Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008783

Physical Location & Seq

Genomic Coordinates Reverse (-)

1524925 .. 1528752

Gene Structure 3828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1020100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGCAAGCTTTAATCACTTGGGATGTACCCCAGGTGGGATTTGAATTTGGTCCTTCTTGTAAATTTAGAACTAGGAGTAGGAGAAAAAATATTGTTGTTGGTTTTCCTGTTTGTAATGGAGGAAATGCTGATGTTTTACTTGGGAGTGAGGGCTTCAATGGAGGCCGAAAATTTGGTTTCGGATGTGGTTGCTTCTCTGGGCACTCTAGACCTAAACTTGCTCGGTTTTGTGAGCCGAACAAGGGTTCATTTGGCGGTTCTTTTGTGGTAGCATGGGCATTGGAGGAGCAAGCAATTGGGAATGAGGTTGTTGTGGAGGAATCGACCTCGGAACATAGGTTTTCAGGTGAATGCGAGAGTGAGGGTGGTGTTGATCATCGAAATGTGGATGGAAGGAATGGCGGTGATGGTAATGATAGTGATGAAGTAGGGGTAGGCGGTCAAGGATGTGATTGGGAACAGAGAAATGAAAAGATTGACGTGCGTGCACTGGCGCTGAGCTTACAGTTTGCGAAAACAGCTGATGATGTTGAAGAGGTTCTTAAGGACAAGGGTGATTTGCCCCTTCAAGTATTCTCATCGATCATTAGGGGTTTCGGAAGAGACAGACTGATGGATTCTGCTTTTGCTACTGTCGAATGGCTTAAGAGGAAGAAGGAAGAAACTAATGGTTTTATTGCCCCAAACTTATTCATATATAACAGTCTTTTGGGTGCAGTGAAGCAATCTGGACAATTCGGAGAAATGGACAGAGTCTTGAATGATATGGCTAGGGAAGGGGTGGCGCCGAATGTTGTAACTTACAACACTAAAATGGCGATTTACATTGATCGAGGACTAAGTACGGAGGCCCTTCATGTTCTTGAGGAGATTCAAGAAAAAGGCATGACTCCATCTCCCGTATCGTATTCCACAGCATTGTTGGCTTATCAAAGAATGCAAGACGGGAATGGAGCTTTAAAGTTCTTTGTTGATTTTAGAGAAAAGTATCGTAAAGGTCATATAGGTAAAGATGCTGATGTAGACTGGGAACAAGAGTTTGTGAAGCTTGAGAACTTTACAAAACGCGTTTGCTACCAAGTGATGCGGCGGTGGCTTGTGAGGGATGATAACTTAACAACCAAAGTGCTAAAACTGCTAACAGAGATGGATATTGCTGAGGTTCCACTTGGAAGGGCGGAGCACGAGCGCCTTTTGTGGGCTTGTACCCGTGAAGAACATTATATTGTAGCTAAAGATTTGTATAGTAGGATAAGAGAAAAGCATTCTGACATAAGTCTAGCCGTGTGTAACCATACAATTTGGTTGATGGGGAAGGCTAAGAAATGGTGGGCAGCTTTGGAGATTTATGAGGATATGTTGGACAAGGGGCCACAACCAAATAATATGTCGTATGAATTGATAGTATCTCACTTTAATGTTCTTCTAAGTGCAGCTAGAAAAAGAGCAATTTGGAAATGGGGTGTCAGGTTGCTCAACAAGATGGAAGAGAAAGGACTTAAACCGAGAAGTAAGGAATGGAATGCAGTTCTTGTTGCCTGTTCCAAGGCGGCTGAAACTTCTGCTGCTATCAAAATTTTCAAGAGAATGGTGGAGCAAGGTCAGAAACCCACAATCCTTTCTTACGGGGCATTGCTTAGTGCCCTTGAGAAGGGAAAGCGATATGATGAGGCCCGTCAGGTGTGGGAACATATGCTTAAGGTTGGTCTGAAACCAAACTTGTACGCCTACACAACTATGGCTTCGATTTTCAGTGGCCATGGAAAACCTAACATGGTAGAAACCATCATCAATGACATGGTTTCAGCAGGTGTTGAGCCAACTGTTGTCACATACAATGCCATTATCAGTGGGTTTGCAAGAAACGGTTTTAGCAGTGCTGCATACGAATGGTTTGACTGCATGAAAGCTCAGAACATCCCTCCAAACCATGTCACATACGAAATGTTGATTGAGGCTCTTGCAAACGAAGGGAAGCCGAGACTTGCATATGAGCTATATTTGAGAGCTCAAACTCAGCGCCTTGCCCTCTCTTCAAAAGCTTATGACACAGTGGTTCAGTCCTCACTGGAATCCGGAGCTAACATTGATGTAAGACTCTTAGGCGAACGGCCACCAGAGAGAAAGGGGAATGTGCAAGATAGAAACACTTCCAGCCAAGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

723

Amino Acids

81.04

Weight (kDa)

7.19

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	226 - 276	4.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	228 - 270	3.8e-09	PPR repeat family
PPR_3	PF13812	251 - 310	6.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	263 - 307	2e-07	PPR repeat family
PPR_long	PF17177	396 - 548	2.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	490 - 549	7.6e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	514 - 682	1.5e-14	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	537 - 581	1e-07	PPR repeat family
PPR_2	PF13041	584 - 621	1.9e-06	PPR repeat family
PPR_3	PF13812	596 - 656	5.3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	604 - 636	1.1e-07	PPR repeat
PPR_2	PF13041	607 - 656	1.7e-13	PPR repeat family
PPR	PF01535	610 - 639	1.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46610 AT3G46610
fragaria_vesca	FvH4_7g06820 FvH4_7g06820 FvH4_7g06820
malus_domestica	MD09G1019500.v1.1 MD17G1020100.v1.1
prunus_persica	Prupe.2G095300_v2.0.a1 Prupe.2G095300_v2.0.a1
pyrus_communis	pycom111g01620
rosa_chinensis	RchiOBHm_Chr1g0336521
rosa_laevigata	RLG00000029357
rosa_multiflora	Rmu_sc0001981.1_g000003 Rmu_sc0005044.1_g000026 Rmu_sc0009324.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315530
rosa_rugosa	Rorug01G0125900
rosa_samantha	Rh1AG147000 Rh1BG115100 Rh1CG138300 Rh1DG153700
rosa_wichuraiana	Rw1G009520 Rw1G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1799
Acc36I	ACCTGC	1 cut(s)	1799
AccB1I	GGYRCC	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	1023
AccII	CGCG	1 cut(s)	1068
AccIII	TCCGGA	1 cut(s)	2075
AciI	CCGC	7 cut(s)	255, 402, 438, 1087, 1090, 1178, 1550
AcoI	YGGCCR	2 cut(s)	1756, 2111
AcsI	RAATTY	4 cut(s)	44, 62, 170, 1575
AcyI	GRCGYC	1 cut(s)	785
AfaI	GTAC	4 cut(s)	27, 844, 1207, 1724
AfiI	CCNNNNNNNGG	4 cut(s)	35, 242, 1198, 1651
AflII	CTTAAG	3 cut(s)	542, 644, 1697
AflIII	ACRYGT	1 cut(s)	1066
AgsI	TTSAA	8 cut(s)	44, 157, 533, 569, 760, 875, 1582, 2037
AjiI	CACGTC	1 cut(s)	481
AjnI	CCWGG	1 cut(s)	30
Alw21I	GWGCWC	3 cut(s)	490, 1185, 2011
Alw26I	GTCTC	2 cut(s)	597, 1975
Alw44I	GTGCAC	1 cut(s)	486
Aor13HI	TCCGGA	1 cut(s)	2075
AoxI	GGCC	6 cut(s)	163, 849, 1370, 1671, 1756, 2111
ApaLI	GTGCAC	1 cut(s)	486
ApeKI	GCWGC	4 cut(s)	1334, 1433, 1565, 1880
ApoI	RAATTY	4 cut(s)	44, 62, 170, 1575
ArsI	GACNNNNNNTTYG	2 cut(s)	1373, 1405
Asp700I	GAANNNNTTC	2 cut(s)	537, 2149
AspLEI	GCGC	4 cut(s)	496, 787, 1191, 2022
AspS9I	GGNCC	4 cut(s)	50, 850, 1370, 1672
AsuHPI	GGTGA	3 cut(s)	359, 416, 566
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	3 cut(s)	204, 490, 1645
BalI	TGGCCA	1 cut(s)	1758
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	2011
BauI	CACGAG	1 cut(s)	1184
Bbv12I	GWGCWC	3 cut(s)	490, 1185, 2011
BbvCI	CCTCAGC	1 cut(s)	1158
BbvI	GCAGC	4 cut(s)	1346, 1445, 1552, 1867
BccI	CCATC	8 cut(s)	383, 401, 607, 901, 1141, 1303, 1477, 1793
BceAI	ACGGC	2 cut(s)	1268, 2126
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	597, 1975
BfaI	CTAG	5 cut(s)	72, 207, 771, 1280, 1437
BfoI	RGCGCY	4 cut(s)	497, 788, 1192, 2023
BfrI	CTTAAG	3 cut(s)	542, 644, 1697
BfuAI	ACCTGC	1 cut(s)	1799
BisI	GCNGC	6 cut(s)	1088, 1335, 1434, 1551, 1566, 1881
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	6 cut(s)	1089, 1336, 1435, 1552, 1567, 1882
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	481
BmgT120I	GGNCC	4 cut(s)	50, 850, 1370, 1672
BmiI	GGNNCC	3 cut(s)	786, 1164, 1371
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	1036
BmsI	GCATC	2 cut(s)	1003, 1074
BmuI	ACTGGG	1 cut(s)	1036
BoxI	GACNNNNGTC	1 cut(s)	1275
Bpu10I	CCTNAGC	1 cut(s)	1158
Bpu1102I	GCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	3 cut(s)	884, 1070, 1667
Bsa29I	ATCGAT	1 cut(s)	581
BsaHI	GRCGYC	1 cut(s)	785
BsaJI	CCNNGG	4 cut(s)	30, 327, 1545, 1759
BsaWI	WCCGGW	1 cut(s)	2075
BsaXI	ACNNNNNCTCC	2 cut(s)	880, 910
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 242, 1198, 1651
Bse1I	ACTGG	3 cut(s)	495, 1031, 2073
Bse3DI	GCAATG	1 cut(s)	1631
BseAI	TCCGGA	1 cut(s)	2075
BseBI	CCWGG	1 cut(s)	32
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	4 cut(s)	30, 327, 1545, 1759
BseGI	GGATG	6 cut(s)	28, 188, 394, 452, 1111, 1917
BseLI	CCNNNNNNNGG	4 cut(s)	35, 242, 1198, 1651
BseMI	GCAATG	1 cut(s)	1631
BseMII	CTCAG	4 cut(s)	488, 1149, 1925, 2030
BseNI	ACTGG	3 cut(s)	495, 1031, 2073
BseRI	GAGGAG	2 cut(s)	299, 881
BseSI	GKGCMC	3 cut(s)	204, 490, 1645
BseXI	GCAGC	4 cut(s)	1346, 1445, 1552, 1867
BsgI	GTGCAG	2 cut(s)	735, 1452
Bsh1236I	CGCG	1 cut(s)	1068
BshFI	GGCC	6 cut(s)	165, 851, 1372, 1673, 1758, 2113
BshNI	GGYRCC	1 cut(s)	784
BshVI	ATCGAT	1 cut(s)	581
BsiHKAI	GWGCWC	3 cut(s)	490, 1185, 2011
BsiSI	CCGG	1 cut(s)	2076
BslI	CCNNNNNNNGG	4 cut(s)	35, 242, 1198, 1651
BsmAI	GTCTC	2 cut(s)	597, 1975
BsmI	GAATGC	4 cut(s)	356, 942, 1264, 1528
BsnI	GGCC	6 cut(s)	165, 851, 1372, 1673, 1758, 2113
Bsp1286I	GDGCHC	5 cut(s)	204, 490, 1185, 1645, 2011
Bsp13I	TCCGGA	1 cut(s)	2075
Bsp143I	GATC	3 cut(s)	373, 582, 829
Bsp1720I	GCTNAGC	1 cut(s)	497
Bsp19I	CCATGG	1 cut(s)	1759
BspACI	CCGC	7 cut(s)	255, 402, 438, 1087, 1090, 1178, 1550
BspANI	GGCC	6 cut(s)	165, 851, 1372, 1673, 1758, 2113
BspCNI	CTCAG	4 cut(s)	489, 1150, 1924, 2029
BspDI	ATCGAT	1 cut(s)	581
BspEI	TCCGGA	1 cut(s)	2075
BspFNI	CGCG	1 cut(s)	1068
BspLI	GGNNCC	3 cut(s)	786, 1164, 1371
BspMI	ACCTGC	1 cut(s)	1799
BspT107I	GGYRCC	1 cut(s)	784
BspTI	CTTAAG	3 cut(s)	542, 644, 1697
BsrDI	GCAATG	1 cut(s)	1631
BsrI	ACTGG	3 cut(s)	495, 1031, 2073
BssECI	CCNNGG	4 cut(s)	30, 327, 1545, 1759
BssMI	GATC	3 cut(s)	373, 582, 829
BssNI	GRCGYC	1 cut(s)	785
BssSI	CACGAG	1 cut(s)	1184
BssT1I	CCWWGG	2 cut(s)	1545, 1759
Bst2BI	CACGAG	1 cut(s)	1184
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	6 cut(s)	507, 634, 704, 1825, 1868, 2053
Bst6I	CTCTTC	4 cut(s)	528, 595, 1482, 2038
BstACI	GRCGYC	1 cut(s)	785
BstAFI	CTTAAG	3 cut(s)	542, 644, 1697
BstC8I	GCNNGC	3 cut(s)	6, 291, 486
BstDEI	CTNAG	9 cut(s)	497, 839, 1158, 1320, 1427, 1637, 1911, 2016, 2101
BstDSI	CCRYGG	1 cut(s)	1759
BstENI	CCTNNNNNAGG	1 cut(s)	1649
BstF5I	GGATG	6 cut(s)	28, 188, 394, 452, 1111, 1917
BstFNI	CGCG	1 cut(s)	1068
BstH2I	RGCGCY	4 cut(s)	497, 788, 1192, 2023
BstHHI	GCGC	4 cut(s)	496, 787, 1191, 2022
BstKTI	GATC	3 cut(s)	376, 585, 832
BstMAI	GTCTC	2 cut(s)	597, 1975
BstMBI	GATC	3 cut(s)	373, 582, 829
BstMWI	GCNNNNNNNGC	4 cut(s)	518, 923, 1093, 1135
BstNI	CCWGG	1 cut(s)	32
BstPAI	GACNNNNGTC	1 cut(s)	1275
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	3 cut(s)	204, 490, 1645
BstUI	CGCG	1 cut(s)	1068
BstV1I	GCAGC	4 cut(s)	1346, 1445, 1552, 1867
Bsu15I	ATCGAT	1 cut(s)	581
BsuRI	GGCC	6 cut(s)	165, 851, 1372, 1673, 1758, 2113
BsuTUI	ATCGAT	1 cut(s)	581
BtgI	CCRYGG	1 cut(s)	1759
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	6 cut(s)	28, 188, 394, 452, 1111, 1917
BtsI	GCAGTG	2 cut(s)	723, 1882
BtsIMutI	CAGTG	7 cut(s)	488, 723, 1759, 1855, 1882, 2058, 2066
BveI	ACCTGC	1 cut(s)	1799
Cac8I	GCNNGC	3 cut(s)	6, 291, 486
CfoI	GCGC	4 cut(s)	496, 787, 1191, 2022
Cfr13I	GGNCC	4 cut(s)	50, 850, 1370, 1672
ClaI	ATCGAT	1 cut(s)	581
Csp6I	GTAC	4 cut(s)	26, 843, 1206, 1723
CviAII	CATG	8 cut(s)	273, 857, 886, 1760, 1774, 1798, 1903, 1931
CviQI	GTAC	4 cut(s)	26, 843, 1206, 1723
DdeI	CTNAG	9 cut(s)	497, 839, 1158, 1320, 1427, 1637, 1911, 2016, 2101
DinI	GGCGCC	1 cut(s)	786
DpnI	GATC	3 cut(s)	375, 584, 831
DpnII	GATC	3 cut(s)	373, 582, 829
DraI	TTTAAA	1 cut(s)	960
EaeI	YGGCCR	2 cut(s)	1756, 2111
Eam1104I	CTCTTC	4 cut(s)	528, 595, 1482, 2038
EarI	CTCTTC	4 cut(s)	528, 595, 1482, 2038
EciI	GGCGGA	1 cut(s)	1193
Ecl136II	GAGCTC	1 cut(s)	2009
Eco130I	CCWWGG	2 cut(s)	1545, 1759
Eco24I	GRGCYC	1 cut(s)	2011
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	2009
EcoICRI	GAGCTC	1 cut(s)	2009
EcoNI	CCTNNNNNAGG	1 cut(s)	1649
EcoO109I	RGGNCCY	1 cut(s)	850
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	1545, 1759
EcoT38I	GRGCYC	1 cut(s)	2011
EgeI	GGCGCC	1 cut(s)	786
EheI	GGCGCC	1 cut(s)	786
ErhI	CCWWGG	2 cut(s)	1545, 1759
FaeI	CATG	8 cut(s)	276, 860, 889, 1763, 1777, 1801, 1906, 1934
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	8 cut(s)	272, 856, 885, 1759, 1773, 1797, 1902, 1930
FauNDI	CATATG	2 cut(s)	1692, 1990
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	1023
Fnu4HI	GCNGC	6 cut(s)	1088, 1335, 1434, 1551, 1566, 1881
FokI	GGATG	6 cut(s)	35, 195, 401, 459, 1118, 1904
FriOI	GRGCYC	1 cut(s)	2011
Fsp4HI	GCNGC	6 cut(s)	1088, 1335, 1434, 1551, 1566, 1881
FspBI	CTAG	5 cut(s)	72, 207, 771, 1280, 1437
GlaI	GCGC	4 cut(s)	495, 786, 1190, 2021
GluI	GCNGC	6 cut(s)	1088, 1335, 1434, 1551, 1566, 1881
HaeII	RGCGCY	4 cut(s)	497, 788, 1192, 2023
HaeIII	GGCC	6 cut(s)	165, 851, 1372, 1673, 1758, 2113
HapII	CCGG	1 cut(s)	2076
HhaI	GCGC	4 cut(s)	496, 787, 1191, 2022
Hin1I	GRCGYC	1 cut(s)	785
Hin1II	CATG	8 cut(s)	276, 860, 889, 1763, 1777, 1801, 1906, 1934
Hin6I	GCGC	4 cut(s)	494, 785, 1189, 2020
HinP1I	GCGC	4 cut(s)	494, 785, 1189, 2020
HindIII	AAGCTT	3 cut(s)	6, 1046, 2040
HinfI	GANTC	7 cut(s)	320, 617, 753, 871, 889, 2072, 2097
HpaII	CCGG	1 cut(s)	2076
HphI	GGTGA	3 cut(s)	359, 416, 566
Hpy166II	GTNNAC	2 cut(s)	488, 1024
Hpy188I	TCNGA	8 cut(s)	182, 331, 599, 740, 1270, 1605, 1710, 1914
Hpy188III	TCNNGA	7 cut(s)	207, 729, 757, 863, 875, 1582, 2076
Hpy8I	GTNNAC	2 cut(s)	488, 1024
HpyCH4III	ACNGT	6 cut(s)	507, 634, 704, 1825, 1868, 2053
HpyCH4IV	ACGT	1 cut(s)	480
HpyF10VI	GCNNNNNNNGC	4 cut(s)	518, 923, 1093, 1135
HpyF3I	CTNAG	9 cut(s)	497, 839, 1158, 1320, 1427, 1637, 1911, 2016, 2101
HpySE526I	ACGT	1 cut(s)	480
Hsp92I	GRCGYC	1 cut(s)	785
Hsp92II	CATG	8 cut(s)	276, 860, 889, 1763, 1777, 1801, 1906, 1934
HspAI	GCGC	4 cut(s)	494, 785, 1189, 2020
KasI	GGCGCC	1 cut(s)	784
Kpn2I	TCCGGA	1 cut(s)	2075
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	373, 582, 829
LmnI	GCTCC	5 cut(s)	286, 953, 1180, 1594, 2078
Lsp1109I	GCAGC	4 cut(s)	1346, 1445, 1552, 1867
LweI	GCATC	2 cut(s)	1003, 1074
MaeI	CTAG	5 cut(s)	72, 207, 771, 1280, 1437
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	4 cut(s)	796, 1289, 1828, 1933
MalI	GATC	3 cut(s)	375, 584, 831
MboI	GATC	3 cut(s)	373, 582, 829
MboII	GAAGA	8 cut(s)	545, 612, 664, 671, 1226, 1415, 1499, 2025
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	5 cut(s)	204, 490, 1185, 1645, 2011
MlsI	TGGCCA	1 cut(s)	1758
MluCI	AATT	9 cut(s)	44, 62, 170, 294, 734, 1299, 1397, 1449, 1575
MluI	ACGCGT	1 cut(s)	1066
MluNI	TGGCCA	1 cut(s)	1758
Mly113I	GGCGCC	1 cut(s)	785
MlyI	GAGTC	3 cut(s)	762, 883, 2091
MmeI	TCCRAC	1 cut(s)	1341
Mox20I	TGGCCA	1 cut(s)	1758
MroI	TCCGGA	1 cut(s)	2075
MroXI	GAANNNNTTC	2 cut(s)	537, 2149
MscI	TGGCCA	1 cut(s)	1758
MseI	TTAA	9 cut(s)	11, 543, 645, 959, 1115, 1416, 1500, 1698, 2167
MslI	CAYNNNNRTG	5 cut(s)	381, 812, 1416, 1736, 1888
Msp20I	TGGCCA	1 cut(s)	1758
MspA1I	CMGCKG	1 cut(s)	521
MspCI	CTTAAG	3 cut(s)	542, 644, 1697
MspI	CCGG	1 cut(s)	2076
MspR9I	CCNGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	294
Mva1269I	GAATGC	4 cut(s)	356, 942, 1264, 1528
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	1068
MwoI	GCNNNNNNNGC	4 cut(s)	518, 923, 1093, 1135
NarI	GGCGCC	1 cut(s)	785
NcoI	CCATGG	1 cut(s)	1759
NdeI	CATATG	2 cut(s)	1692, 1990
NdeII	GATC	3 cut(s)	373, 582, 829
NlaIII	CATG	8 cut(s)	276, 860, 889, 1763, 1777, 1801, 1906, 1934
NlaIV	GGNNCC	3 cut(s)	786, 1164, 1371
NmeAIII	GCCGAG	1 cut(s)	2004
NmuCI	GTSAC	2 cut(s)	1828, 1933
PaqCI	CACCTGC	1 cut(s)	1799
PctI	GAATGC	4 cut(s)	356, 942, 1264, 1528
PdmI	GAANNNNTTC	2 cut(s)	537, 2149
PfeI	GAWTC	4 cut(s)	320, 617, 871, 2072
PflFI	GACNNNGTC	1 cut(s)	752
PkrI	GCNGC	6 cut(s)	1089, 1336, 1435, 1552, 1567, 1882
PleI	GAGTC	3 cut(s)	761, 883, 2091
PluTI	GGCGCC	1 cut(s)	788
PpsI	GAGTC	3 cut(s)	761, 883, 2091
PshAI	GACNNNNGTC	1 cut(s)	1275
Psp124BI	GAGCTC	1 cut(s)	2011
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	786, 1164, 1371
PspPI	GGNCC	4 cut(s)	50, 850, 1370, 1672
PsyI	GACNNNGTC	1 cut(s)	752
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	4 cut(s)	27, 844, 1207, 1724
RsaNI	GTAC	4 cut(s)	26, 843, 1206, 1723
RseI	CAYNNNNRTG	5 cut(s)	381, 812, 1416, 1736, 1888
SacI	GAGCTC	1 cut(s)	2011
SaqAI	TTAA	9 cut(s)	11, 543, 645, 959, 1115, 1416, 1500, 1698, 2167
SatI	GCNGC	6 cut(s)	1088, 1335, 1434, 1551, 1566, 1881
Sau3AI	GATC	3 cut(s)	373, 582, 829
Sau96I	GGNCC	4 cut(s)	50, 850, 1370, 1672
SchI	GAGTC	3 cut(s)	762, 883, 2091
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	5 cut(s)	204, 490, 1185, 1645, 2011
SfaNI	GCATC	2 cut(s)	1003, 1074
SfoI	GGCGCC	1 cut(s)	786
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	5 cut(s)	381, 812, 1416, 1736, 1888
SmlI	CTYRAG	6 cut(s)	542, 644, 863, 1049, 1646, 1697
SmoI	CTYRAG	6 cut(s)	542, 644, 863, 1049, 1646, 1697
Sse9I	AATT	9 cut(s)	44, 62, 170, 294, 734, 1299, 1397, 1449, 1575
SsiI	CCGC	7 cut(s)	255, 402, 438, 1087, 1090, 1178, 1550
SspDI	GGCGCC	1 cut(s)	784
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	5 cut(s)	72, 207, 771, 1280, 1437
SstI	GAGCTC	1 cut(s)	2011
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	1545, 1759
TaaI	ACNGT	6 cut(s)	507, 634, 704, 1825, 1868, 2053
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	6 cut(s)	323, 379, 581, 636, 832, 1745
TasI	AATT	9 cut(s)	44, 62, 170, 294, 734, 1299, 1397, 1449, 1575
TauI	GCSGC	2 cut(s)	1090, 1553
TfiI	GAWTC	4 cut(s)	320, 617, 871, 2072
Tru1I	TTAA	9 cut(s)	11, 543, 645, 959, 1115, 1416, 1500, 1698, 2167
Tru9I	TTAA	9 cut(s)	11, 543, 645, 959, 1115, 1416, 1500, 1698, 2167
TscAI	CASTG	7 cut(s)	495, 723, 1759, 1855, 1882, 2058, 2073
TseFI	GTSAC	2 cut(s)	1828, 1933
TseI	GCWGC	4 cut(s)	1334, 1433, 1565, 1880
Tsp45I	GTSAC	2 cut(s)	1828, 1933
TspDTI	ATGAA	7 cut(s)	237, 438, 483, 682, 845, 1410, 1919
TspGWI	ACGGA	1 cut(s)	860
TspRI	CASTG	7 cut(s)	495, 723, 1759, 1855, 1882, 2058, 2073
Tth111I	GACNNNGTC	1 cut(s)	752
Vha464I	CTTAAG	3 cut(s)	542, 644, 1697
VneI	GTGCAC	1 cut(s)	486
VpaK11BI	GGWCC	1 cut(s)	50
XagI	CCTNNNNNAGG	1 cut(s)	1649
XapI	RAATTY	4 cut(s)	44, 62, 170, 1575
XbaI	TCTAGA	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	919
XmiI	GTMKAC	1 cut(s)	1023
XmnI	GAANNNNTTC	2 cut(s)	537, 2149
XspI	CTAG	5 cut(s)	72, 207, 771, 1280, 1437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.