQI | GTAC | 7 cut(s) | 90, 250, 882, 899, 1027, 1158, 1655 |
| DpnI | GATC | 3 cut(s) | 420, 626, 1950 |
| DpnII | GATC | 3 cut(s) | 418, 624, 1948 |
| DraI | TTTAAA | 1 cut(s) | 1621 |
| EaeI | YGGCCR | 1 cut(s) | 2147 |
| Eam1104I | CTCTTC | 2 cut(s) | 634, 1521 |
| EarI | CTCTTC | 2 cut(s) | 634, 1521 |
| Ecl136II | GAGCTC | 1 cut(s) | 2300 |
| Eco105I | TACGTA | 1 cut(s) | 1977 |
| Eco130I | CCWWGG | 3 cut(s) | 121, 1584, 2018 |
| Eco24I | GRGCYC | 2 cut(s) | 2146, 2302 |
| Eco53kI | GAGCTC | 1 cut(s) | 2300 |
| Eco57I | CTGAAG | 2 cut(s) | 921, 1767 |
| EcoICRI | GAGCTC | 1 cut(s) | 2300 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1688 |
| EcoO109I | RGGNCCY | 3 cut(s) | 889, 922, 2059 |
| EcoRII | CCWGG | 1 cut(s) | 38 |
| EcoT14I | CCWWGG | 3 cut(s) | 121, 1584, 2018 |
| EcoT22I | ATGCAT | 1 cut(s) | 1768 |
| EcoT38I | GRGCYC | 2 cut(s) | 2146, 2302 |
| ErhI | CCWWGG | 3 cut(s) | 121, 1584, 2018 |
| FaeI | CATG | 8 cut(s) | 324, 625, 1076, 1337, 1429, 1835, 1945, 2199 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 281, 313 |
| FatI | CATG | 8 cut(s) | 320, 621, 1072, 1333, 1425, 1831, 1941, 2195 |
| FauNDI | CATATG | 3 cut(s) | 1731, 1924, 2029 |
| FbaI | TGATCA | 2 cut(s) | 418, 624 |
| Fnu4HI | GCNGC | 7 cut(s) | 1374, 1473, 1511, 1590, 1605, 1920, 2186 |
| FokI | GGATG | 4 cut(s) | 249, 446, 604, 2212 |
| FriOI | GRGCYC | 2 cut(s) | 2146, 2302 |
| Fsp4HI | GCNGC | 7 cut(s) | 1374, 1473, 1511, 1590, 1605, 1920, 2186 |
| FspBI | CTAG | 7 cut(s) | 93, 171, 530, 1178, 1476, 1545, 2264 |
| GlaI | GCGC | 4 cut(s) | 528, 1127, 1229, 1940 |
| GluI | GCNGC | 7 cut(s) | 1374, 1473, 1511, 1590, 1605, 1920, 2186 |
| GsaI | CCCAGC | 1 cut(s) | 1200 |
| GsuI | CTGGAG | 1 cut(s) | 2136 |
| HaeII | RGCGCY | 1 cut(s) | 1231 |
| HaeIII | GGCC | 8 cut(s) | 22, 890, 924, 1411, 1712, 2061, 2149, 2178 |
| HapII | CCGG | 3 cut(s) | 1129, 1714, 2153 |
| HhaI | GCGC | 4 cut(s) | 529, 1128, 1230, 1941 |
| Hin1II | CATG | 8 cut(s) | 324, 625, 1076, 1337, 1429, 1835, 1945, 2199 |
| Hin6I | GCGC | 4 cut(s) | 527, 1126, 1228, 1939 |
| HinP1I | GCGC | 4 cut(s) | 527, 1126, 1228, 1939 |
| HindIII | AAGCTT | 1 cut(s) | 6 |
| HinfI | GANTC | 5 cut(s) | 368, 656, 928, 1052, 1851 |
| HpaII | CCGG | 3 cut(s) | 1129, 1714, 2153 |
| HphI | GGTGA | 6 cut(s) | 413, 461, 605, 1049, 1953, 2064 |
| Hpy166II | GTNNAC | 3 cut(s) | 1796, 2015, 2222 |
| Hpy188I | TCNGA | 6 cut(s) | 379, 638, 1019, 1467, 1953, 2304 |
| Hpy188III | TCNNGA | 6 cut(s) | 796, 1612, 1832, 1848, 2115, 2310 |
| Hpy8I | GTNNAC | 3 cut(s) | 1796, 2015, 2222 |
| HpyAV | CCTTC | 8 cut(s) | 33, 392, 614, 809, 913, 1135, 1684, 1939 |
| HpyCH4III | ACNGT | 6 cut(s) | 546, 1002, 1267, 1654, 1864, 1907 |
| HpyCH4IV | ACGT | 2 cut(s) | 1105, 1976 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 191, 557, 962, 1132, 2297 |
| HpySE526I | ACGT | 2 cut(s) | 1105, 1976 |
| Hsp92II | CATG | 8 cut(s) | 324, 625, 1076, 1337, 1429, 1835, 1945, 2199 |
| HspAI | GCGC | 4 cut(s) | 527, 1126, 1228, 1939 |
| Ksp22I | TGATCA | 2 cut(s) | 418, 624 |
| Kzo9I | GATC | 3 cut(s) | 418, 624, 1948 |
| LmnI | GCTCC | 6 cut(s) | 117, 485, 496, 992, 1667, 2297 |
| Lsp1109I | GCAGC | 7 cut(s) | 1385, 1484, 1497, 1576, 1591, 1906, 2172 |
| LweI | GCATC | 2 cut(s) | 1113, 1512 |
| MaeI | CTAG | 7 cut(s) | 93, 171, 530, 1178, 1476, 1545, 2264 |
| MaeII | ACGT | 2 cut(s) | 1105, 1976 |
| MaeIII | GTNAC | 5 cut(s) | 13, 835, 1328, 1867, 1972 |
| MalI | GATC | 3 cut(s) | 420, 626, 1950 |
| MboI | GATC | 3 cut(s) | 418, 624, 1948 |
| MfeI | CAATTG | 1 cut(s) | 342 |
| MhlI | GDGCHC | 4 cut(s) | 51, 1684, 2146, 2302 |
| MlyI | GAGTC | 1 cut(s) | 1061 |
| MmeI | TCCRAC | 1 cut(s) | 1380 |
| Mph1103I | ATGCAT | 1 cut(s) | 1768 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1906, 1932 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1035, 1455, 1775, 1927 |
| MspCI | CTTAAG | 4 cut(s) | 581, 683, 1153, 1736 |
| MspI | CCGG | 3 cut(s) | 1129, 1714, 2153 |
| MspR9I | CCNGG | 2 cut(s) | 40, 1714 |
| MunI | CAATTG | 1 cut(s) | 342 |
| Mva1269I | GAATGC | 1 cut(s) | 1567 |
| MvaI | CCWGG | 1 cut(s) | 40 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 191, 557, 962, 1132, 2297 |
| NciI | CCSGG | 1 cut(s) | 1714 |
| NdeI | CATATG | 3 cut(s) | 1731, 1924, 2029 |
| NdeII | GATC | 3 cut(s) | 418, 624, 1948 |
| NheI | GCTAGC | 1 cut(s) | 529 |
| NlaIII | CATG | 8 cut(s) | 324, 625, 1076, 1337, 1429, 1835, 1945, 2199 |
| NlaIV | GGNNCC | 3 cut(s) | 119, 1203, 1410 |
| NmeAIII | GCCGAG | 1 cut(s) | 2125 |
| NmuCI | GTSAC | 2 cut(s) | 13, 1867 |
| NsiI | ATGCAT | 1 cut(s) | 1768 |
| NspI | RCATGY | 1 cut(s) | 1429 |
| PagI | TCATGA | 1 cut(s) | 1831 |
| PaqCI | CACCTGC | 1 cut(s) | 1708 |
| PciI | ACATGT | 1 cut(s) | 1425 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1860 |
| PctI | GAATGC | 1 cut(s) | 1567 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1906, 1932 |
| PfeI | GAWTC | 4 cut(s) | 368, 656, 928, 1851 |
| PflFI | GACNNNGTC | 1 cut(s) | 791 |
| PkrI | GCNGC | 7 cut(s) | 1375, 1474, 1512, 1591, 1606, 1921, 2187 |
| PleI | GAGTC | 1 cut(s) | 1060 |
| PpsI | GAGTC | 1 cut(s) | 1060 |
| Ppu21I | YACGTR | 1 cut(s) | 1977 |
| PscI | ACATGT | 1 cut(s) | 1425 |
| Psp124BI | GAGCTC | 1 cut(s) | 2302 |
| Psp6I | CCWGG | 1 cut(s) | 38 |
| PspFI | CCCAGC | 1 cut(s) | 1196 |
| PspGI | CCWGG | 1 cut(s) | 38 |
| PspN4I | GGNNCC | 3 cut(s) | 119, 1203, 1410 |
| PspPI | GGNCC | 5 cut(s) | 889, 922, 1409, 1711, 2059 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 561, 593 |
| PstI | CTGCAG | 2 cut(s) | 1474, 1594 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2260 |
| PsyI | GACNNNGTC | 1 cut(s) | 791 |
| RsaI | GTAC | 7 cut(s) | 91, 251, 883, 900, 1028, 1159, 1656 |
| RsaNI | GTAC | 7 cut(s) | 90, 250, 882, 899, 1027, 1158, 1655 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1035, 1455, 1775, 1927 |
| SacI | GAGCTC | 1 cut(s) | 2302 |
| SatI | GCNGC | 7 cut(s) | 1374, 1473, 1511, 1590, 1605, 1920, 2186 |
| Sau3AI | GATC | 3 cut(s) | 418, 624, 1948 |
| Sau96I | GGNCC | 5 cut(s) | 889, 922, 1409, 1711, 2059 |
| ScaI | AGTACT | 3 cut(s) | 91, 883, 1656 |
| SchI | GAGTC | 1 cut(s) | 1061 |
| ScrFI | CCNGG | 2 cut(s) | 40, 1714 |
| SduI | GDGCHC | 4 cut(s) | 51, 1684, 2146, 2302 |
| SfaNI | GCATC | 2 cut(s) | 1113, 1512 |
| SfcI | CTRYAG | 4 cut(s) | 951, 1470, 1590, 1650 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1128 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1035, 1455, 1775, 1927 |
| SmlI | CTYRAG | 8 cut(s) | 581, 683, 796, 902, 1088, 1153, 1685, 1736 |
| SmoI | CTYRAG | 8 cut(s) | 581, 683, 796, 902, 1088, 1153, 1685, 1736 |
| SnaBI | TACGTA | 1 cut(s) | 1977 |
| SspMI | CTAG | 7 cut(s) | 93, 171, 530, 1178, 1476, 1545, 2264 |
| SstI | GAGCTC | 1 cut(s) | 2302 |
| StyD4I | CCNGG | 2 cut(s) | 38, 1712 |
| StyI | CCWWGG | 3 cut(s) | 121, 1584, 2018 |
| TaaI | ACNGT | 6 cut(s) | 546, 1002, 1267, 1654, 1864, 1907 |
| TaiI | ACGT | 2 cut(s) | 1108, 1979 |
| TaqI | TCGA | 3 cut(s) | 222, 713, 1854 |
| TatI | WGTACW | 4 cut(s) | 89, 881, 898, 1654 |
| TfiI | GAWTC | 4 cut(s) | 368, 656, 928, 1851 |
| TscAI | CASTG | 7 cut(s) | 51, 762, 945, 1791, 1798, 1894, 2112 |
| TseFI | GTSAC | 2 cut(s) | 13, 1867 |
| TseI | GCWGC | 7 cut(s) | 1373, 1472, 1510, 1589, 1604, 1919, 2185 |
| Tsp45I | GTSAC | 2 cut(s) | 13, 1867 |
| TspGWI | ACGGA | 3 cut(s) | 921, 1680, 1815 |
| TspRI | CASTG | 7 cut(s) | 51, 762, 945, 1791, 1798, 1894, 2112 |
| Tth111I | GACNNNGTC | 1 cut(s) | 791 |
| Vha464I | CTTAAG | 4 cut(s) | 581, 683, 1153, 1736 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1688 |
| XapI | RAATTY | 3 cut(s) | 83, 218, 1488 |
| XceI | RCATGY | 1 cut(s) | 1429 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1906, 1932 |
| XspI | CTAG | 7 cut(s) | 93, 171, 530, 1178, 1476, 1545, 2264 |
| ZrmI | AGTACT | 3 cut(s) | 91, 883, 1656 |
| Zsp2I | ATGCAT | 1 cut(s) | 1768 |