Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008783

Physical Location & Seq

Genomic Coordinates Forward (+)

21530467 .. 21531276

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAAACAAAGGGAAGGTCCATGATCTTGTACTTGTGGATTTTGATTGTAGCCATTCTTGTTAATCCTGGTCATTCGTTTTATGACTTGCATCCCCCCCGGGATTCGTATAACGGAAGAAATACCTGTAAGTCTTCTTCATGCGGAAATATCCCCAACATAAGCTACCCTTTTCGACTAAAAGATGATCCAAAGCACTGCGGCCAGTTAGCCTTTACACTCACTTGTGAAAACAACATTACCCTCTTCGACTCGCCTTCATCTGGGAAATTCTATGTGCAGGCAATCCACTACCATAACCAAACAATCCGACTAATAGATCCAAGCCTACTTCACAATTCCACTATCCCTAGTAATTTATTTCCCCCGTTTGTTTTGCATGATTTTCCATTTCGACCATATGGATTTCAGAGGGAGGAGTTTATGCTAACACCTATAATTTTCCTCAAGTGCGTCAATCCGATTGGAAATACTTCACTATTGTTCGTGGACACTGCGCCATGTATTGACGGCACCGATGGGTATGGTTATTTTAAGATTGGTGATATGAAATTCGGGGATTGGAACGAGGGCTGTAGTCTCCACTGGATCGCTTTCACTTTGTTGAATATCTCAGAAGACTACAACGCCACTTGCAGATACATATACAATGCGCTCTCGATTGGGTTTCACTTGCAATATTATGATAATCAAGAGTTGGAAATTTCTTACCATTATGACTGTTTAGGCCAATGGCATGATTATGACACCTGTTTTCCACGCAGCATCACAGGTACGTCAATTCTTAAATATTTAATTTATTTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

269

Amino Acids

31.07

Weight (kDa)

5.83

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	43 - 107	1.8e-19	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46610 AT3G46610
fragaria_vesca	FvH4_7g06820 FvH4_7g06820 FvH4_7g06820
malus_domestica	MD09G1019500.v1.1 MD17G1020100.v1.1
prunus_persica	Prupe.2G095300_v2.0.a1 Prupe.2G095300_v2.0.a1
pyrus_communis	pycom111g01620
rosa_chinensis	RchiOBHm_Chr1g0336521
rosa_laevigata	RLG00000029357
rosa_multiflora	Rmu_sc0001981.1_g000003 Rmu_sc0005044.1_g000026 Rmu_sc0009324.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315530
rosa_rugosa	Rorug01G0125900
rosa_samantha	Rh1AG147000 Rh1BG115100 Rh1CG138300 Rh1DG153700
rosa_wichuraiana	Rw1G009520 Rw1G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	512
AciI	CCGC	2 cut(s)	144, 201
AclWI	GGATC	3 cut(s)	182, 314, 596
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	3 cut(s)	269, 551, 702
AfaI	GTAC	2 cut(s)	32, 775
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	584
AlwI	GGATC	3 cut(s)	182, 314, 596
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	2 cut(s)	202, 727
ApeKI	GCWGC	1 cut(s)	762
ApoI	RAATTY	3 cut(s)	269, 551, 702
ArsI	GACNNNNNNTTYG	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	472
AspLEI	GCGC	2 cut(s)	499, 655
AspS9I	GGNCC	1 cut(s)	18
AsuC2I	CCSGG	2 cut(s)	100, 101
AsuHPI	GGTGA	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	512
BarI	GAAGNNNNNNTAC	2 cut(s)	121, 153
BbsI	GAAGAC	2 cut(s)	126, 624
BbvI	GCAGC	1 cut(s)	774
BccI	CCATC	1 cut(s)	512
BceAI	ACGGC	1 cut(s)	526
BciT130I	CCWGG	1 cut(s)	69
BcnI	CCSGG	2 cut(s)	100, 101
BcoDI	GTCTC	1 cut(s)	584
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	574
BisI	GCNGC	2 cut(s)	202, 763
BlsI	GCNGC	2 cut(s)	203, 764
Bme1390I	CCNGG	3 cut(s)	69, 100, 101
Bme18I	GGWCC	1 cut(s)	18
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	3 cut(s)	69, 100, 101
BmsI	GCATC	2 cut(s)	100, 774
BpiI	GAAGAC	2 cut(s)	126, 624
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	2 cut(s)	100, 101
BsaJI	CCNNGG	2 cut(s)	98, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	205, 590
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	98, 99
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	2 cut(s)	205, 590
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	774
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	204, 729
BshNI	GGYRCC	1 cut(s)	512
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	584
BsnI	GGCC	2 cut(s)	204, 729
BsoBI	CYCGRG	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	24, 187, 319, 588
BspACI	CCGC	2 cut(s)	144, 201
BspANI	GGCC	2 cut(s)	204, 729
BspCNI	CTCAG	1 cut(s)	626
BspLI	GGNNCC	1 cut(s)	514
BspPI	GGATC	3 cut(s)	182, 314, 596
BspT107I	GGYRCC	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	205, 590
BssECI	CCNNGG	2 cut(s)	98, 99
BssMI	GATC	4 cut(s)	24, 187, 319, 588
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	722
Bst6I	CTCTTC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	613
BstF5I	GGATG	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	499, 655
BstKTI	GATC	4 cut(s)	27, 190, 322, 591
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	4 cut(s)	24, 187, 319, 588
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	3 cut(s)	67, 98, 99
BstSFI	CTRYAG	1 cut(s)	574
BstV1I	GCAGC	1 cut(s)	774
BstV2I	GAAGAC	2 cut(s)	126, 624
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	204, 729
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	2 cut(s)	196, 492
BtsIMutI	CAGTG	3 cut(s)	196, 492, 583
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	2 cut(s)	499, 655
Cfr13I	GGNCC	1 cut(s)	18
Cfr9I	CCCGGG	1 cut(s)	99
CseI	GACGC	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	31, 774
CviAII	CATG	5 cut(s)	22, 141, 380, 501, 737
CviJI	RGCY	7 cut(s)	53, 165, 204, 212, 327, 573, 729
CviKI_1	RGCY	7 cut(s)	53, 165, 204, 212, 327, 573, 729
CviQI	GTAC	2 cut(s)	31, 774
DdeI	CTNAG	1 cut(s)	613
DpnI	GATC	4 cut(s)	26, 189, 321, 590
DpnII	GATC	4 cut(s)	24, 187, 319, 588
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	67
FaeI	CATG	5 cut(s)	25, 144, 383, 504, 740
FalI	AAGNNNNNCTT	2 cut(s)	154, 186
FatI	CATG	5 cut(s)	21, 140, 379, 500, 736
FauNDI	CATATG	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	202, 763
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	202, 763
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	2 cut(s)	498, 654
GluI	GCNGC	2 cut(s)	202, 763
HaeIII	GGCC	2 cut(s)	204, 729
HapII	CCGG	1 cut(s)	100
HgaI	GACGC	1 cut(s)	442
HhaI	GCGC	2 cut(s)	499, 655
Hin1II	CATG	5 cut(s)	25, 144, 383, 504, 740
Hin6I	GCGC	2 cut(s)	497, 653
HinP1I	GCGC	2 cut(s)	497, 653
HinfI	GANTC	2 cut(s)	104, 251
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	4 cut(s)	311, 411, 462, 616
Hpy188III	TCNNGA	2 cut(s)	658, 692
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	2 cut(s)	9, 267
HpyCH4III	ACNGT	1 cut(s)	722
HpyCH4IV	ACGT	1 cut(s)	776
HpyCH4V	TGCA	5 cut(s)	91, 280, 379, 636, 676
HpyF3I	CTNAG	1 cut(s)	613
HpySE526I	ACGT	1 cut(s)	776
Hsp92II	CATG	5 cut(s)	25, 144, 383, 504, 740
HspAI	GCGC	2 cut(s)	497, 653
Kzo9I	GATC	4 cut(s)	24, 187, 319, 588
Lsp1109I	GCAGC	1 cut(s)	774
LweI	GCATC	2 cut(s)	100, 774
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	776
MalI	GATC	4 cut(s)	26, 189, 321, 590
MboI	GATC	4 cut(s)	24, 187, 319, 588
MboII	GAAGA	5 cut(s)	126, 129, 129, 238, 629
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	8 cut(s)	269, 337, 355, 438, 551, 702, 780, 795
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	334, 678
MnlI	CCTC	5 cut(s)	254, 405, 409, 455, 562
MroXI	GAANNNNTTC	1 cut(s)	472
MseI	TTAA	4 cut(s)	63, 534, 786, 794
MslI	CAYNNNNRTG	1 cut(s)	741
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	3 cut(s)	69, 100, 101
MvaI	CCWGG	1 cut(s)	69
NciI	CCSGG	2 cut(s)	100, 101
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	4 cut(s)	24, 187, 319, 588
NlaIII	CATG	5 cut(s)	25, 144, 383, 504, 740
NlaIV	GGNNCC	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	203, 764
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	2 cut(s)	32, 775
RsaNI	GTAC	2 cut(s)	31, 774
RseI	CAYNNNNRTG	1 cut(s)	741
SaqAI	TTAA	4 cut(s)	63, 534, 786, 794
SatI	GCNGC	2 cut(s)	202, 763
Sau3AI	GATC	4 cut(s)	24, 187, 319, 588
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	3 cut(s)	69, 100, 101
SetI	ASST	7 cut(s)	20, 128, 167, 436, 752, 775, 779
SfaNI	GCATC	2 cut(s)	100, 774
SfcI	CTRYAG	1 cut(s)	574
SinI	GGWCC	1 cut(s)	18
SmaI	CCCGGG	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	8 cut(s)	269, 337, 355, 438, 551, 702, 780, 795
SsiI	CCGC	2 cut(s)	144, 201
SspI	AATATT	2 cut(s)	680, 791
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	3 cut(s)	67, 98, 99
TaaI	ACNGT	1 cut(s)	722
TaiI	ACGT	1 cut(s)	779
TaqI	TCGA	4 cut(s)	175, 249, 394, 659
TasI	AATT	8 cut(s)	269, 337, 355, 438, 551, 702, 780, 795
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	4 cut(s)	63, 534, 786, 794
Tru9I	TTAA	4 cut(s)	63, 534, 786, 794
TscAI	CASTG	3 cut(s)	203, 499, 590
TseI	GCWGC	1 cut(s)	762
TspDTI	ATGAA	3 cut(s)	129, 249, 563
TspGWI	ACGGA	1 cut(s)	129
TspMI	CCCGGG	1 cut(s)	99
TspRI	CASTG	3 cut(s)	203, 499, 590
VpaK11BI	GGWCC	1 cut(s)	18
XapI	RAATTY	3 cut(s)	269, 551, 702
XmaI	CCCGGG	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	472
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.