Rh1DG153700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008783
Physical Location & Seq
Forward (+)
32162026 .. 32171831
9806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG153700.1

Sequence Viewer

Length: 2058 bp
ATGCAAGCTTTAATCACCCTGCCATCTAGAGCTGAAACCTGGATGCTCCCCCAGTTGGGTTCTTGTAAACTTAGTACTCGGAGAAGGAGAAGAAAAAAGATGTGGGGTCTTGCTTTTCCTGTCTGCTATGGTACAACTAGTGCAGTTTTCAAATTTGGTTTTGGATGTGGGAGTGTTTCTAGGTACTCTGAACTTAGACTTGCTAGCAATTGTGAGCTCAACAAGGGCTCTTCTTTTGTGTCGGCTTGGGCTTTGGAGGAACAAGCTATTGGGAATGAGATTAGTGTAGACAAATCGCAACATGGGTTGTTAGGGGAATGTGAGAGCAAGGATGTTGTTGTGGAGGGAATTGAGGAGAGTGAAATTGTTGATGTGCGTGCGCTGGCATCGAGCTTACAGTTTGCGAAAACAGCAGATGATGTGGAAGAGGTTCTGAAGGACAAGGGTAATTTGCCTCTTCAAGTATTCTCATCCATGATCAGGAGTTTTGGAAGAGACAAGTTTATGGATTCCGCGTTTGCTGTTGTTGAATGGCTTAAGAGGAGGAAGGAAGAAACTAATGGTATGATTACCCCAAATTTATTTATCTTTAATAGTCTATTGGGTGCAGTGAAGCAATCTAAACAGTTTGGAGAAATGGATAAAGTCTTGGCTGATATGACGCAGGAAGGGGTGGAACCGAATGTTATAACTTACAATACTATAATGGCAATTTATGTAGAACAAGGACTAAGTAGTAAGGCCCTTGATGTTCTTGAGGATATTCAGAAGAAGGGCTTGATTCCATCTTCAGTGACCTACTCTACAGCATTGCTGGCTTATCAGAGAATGCAAGATGGAGTTGGAGCCTTAGAGTTCTTTGTCAAGGTCAGAGAAAAGTATCGTAATGGTGATATATGTAAAGTTTCAGAAGAAGACTGGGAAAATGAATTTCTAAAGCTCGAGAACTTTACAAAACGTGTTTGCTACCAAGTGATGCGGCGGTGGCTTGTGGTGGATGATAATTTAAGCATCAGTGTGCTAAAACTTCTAGTAAAGATGGATAATGCCGGGGTACCACTTGGTCGGGCAGAGCTTGAGCGCCTTTTGTGGGCCTGTACCCGTGAAGACCATTATAATGTGGCAAAAGAATTGTATAGTAGGATAAGAGAAAGGCATTCTGAAATAAGTCTATCTGTCTGTAATCACGTTATTTGGGTGATGGGAAAGGCTAAGAAATGGTGGGCAGCTTTGGAGATTTATGAGGATATGCTGGACAAGGGGCCAAAGCCAAATAACATGTCATATGAATTGGTAGTATCTCACTTTAATGTTCTTCTGACTGCTGCTAGAAAAAAGGGAATTTGGAGATGGGGTGTCAGGTTGCTCAACAAGATGGAAGAGAAAGGTCTTAAACCAAGAAGTAAGGAATGGAATGCAGTTCTAGTTGCCTGTTCTAAGGCTGCAGAAACTTCTGCTGCTGTTCAGATTTTTAGAAGAATGGTAGAACAAGGTCAAAAACCCACAATCCTTTCTTATGGGGCCTTGCTCAGTGCTCTTGAAAAGGGGAAACTCTATGATGAGGCTCACCAGGTGTGGGAACATATGATCAAGGTTGGTGTAAAACCCAACCTGTATGCGTACACAATCATGGCCTCAGTTTTCAGTGGACAAGGAAAATTTAATTTGGTGGAGACCATTGTTCAAGAGATGGTTTCATCAGGGATTGAGCCAACGGTAGTCACATACAATGCAATTATTAGTGGCTGTGCACGAAATGATTCAAGCAGTGCTGATGCATATGACTGGTTTGATCGGATGAAAGCTAACAATATTCCTCCAAACAATGTTACTTATGAAATGATGATCGAGGCTCTTGCTAAAGAAGGTAAACCAAGGCTTGCATACGAGTTATATTTGAGGGCTCAAAACCAGGGCATTCACCTCTCTGCAAAGGCTTATGATATTTTGGTCCAACCCTCAATGGTTTCTGGAGCTAGTTTTGATCTAAAACTCTTAGGGCCTCGTCCACCTGAGCAGAAAAAGGAAAATTTGCGAGGTAGAAAATCTTCTACCTAA

Protein Analysis

685

Amino Acids

77.3

Weight (kDa)

8.68

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 190 - 241 1.7e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 192 - 236 2.9e-08 PPR repeat family
PPR_3 PF13812 215 - 274 3.2e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 227 - 271 4.8e-11 PPR repeat family
PPR_long PF17177 357 - 512 2.2e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 454 - 513 1.2e-08 Pentatricopeptide repeat domain
PPR_long PF17177 478 - 639 9.4e-13 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 501 - 546 3.6e-08 PPR repeat family
PPR_3 PF13812 527 - 584 5.1e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 548 - 585 1.8e-06 PPR repeat family
PPR_3 PF13812 560 - 619 2.1e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 592 - 621 1.3e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 689, 1116
Acc65I GGTACC 1 cut(s) 1054
AccB1I GGYRCC 1 cut(s) 1054
AccI GTMKAC 1 cut(s) 288
AccII CGCG 1 cut(s) 515
AciI CCGC 3 cut(s) 513, 979, 982
AcsI RAATTY 6 cut(s) 152, 577, 929, 1341, 1658, 2029
AcuI CTGAAG 2 cut(s) 455, 774
AdeI CACNNNGTG 1 cut(s) 1573
AfaI GTAC 6 cut(s) 76, 133, 185, 1056, 1099, 1622
AfiI CCNNNNNNNGG 5 cut(s) 55, 56, 480, 1090, 1576
AflII CTTAAG 1 cut(s) 536
AflIII ACRYGT 2 cut(s) 958, 1278
AgsI TTSAA 6 cut(s) 151, 461, 530, 1541, 1685, 1764
AhlI ACTAGT 1 cut(s) 137
AjnI CCWGG 3 cut(s) 38, 1569, 1911
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
Alw21I GWGCWC 3 cut(s) 219, 1537, 1753
Alw26I GTCTC 2 cut(s) 489, 1667
Alw44I GTGCAC 1 cut(s) 1749
Ama87I CYCGRG 1 cut(s) 941
AoxI GGCC 6 cut(s) 741, 1092, 1262, 1521, 1632, 2000
ApaLI GTGCAC 1 cut(s) 1749
ApeKI GCWGC 4 cut(s) 1226, 1325, 1442, 1457
ApoI RAATTY 6 cut(s) 152, 577, 929, 1341, 1658, 2029
ArsI GACNNNNNNTTYG 2 cut(s) 1265, 1297
Asp700I GAANNNNTTC 3 cut(s) 429, 1759, 2047
Asp718I GGTACC 1 cut(s) 1054
AspLEI GCGC 2 cut(s) 382, 1083
AspS9I GGNCC 6 cut(s) 742, 1092, 1262, 1521, 1951, 2000
AsuC2I CCSGG 1 cut(s) 1051
AsuHPI GGTGA 5 cut(s) 7, 902, 1210, 1559, 1913
AsuNHI GCTAGC 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 941
AvaII GGWCC 1 cut(s) 1951
BaeGI GKGCMC 1 cut(s) 1753
BanI GGYRCC 1 cut(s) 1054
BanII GRGCYC 3 cut(s) 219, 230, 1906
BarI GAAGNNNNNNTAC 1 cut(s) 2032
BbsI GAAGAC 2 cut(s) 921, 1113
Bbv12I GWGCWC 3 cut(s) 219, 1537, 1753
BbvI GCAGC 4 cut(s) 1238, 1312, 1429, 1444
BccI CCATC 8 cut(s) 31, 793, 830, 1033, 1195, 1344, 1369, 1684
BcgI CGANNNNNNTGC 2 cut(s) 1838, 1872
BciT130I CCWGG 3 cut(s) 40, 1571, 1913
BclI TGATCA 2 cut(s) 477, 1587
BcnI CCSGG 1 cut(s) 1051
BcoDI GTCTC 2 cut(s) 489, 1667
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 8 cut(s) 27, 138, 180, 204, 1031, 1329, 1424, 1977
BfmI CTRYAG 2 cut(s) 804, 1443
BfoI RGCGCY 1 cut(s) 1084
BfrI CTTAAG 1 cut(s) 536
BisI GCNGC 5 cut(s) 980, 1227, 1326, 1443, 1458
BlsI GCNGC 5 cut(s) 981, 1228, 1327, 1444, 1459
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 4 cut(s) 40, 1051, 1571, 1913
Bme18I GGWCC 1 cut(s) 1951
BmeT110I CYCGRG 1 cut(s) 941
BmgT120I GGNCC 6 cut(s) 742, 1092, 1262, 1521, 1951, 2000
BmiI GGNNCC 5 cut(s) 678, 847, 1056, 1263, 1522
BmrFI CCNGG 4 cut(s) 40, 1051, 1571, 1913
BmrI ACTGGG 2 cut(s) 46, 928
BmsI GCATC 5 cut(s) 33, 395, 966, 1020, 1765
BmtI GCTAGC 1 cut(s) 207
BmuI ACTGGG 2 cut(s) 46, 928
BpiI GAAGAC 2 cut(s) 921, 1113
BpmI CTGGAG 1 cut(s) 1992
Bpu10I CCTNAGC 1 cut(s) 2013
BpuEI CTTGAG 2 cut(s) 776, 1097
BpuMI CCSGG 1 cut(s) 1051
BsaI GGTCTC 1 cut(s) 1667
BsaJI CCNNGG 3 cut(s) 1050, 1874, 1912
BsaXI ACNNNNNCTCC 2 cut(s) 1339, 1369
Bsc4I CCNNNNNNNGG 5 cut(s) 55, 56, 480, 1090, 1576
Bse1I ACTGG 3 cut(s) 52, 923, 1790
Bse3DI GCAATG 1 cut(s) 809
BseBI CCWGG 3 cut(s) 40, 1571, 1913
BseDI CCNNGG 3 cut(s) 1050, 1874, 1912
BseGI GGATG 6 cut(s) 48, 170, 337, 470, 1003, 1803
BseLI CCNNNNNNNGG 5 cut(s) 55, 56, 480, 1090, 1576
BseMI GCAATG 1 cut(s) 809
BseMII CTCAG 3 cut(s) 1543, 1650, 2004
BseNI ACTGG 3 cut(s) 52, 923, 1790
BseRI GAGGAG 2 cut(s) 368, 556
BseSI GKGCMC 1 cut(s) 1753
BseXI GCAGC 4 cut(s) 1238, 1312, 1429, 1444
BsgI GTGCAG 2 cut(s) 162, 627
Bsh1236I CGCG 1 cut(s) 515
BshFI GGCC 6 cut(s) 743, 1094, 1264, 1523, 1634, 2002
BshNI GGYRCC 1 cut(s) 1054
BsiHKAI GWGCWC 3 cut(s) 219, 1537, 1753
BsiHKCI CYCGRG 1 cut(s) 941
BsiSI CCGG 1 cut(s) 1050
BslI CCNNNNNNNGG 5 cut(s) 55, 56, 480, 1090, 1576
BsmAI GTCTC 2 cut(s) 489, 1667
BsmI GAATGC 4 cut(s) 834, 1156, 1420, 1917
BsnI GGCC 6 cut(s) 743, 1094, 1264, 1523, 1634, 2002
Bso31I GGTCTC 1 cut(s) 1667
BsoBI CYCGRG 1 cut(s) 941
Bsp1286I GDGCHC 5 cut(s) 219, 230, 1537, 1753, 1906
Bsp143I GATC 5 cut(s) 477, 1587, 1792, 1845, 1984
BspACI CCGC 3 cut(s) 513, 979, 982
BspANI GGCC 6 cut(s) 743, 1094, 1264, 1523, 1634, 2002
BspCNI CTCAG 3 cut(s) 1542, 1649, 2005
BspFNI CGCG 1 cut(s) 515
BspLI GGNNCC 5 cut(s) 678, 847, 1056, 1263, 1522
BspMAI CTGCAG 1 cut(s) 1447
BspOI GCTAGC 1 cut(s) 207
BspQI GCTCTTC 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 1054
BspTI CTTAAG 1 cut(s) 536
BspTNI GGTCTC 1 cut(s) 1667
BsrDI GCAATG 1 cut(s) 809
BsrI ACTGG 3 cut(s) 52, 923, 1790
BssECI CCNNGG 3 cut(s) 1050, 1874, 1912
BssMI GATC 5 cut(s) 477, 1587, 1792, 1845, 1984
BssT1I CCWWGG 1 cut(s) 1874
Bst2UI CCWGG 3 cut(s) 40, 1571, 1913
Bst4CI ACNGT 3 cut(s) 399, 627, 1717
Bst6I CTCTTC 5 cut(s) 235, 420, 462, 487, 1374
BstAFI CTTAAG 1 cut(s) 536
BstC8I GCNNGC 6 cut(s) 6, 205, 378, 384, 816, 1881
BstF5I GGATG 6 cut(s) 48, 170, 337, 470, 1003, 1803
BstFNI CGCG 1 cut(s) 515
BstH2I RGCGCY 1 cut(s) 1084
BstHHI GCGC 2 cut(s) 382, 1083
BstKTI GATC 5 cut(s) 480, 1590, 1795, 1848, 1987
BstMAI GTCTC 2 cut(s) 489, 1667
BstMBI GATC 5 cut(s) 477, 1587, 1792, 1845, 1984
BstMWI GCNNNNNNNGC 3 cut(s) 410, 815, 985
BstNI CCWGG 3 cut(s) 40, 1571, 1913
BstNSI RCATGY 1 cut(s) 1282
BstSCI CCNGG 4 cut(s) 38, 1049, 1569, 1911
BstSFI CTRYAG 2 cut(s) 804, 1443
BstSLI GKGCMC 1 cut(s) 1753
BstUI CGCG 1 cut(s) 515
BstV1I GCAGC 4 cut(s) 1238, 1312, 1429, 1444
BstV2I GAAGAC 2 cut(s) 921, 1113
BsuRI GGCC 6 cut(s) 743, 1094, 1264, 1523, 1634, 2002
BtsCI GGATG 6 cut(s) 48, 170, 337, 470, 1003, 1803
BtsI GCAGTG 2 cut(s) 615, 1774
BtsIMutI CAGTG 6 cut(s) 615, 798, 1021, 1537, 1651, 1774
Cac8I GCNNGC 6 cut(s) 6, 205, 378, 384, 816, 1881
CfoI GCGC 2 cut(s) 382, 1083
Cfr13I GGNCC 6 cut(s) 742, 1092, 1262, 1521, 1951, 2000
CseI GACGC 1 cut(s) 670
CsiI ACCWGGT 1 cut(s) 1569
Csp6I GTAC 6 cut(s) 75, 132, 184, 1055, 1098, 1621
CviAII CATG 4 cut(s) 302, 475, 1279, 1630
CviQI GTAC 6 cut(s) 75, 132, 184, 1055, 1098, 1621
DpnI GATC 5 cut(s) 479, 1589, 1794, 1847, 1986
DpnII GATC 5 cut(s) 477, 1587, 1792, 1845, 1984
DraIII CACNNNGTG 1 cut(s) 1573
Eam1104I CTCTTC 5 cut(s) 235, 420, 462, 487, 1374
EarI CTCTTC 5 cut(s) 235, 420, 462, 487, 1374
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 1874
Eco24I GRGCYC 3 cut(s) 219, 230, 1906
Eco31I GGTCTC 1 cut(s) 1667
Eco47I GGWCC 1 cut(s) 1951
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 2 cut(s) 455, 774
Eco88I CYCGRG 1 cut(s) 941
EcoICRI GAGCTC 1 cut(s) 217
EcoO109I RGGNCCY 3 cut(s) 742, 1521, 2000
EcoRII CCWGG 3 cut(s) 38, 1569, 1911
EcoT14I CCWWGG 1 cut(s) 1874
EcoT22I ATGCAT 1 cut(s) 1780
EcoT38I GRGCYC 3 cut(s) 219, 230, 1906
ErhI CCWWGG 1 cut(s) 1874
FaeI CATG 4 cut(s) 305, 478, 1282, 1633
FalI AAGNNNNNCTT 2 cut(s) 761, 793
FatI CATG 4 cut(s) 301, 474, 1278, 1629
FauNDI CATATG 3 cut(s) 1285, 1584, 1780
FbaI TGATCA 2 cut(s) 477, 1587
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 5 cut(s) 980, 1227, 1326, 1443, 1458
FokI GGATG 6 cut(s) 55, 177, 344, 457, 1010, 1810
FriOI GRGCYC 3 cut(s) 219, 230, 1906
Fsp4HI GCNGC 5 cut(s) 980, 1227, 1326, 1443, 1458
FspBI CTAG 8 cut(s) 27, 138, 180, 204, 1031, 1329, 1424, 1977
GlaI GCGC 2 cut(s) 381, 1082
GluI GCNGC 5 cut(s) 980, 1227, 1326, 1443, 1458
GsuI CTGGAG 1 cut(s) 1992
HaeII RGCGCY 1 cut(s) 1084
HaeIII GGCC 6 cut(s) 743, 1094, 1264, 1523, 1634, 2002
HapII CCGG 1 cut(s) 1050
HgaI GACGC 1 cut(s) 670
HhaI GCGC 2 cut(s) 382, 1083
Hin1II CATG 4 cut(s) 305, 478, 1282, 1633
Hin6I GCGC 2 cut(s) 380, 1081
HinP1I GCGC 2 cut(s) 380, 1081
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 3 cut(s) 509, 781, 1760
HpaII CCGG 1 cut(s) 1050
HphI GGTGA 5 cut(s) 7, 902, 1210, 1559, 1913
Hpy166II GTNNAC 7 cut(s) 68, 289, 1623, 1649, 1751, 1871, 2009
Hpy188III TCNNGA 7 cut(s) 27, 481, 755, 943, 1538, 1685, 1971
Hpy8I GTNNAC 7 cut(s) 68, 289, 1623, 1649, 1751, 1871, 2009
HpyAV CCTTC 6 cut(s) 78, 430, 541, 662, 766, 1859
HpyCH4III ACNGT 3 cut(s) 399, 627, 1717
HpyCH4IV ACGT 2 cut(s) 958, 1188
HpyF10VI GCNNNNNNNGC 3 cut(s) 410, 815, 985
HpySE526I ACGT 2 cut(s) 958, 1188
Hsp92II CATG 4 cut(s) 305, 478, 1282, 1633
HspAI GCGC 2 cut(s) 380, 1081
KpnI GGTACC 1 cut(s) 1058
Ksp22I TGATCA 2 cut(s) 477, 1587
Kzo9I GATC 5 cut(s) 477, 1587, 1792, 1845, 1984
LguI GCTCTTC 1 cut(s) 235
LmnI GCTCC 3 cut(s) 51, 845, 1973
Lsp1109I GCAGC 4 cut(s) 1238, 1312, 1429, 1444
LweI GCATC 5 cut(s) 33, 395, 966, 1020, 1765
MabI ACCWGGT 1 cut(s) 1569
MaeI CTAG 8 cut(s) 27, 138, 180, 204, 1031, 1329, 1424, 1977
MaeII ACGT 2 cut(s) 958, 1188
MaeIII GTNAC 3 cut(s) 793, 1720, 1828
MalI GATC 5 cut(s) 479, 1589, 1794, 1847, 1986
MboI GATC 5 cut(s) 477, 1587, 1792, 1845, 1984
MfeI CAATTG 1 cut(s) 208
MhlI GDGCHC 5 cut(s) 219, 230, 1537, 1753, 1906
MmeI TCCRAC 2 cut(s) 823, 1978
Mph1103I ATGCAT 1 cut(s) 1780
MroXI GAANNNNTTC 3 cut(s) 429, 1759, 2047
MseI TTAA 7 cut(s) 11, 537, 591, 1007, 1308, 1392, 1662
MslI CAYNNNNRTG 4 cut(s) 1016, 1116, 1308, 1628
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 1 cut(s) 1050
MspR9I CCNGG 4 cut(s) 40, 1051, 1571, 1913
MunI CAATTG 1 cut(s) 208
Mva1269I GAATGC 4 cut(s) 834, 1156, 1420, 1917
MvaI CCWGG 3 cut(s) 40, 1571, 1913
MvnI CGCG 1 cut(s) 515
MwoI GCNNNNNNNGC 3 cut(s) 410, 815, 985
NciI CCSGG 1 cut(s) 1051
NdeI CATATG 3 cut(s) 1285, 1584, 1780
NdeII GATC 5 cut(s) 477, 1587, 1792, 1845, 1984
NheI GCTAGC 1 cut(s) 203
NlaIII CATG 4 cut(s) 305, 478, 1282, 1633
NlaIV GGNNCC 5 cut(s) 678, 847, 1056, 1263, 1522
NmuCI GTSAC 2 cut(s) 793, 1720
NsiI ATGCAT 1 cut(s) 1780
NspI RCATGY 1 cut(s) 1282
PaeR7I CTCGAG 1 cut(s) 941
PciI ACATGT 1 cut(s) 1278
PciSI GCTCTTC 1 cut(s) 235
PctI GAATGC 4 cut(s) 834, 1156, 1420, 1917
PdmI GAANNNNTTC 3 cut(s) 429, 1759, 2047
PfeI GAWTC 3 cut(s) 509, 781, 1760
PkrI GCNGC 5 cut(s) 981, 1228, 1327, 1444, 1459
PscI ACATGT 1 cut(s) 1278
PsiI TTATAA 2 cut(s) 689, 1116
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 3 cut(s) 38, 1569, 1911
PspGI CCWGG 3 cut(s) 38, 1569, 1911
PspN4I GGNNCC 5 cut(s) 678, 847, 1056, 1263, 1522
PspPI GGNCC 6 cut(s) 742, 1092, 1262, 1521, 1951, 2000
PstI CTGCAG 1 cut(s) 1447
RsaI GTAC 6 cut(s) 76, 133, 185, 1056, 1099, 1622
RsaNI GTAC 6 cut(s) 75, 132, 184, 1055, 1098, 1621
RseI CAYNNNNRTG 4 cut(s) 1016, 1116, 1308, 1628
SacI GAGCTC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 235
SaqAI TTAA 7 cut(s) 11, 537, 591, 1007, 1308, 1392, 1662
SatI GCNGC 5 cut(s) 980, 1227, 1326, 1443, 1458
Sau3AI GATC 5 cut(s) 477, 1587, 1792, 1845, 1984
Sau96I GGNCC 6 cut(s) 742, 1092, 1262, 1521, 1951, 2000
ScaI AGTACT 1 cut(s) 76
ScrFI CCNGG 4 cut(s) 40, 1051, 1571, 1913
SduI GDGCHC 5 cut(s) 219, 230, 1537, 1753, 1906
SexAI ACCWGGT 1 cut(s) 1569
SfaNI GCATC 5 cut(s) 33, 395, 966, 1020, 1765
SfcI CTRYAG 2 cut(s) 804, 1443
Sfr274I CTCGAG 1 cut(s) 941
SinI GGWCC 1 cut(s) 1951
SlaI CTCGAG 1 cut(s) 941
SmiMI CAYNNNNRTG 4 cut(s) 1016, 1116, 1308, 1628
SmlI CTYRAG 4 cut(s) 536, 755, 941, 1076
SmoI CTYRAG 4 cut(s) 536, 755, 941, 1076
SpeI ACTAGT 1 cut(s) 137
SsiI CCGC 3 cut(s) 513, 979, 982
SspI AATATT 1 cut(s) 1813
SspMI CTAG 8 cut(s) 27, 138, 180, 204, 1031, 1329, 1424, 1977
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 4 cut(s) 38, 1049, 1569, 1911
StyI CCWWGG 1 cut(s) 1874
TaaI ACNGT 3 cut(s) 399, 627, 1717
TaiI ACGT 2 cut(s) 961, 1191
TaqI TCGA 3 cut(s) 389, 942, 1848
TatI WGTACW 1 cut(s) 74
TauI GCSGC 1 cut(s) 982
TfiI GAWTC 3 cut(s) 509, 781, 1760
Tru1I TTAA 7 cut(s) 11, 537, 591, 1007, 1308, 1392, 1662
Tru9I TTAA 7 cut(s) 11, 537, 591, 1007, 1308, 1392, 1662
TscAI CASTG 6 cut(s) 615, 798, 1021, 1537, 1651, 1774
TseFI GTSAC 2 cut(s) 793, 1720
TseI GCWGC 4 cut(s) 1226, 1325, 1442, 1457
Tsp45I GTSAC 2 cut(s) 793, 1720
TspDTI ATGAA 5 cut(s) 942, 1302, 1686, 1814, 1851
TspRI CASTG 6 cut(s) 615, 798, 1021, 1537, 1651, 1774
Vha464I CTTAAG 1 cut(s) 536
VneI GTGCAC 1 cut(s) 1749
VpaK11BI GGWCC 1 cut(s) 1951
XapI RAATTY 6 cut(s) 152, 577, 929, 1341, 1658, 2029
XbaI TCTAGA 1 cut(s) 26
XceI RCATGY 1 cut(s) 1282
XhoI CTCGAG 1 cut(s) 941
XmiI GTMKAC 1 cut(s) 288
XmnI GAANNNNTTC 3 cut(s) 429, 1759, 2047
XspI CTAG 8 cut(s) 27, 138, 180, 204, 1031, 1329, 1424, 1977
ZrmI AGTACT 1 cut(s) 76
Zsp2I ATGCAT 1 cut(s) 1780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.