Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008783

Physical Location & Seq

Genomic Coordinates Reverse (-)

37009824 .. 37011938

Gene Structure 2115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2115 bp

ATGCAAGCTTTAATCACCCTGCCCTCTAGAGCTGAAACCTGGATAGTCCCCCAGTTGGGTTCTTGTAAACTTAGTACTCGGAGAAGGAGAAGAAAAAAGATGTGGGGTCTTGCTTTTCCTATTTGCTATGGTACAACTAGTGCAGTTTTGAAATTTGGTTTTCGATGTGGGAGTCTTTCTAGGTACTCTGAACTTAGACTTGCTAGCAATTTTGAGCTCAAGAAATGCTCTTCTTTTGTGTCGGCTTGGGCTTTGGAGGAACAAGCTATTGGGAATGAGATTAGTGTAGACAAATCGCAACATGGGTTGTTAGTGGAATGTGAGAATAGGGATGTTGTTGTGGAGGGAAGTGAGGGTGGTGGAGATAATGAAGTAGATGTGAGAAGTGGAGGAGGAGGAAATTGGGAGGAGGAGAGTGAGGTTGTTGATGTGCGTGCGCTGGCATCGAGCTTACAGTTTGCCAAAACAGCAGATGATGTGGAAGAGGTTCTGAAGGACAAGGGTAATTTGCCTCTTCAAGTATTCTCATCCATGATCAGGGGTTTTGGAAGAGACAAGTTGATGGATTCCGCATTTGCTGTTGTTGAATGGCTTAAGAGGAGGAAGGAAGAAACTAATGGTATGATTACCCCAAATTTATTTATCTTTAATAGTCTTTTGGGTGCAGTGAAGCAGTCTAAACAGTTTGGAGAAATGGATAAAGTCTTGGCTGATATGACGCAGGAAGGGGTGGAACCGAATGTTATAACTTACAATACTATAATGGCAATTTATGTAGAACAAGGACTAAGTACTAAGGCCTTTGATGTTCTTGAGGATATTCAGAAGAAGGGCTTGATTCCATCTTCAGTGACCTACTCTACAGCATTGCTGGCTTATCAGAGAATGCAAGATGGAGTTGGAGCCTTAGAGTTCTTTGTCAAGGTCAGAGAAAAGTATCGTAATGGTGATATATGTAAAGTTTCAGAAGAAGACTGGGAAAATGAGTTTCTAAAGCTCGAGAACTTTACAAAACGTGTTTGCTACCAAGTGATGCGGCGGTGGCTTGTGGTGGATGATAATTTAAGCATCAGTGTGCTAAAACTTCTAGTAAAGATGGATAATGCTGGGGTACCACTTGGTCGGGCAGAGCTTGAGCGCCTTTTGTGGGCCTGTACCCGTGAAGACCATTATAATGTGGCAAAAGAATTGTATAGTAGGATAAGAGAAAGGCATTCTGAAATAAGTCTATCCGTCTGTAATCACGTTATTTGGGTGATGGGAAAGGCTAAGAAATGGTGGGCAGCTTTGGAGATTTATGAGGATATGTTGGACAAGGGGCCAAAGCCAAATAACATGTCATATGAATTGGTAGTATCTCACTTTAATGTTCTTCTGACTGCTGCTAGAAAAAAGGGAATTTGGAGATGGGGTGTCAGGTTGCTCAACAAGATGGAAGAGAAAGGTCTTAAACCGAGAAGTAAGGAATGGAATGCAGTTCTAGTTGCCTGTTCTAAGGCTGCAGAAACTTCGGCTGCTGTCCAGATTTTTAGAAGAATGGTAGAACAAGGTCAAAAACCCACAATCCTTTCTTATGGGGCCTTGCTCAGTGCTCTTGAAAAGGGGAAACTCTATGATGAGGCTCGCCGGGTGTGGGAACATATGATCAAGGTTGCTGTAAAACCCAACCTGTATGCGTACACAATCATGGCCTCAGTTTTCAGTGGACAAGGAAAATTTAATTTGGTGGAGACCATTGTTCAAGAGATGGTTTCATCAGGGATTGAGCCAACGGTAGTCACATACAATGCAATTATTAGTGGCTGTGCACGGAATGATTCAAGCAGTGCTGATGCATATGACTGGTTTGATCGGATGAAAGCTAACAATATTCCTCCAAACAATGTTACTTATGAAATGATGATCGAGGCTCTTGCTAAAGAAGGTAAACCAAGGCTTGCATACGAGTTATATTTGAGGGCTCAAAAGCAGGGCATTCACCTCTCTGCAAAGGCTTATGATATTTTGGTCCAACCCTCAATGGTTTCTGGAGCTAGTTTTGATCTAAAACTCTTAGGGCCTCGTCCACCTGAGCAGAAAAAGGAAAATTTGCGAGGTAGAAAATCTTCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

705

Amino Acids

79.46

Weight (kDa)

8.75

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	209 - 260	1.8e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	211 - 255	3e-08	PPR repeat family
PPR_3	PF13812	234 - 293	2.9e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	246 - 290	2.3e-11	PPR repeat family
PPR_long	PF17177	376 - 531	2.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	473 - 532	1.3e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	496 - 661	8.4e-13	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	520 - 565	6.9e-07	PPR repeat family
PPR_3	PF13812	546 - 603	5.3e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	567 - 604	1.9e-06	PPR repeat family
PPR_2	PF13041	611 - 640	1.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46610 AT3G46610
fragaria_vesca	FvH4_7g06820 FvH4_7g06820 FvH4_7g06820
malus_domestica	MD09G1019500.v1.1 MD17G1020100.v1.1
prunus_persica	Prupe.2G095300_v2.0.a1 Prupe.2G095300_v2.0.a1
pyrus_communis	pycom111g01620
rosa_chinensis	RchiOBHm_Chr1g0336521
rosa_laevigata	RLG00000029357
rosa_multiflora	Rmu_sc0001981.1_g000003 Rmu_sc0005044.1_g000026 Rmu_sc0009324.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315530
rosa_rugosa	Rorug01G0125900
rosa_samantha	Rh1AG147000 Rh1BG115100 Rh1CG138300 Rh1DG153700
rosa_wichuraiana	Rw1G009520 Rw1G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	746, 1173
Acc65I	GGTACC	1 cut(s)	1111
AccB1I	GGYRCC	1 cut(s)	1111
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	3 cut(s)	570, 1036, 1039
AcsI	RAATTY	5 cut(s)	152, 634, 1398, 1715, 2086
AcuI	CTGAAG	2 cut(s)	512, 831
AfaI	GTAC	7 cut(s)	76, 133, 185, 793, 1113, 1156, 1679
AfiI	CCNNNNNNNGG	5 cut(s)	55, 56, 537, 1147, 1633
AflII	CTTAAG	1 cut(s)	593
AflIII	ACRYGT	2 cut(s)	1015, 1335
AgsI	TTSAA	6 cut(s)	151, 518, 587, 1598, 1742, 1821
AhlI	ACTAGT	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
Alw21I	GWGCWC	3 cut(s)	219, 1594, 1810
Alw26I	GTCTC	2 cut(s)	546, 1724
Alw44I	GTGCAC	1 cut(s)	1806
Ama87I	CYCGRG	1 cut(s)	998
AoxI	GGCC	6 cut(s)	798, 1149, 1319, 1578, 1689, 2057
ApaLI	GTGCAC	1 cut(s)	1806
ApeKI	GCWGC	4 cut(s)	1283, 1382, 1499, 1514
ApoI	RAATTY	5 cut(s)	152, 634, 1398, 1715, 2086
ArsI	GACNNNNNNTTYG	2 cut(s)	1322, 1354
Asp700I	GAANNNNTTC	2 cut(s)	486, 2104
Asp718I	GGTACC	1 cut(s)	1111
AspLEI	GCGC	2 cut(s)	439, 1140
AspS9I	GGNCC	5 cut(s)	1149, 1319, 1578, 2008, 2057
AsuC2I	CCSGG	1 cut(s)	1628
AsuHPI	GGTGA	4 cut(s)	7, 959, 1267, 1970
AsuNHI	GCTAGC	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	998
AvaII	GGWCC	1 cut(s)	2008
BaeGI	GKGCMC	1 cut(s)	1810
BanI	GGYRCC	1 cut(s)	1111
BanII	GRGCYC	2 cut(s)	219, 1963
BarI	GAAGNNNNNNTAC	1 cut(s)	2089
BbsI	GAAGAC	2 cut(s)	978, 1170
Bbv12I	GWGCWC	3 cut(s)	219, 1594, 1810
BbvI	GCAGC	4 cut(s)	1295, 1369, 1486, 1501
BccI	CCATC	8 cut(s)	556, 850, 887, 1090, 1252, 1401, 1426, 1741
BcgI	CGANNNNNNTGC	4 cut(s)	1491, 1525, 1895, 1929
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	2 cut(s)	534, 1644
BcnI	CCSGG	1 cut(s)	1628
BcoDI	GTCTC	2 cut(s)	546, 1724
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	8 cut(s)	27, 138, 180, 204, 1088, 1386, 1481, 2034
BfmI	CTRYAG	2 cut(s)	861, 1500
BfoI	RGCGCY	1 cut(s)	1141
BfrI	CTTAAG	1 cut(s)	593
BisI	GCNGC	5 cut(s)	1037, 1284, 1383, 1500, 1515
BlsI	GCNGC	5 cut(s)	1038, 1285, 1384, 1501, 1516
BmcAI	AGTACT	2 cut(s)	76, 793
Bme1390I	CCNGG	2 cut(s)	40, 1628
Bme18I	GGWCC	1 cut(s)	2008
BmeT110I	CYCGRG	1 cut(s)	998
BmgT120I	GGNCC	5 cut(s)	1149, 1319, 1578, 2008, 2057
BmiI	GGNNCC	5 cut(s)	735, 904, 1113, 1320, 1579
BmrFI	CCNGG	2 cut(s)	40, 1628
BmrI	ACTGGG	2 cut(s)	46, 985
BmsI	GCATC	4 cut(s)	452, 1023, 1077, 1822
BmtI	GCTAGC	1 cut(s)	207
BmuI	ACTGGG	2 cut(s)	46, 985
BpiI	GAAGAC	2 cut(s)	978, 1170
BpmI	CTGGAG	1 cut(s)	2049
Bpu10I	CCTNAGC	1 cut(s)	2070
BpuEI	CTTGAG	3 cut(s)	203, 833, 1154
BpuMI	CCSGG	1 cut(s)	1628
BsaI	GGTCTC	1 cut(s)	1724
BsaJI	CCNNGG	1 cut(s)	1931
BsaXI	ACNNNNNCTCC	2 cut(s)	1396, 1426
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 56, 537, 1147, 1633
Bse1I	ACTGG	3 cut(s)	52, 980, 1847
Bse3DI	GCAATG	1 cut(s)	866
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	1931
BseGI	GGATG	4 cut(s)	337, 527, 1060, 1860
BseLI	CCNNNNNNNGG	5 cut(s)	55, 56, 537, 1147, 1633
BseMI	GCAATG	1 cut(s)	866
BseMII	CTCAG	3 cut(s)	1600, 1707, 2061
BseNI	ACTGG	3 cut(s)	52, 980, 1847
BseRI	GAGGAG	5 cut(s)	405, 408, 422, 425, 613
BseSI	GKGCMC	1 cut(s)	1810
BseXI	GCAGC	4 cut(s)	1295, 1369, 1486, 1501
BseYI	CCCAGC	1 cut(s)	1106
BsgI	GTGCAG	2 cut(s)	162, 684
BshFI	GGCC	6 cut(s)	800, 1151, 1321, 1580, 1691, 2059
BshNI	GGYRCC	1 cut(s)	1111
BsiHKAI	GWGCWC	3 cut(s)	219, 1594, 1810
BsiHKCI	CYCGRG	1 cut(s)	998
BsiSI	CCGG	1 cut(s)	1627
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	5 cut(s)	55, 56, 537, 1147, 1633
BsmAI	GTCTC	2 cut(s)	546, 1724
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	4 cut(s)	891, 1213, 1477, 1974
BsnI	GGCC	6 cut(s)	800, 1151, 1321, 1580, 1691, 2059
Bso31I	GGTCTC	1 cut(s)	1724
BsoBI	CYCGRG	1 cut(s)	998
Bsp1286I	GDGCHC	4 cut(s)	219, 1594, 1810, 1963
Bsp143I	GATC	5 cut(s)	534, 1644, 1849, 1902, 2041
BspACI	CCGC	3 cut(s)	570, 1036, 1039
BspANI	GGCC	6 cut(s)	800, 1151, 1321, 1580, 1691, 2059
BspCNI	CTCAG	3 cut(s)	1599, 1706, 2062
BspLI	GGNNCC	5 cut(s)	735, 904, 1113, 1320, 1579
BspMAI	CTGCAG	1 cut(s)	1504
BspOI	GCTAGC	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	1111
BspTI	CTTAAG	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	1724
BsrDI	GCAATG	1 cut(s)	866
BsrI	ACTGG	3 cut(s)	52, 980, 1847
BssECI	CCNNGG	1 cut(s)	1931
BssMI	GATC	5 cut(s)	534, 1644, 1849, 1902, 2041
BssT1I	CCWWGG	1 cut(s)	1931
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	3 cut(s)	456, 684, 1774
Bst6I	CTCTTC	5 cut(s)	235, 477, 519, 544, 1431
BstAFI	CTTAAG	1 cut(s)	593
BstC8I	GCNNGC	7 cut(s)	6, 205, 435, 441, 873, 1624, 1938
BstF5I	GGATG	4 cut(s)	337, 527, 1060, 1860
BstH2I	RGCGCY	1 cut(s)	1141
BstHHI	GCGC	2 cut(s)	439, 1140
BstKTI	GATC	5 cut(s)	537, 1647, 1852, 1905, 2044
BstMAI	GTCTC	2 cut(s)	546, 1724
BstMBI	GATC	5 cut(s)	534, 1644, 1849, 1902, 2041
BstMWI	GCNNNNNNNGC	3 cut(s)	467, 872, 1042
BstNI	CCWGG	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	1339
BstSCI	CCNGG	2 cut(s)	38, 1626
BstSFI	CTRYAG	2 cut(s)	861, 1500
BstSLI	GKGCMC	1 cut(s)	1810
BstV1I	GCAGC	4 cut(s)	1295, 1369, 1486, 1501
BstV2I	GAAGAC	2 cut(s)	978, 1170
BsuRI	GGCC	6 cut(s)	800, 1151, 1321, 1580, 1691, 2059
BtsCI	GGATG	4 cut(s)	337, 527, 1060, 1860
BtsI	GCAGTG	2 cut(s)	672, 1831
BtsIMutI	CAGTG	6 cut(s)	672, 855, 1078, 1594, 1708, 1831
Cac8I	GCNNGC	7 cut(s)	6, 205, 435, 441, 873, 1624, 1938
CfoI	GCGC	2 cut(s)	439, 1140
Cfr13I	GGNCC	5 cut(s)	1149, 1319, 1578, 2008, 2057
CseI	GACGC	1 cut(s)	727
Csp6I	GTAC	7 cut(s)	75, 132, 184, 792, 1112, 1155, 1678
CviAII	CATG	4 cut(s)	302, 532, 1336, 1687
CviQI	GTAC	7 cut(s)	75, 132, 184, 792, 1112, 1155, 1678
DpnI	GATC	5 cut(s)	536, 1646, 1851, 1904, 2043
DpnII	GATC	5 cut(s)	534, 1644, 1849, 1902, 2041
Eam1104I	CTCTTC	5 cut(s)	235, 477, 519, 544, 1431
EarI	CTCTTC	5 cut(s)	235, 477, 519, 544, 1431
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	1931
Eco147I	AGGCCT	1 cut(s)	800
Eco24I	GRGCYC	2 cut(s)	219, 1963
Eco31I	GGTCTC	1 cut(s)	1724
Eco47I	GGWCC	1 cut(s)	2008
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	2 cut(s)	512, 831
Eco88I	CYCGRG	1 cut(s)	998
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	2 cut(s)	1578, 2057
EcoRII	CCWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	1931
EcoT22I	ATGCAT	1 cut(s)	1837
EcoT38I	GRGCYC	2 cut(s)	219, 1963
ErhI	CCWWGG	1 cut(s)	1931
FaeI	CATG	4 cut(s)	305, 535, 1339, 1690
FalI	AAGNNNNNCTT	2 cut(s)	818, 850
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	4 cut(s)	301, 531, 1335, 1686
FauNDI	CATATG	3 cut(s)	1342, 1641, 1837
FbaI	TGATCA	2 cut(s)	534, 1644
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	5 cut(s)	1037, 1284, 1383, 1500, 1515
FokI	GGATG	4 cut(s)	344, 514, 1067, 1867
FriOI	GRGCYC	2 cut(s)	219, 1963
Fsp4HI	GCNGC	5 cut(s)	1037, 1284, 1383, 1500, 1515
FspBI	CTAG	8 cut(s)	27, 138, 180, 204, 1088, 1386, 1481, 2034
GlaI	GCGC	2 cut(s)	438, 1139
GluI	GCNGC	5 cut(s)	1037, 1284, 1383, 1500, 1515
GsaI	CCCAGC	1 cut(s)	1110
GsuI	CTGGAG	1 cut(s)	2049
HaeII	RGCGCY	1 cut(s)	1141
HaeIII	GGCC	6 cut(s)	800, 1151, 1321, 1580, 1691, 2059
HapII	CCGG	1 cut(s)	1627
HgaI	GACGC	1 cut(s)	727
HhaI	GCGC	2 cut(s)	439, 1140
Hin1II	CATG	4 cut(s)	305, 535, 1339, 1690
Hin6I	GCGC	2 cut(s)	437, 1138
HinP1I	GCGC	2 cut(s)	437, 1138
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	4 cut(s)	172, 566, 838, 1817
HpaII	CCGG	1 cut(s)	1627
HphI	GGTGA	4 cut(s)	7, 959, 1267, 1970
Hpy166II	GTNNAC	7 cut(s)	68, 289, 1680, 1706, 1808, 1928, 2066
Hpy188III	TCNNGA	8 cut(s)	27, 220, 812, 1000, 1522, 1595, 1742, 2028
Hpy8I	GTNNAC	7 cut(s)	68, 289, 1680, 1706, 1808, 1928, 2066
HpyAV	CCTTC	6 cut(s)	78, 487, 598, 719, 823, 1916
HpyCH4III	ACNGT	3 cut(s)	456, 684, 1774
HpyCH4IV	ACGT	2 cut(s)	1015, 1245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	467, 872, 1042
HpySE526I	ACGT	2 cut(s)	1015, 1245
Hsp92II	CATG	4 cut(s)	305, 535, 1339, 1690
HspAI	GCGC	2 cut(s)	437, 1138
KpnI	GGTACC	1 cut(s)	1115
Ksp22I	TGATCA	2 cut(s)	534, 1644
Kzo9I	GATC	5 cut(s)	534, 1644, 1849, 1902, 2041
LguI	GCTCTTC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	902, 2030
Lsp1109I	GCAGC	4 cut(s)	1295, 1369, 1486, 1501
LweI	GCATC	4 cut(s)	452, 1023, 1077, 1822
MaeI	CTAG	8 cut(s)	27, 138, 180, 204, 1088, 1386, 1481, 2034
MaeII	ACGT	2 cut(s)	1015, 1245
MaeIII	GTNAC	3 cut(s)	850, 1777, 1885
MalI	GATC	5 cut(s)	536, 1646, 1851, 1904, 2043
MboI	GATC	5 cut(s)	534, 1644, 1849, 1902, 2041
MhlI	GDGCHC	4 cut(s)	219, 1594, 1810, 1963
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	3 cut(s)	880, 1290, 2035
Mph1103I	ATGCAT	1 cut(s)	1837
MroXI	GAANNNNTTC	2 cut(s)	486, 2104
MseI	TTAA	7 cut(s)	11, 594, 648, 1064, 1365, 1449, 1719
MslI	CAYNNNNRTG	4 cut(s)	1073, 1173, 1365, 1685
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	1 cut(s)	1627
MspR9I	CCNGG	2 cut(s)	40, 1628
Mva1269I	GAATGC	4 cut(s)	891, 1213, 1477, 1974
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	3 cut(s)	467, 872, 1042
NciI	CCSGG	1 cut(s)	1628
NdeI	CATATG	3 cut(s)	1342, 1641, 1837
NdeII	GATC	5 cut(s)	534, 1644, 1849, 1902, 2041
NheI	GCTAGC	1 cut(s)	203
NlaIII	CATG	4 cut(s)	305, 535, 1339, 1690
NlaIV	GGNNCC	5 cut(s)	735, 904, 1113, 1320, 1579
NmuCI	GTSAC	2 cut(s)	850, 1777
NsiI	ATGCAT	1 cut(s)	1837
NspI	RCATGY	1 cut(s)	1339
PaeR7I	CTCGAG	1 cut(s)	998
PceI	AGGCCT	1 cut(s)	800
PciI	ACATGT	1 cut(s)	1335
PciSI	GCTCTTC	1 cut(s)	235
PctI	GAATGC	4 cut(s)	891, 1213, 1477, 1974
PdmI	GAANNNNTTC	2 cut(s)	486, 2104
PfeI	GAWTC	3 cut(s)	566, 838, 1817
PkrI	GCNGC	5 cut(s)	1038, 1285, 1384, 1501, 1516
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PscI	ACATGT	1 cut(s)	1335
PsiI	TTATAA	2 cut(s)	746, 1173
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	1106
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	5 cut(s)	735, 904, 1113, 1320, 1579
PspPI	GGNCC	5 cut(s)	1149, 1319, 1578, 2008, 2057
PstI	CTGCAG	1 cut(s)	1504
RsaI	GTAC	7 cut(s)	76, 133, 185, 793, 1113, 1156, 1679
RsaNI	GTAC	7 cut(s)	75, 132, 184, 792, 1112, 1155, 1678
RseI	CAYNNNNRTG	4 cut(s)	1073, 1173, 1365, 1685
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	235
SaqAI	TTAA	7 cut(s)	11, 594, 648, 1064, 1365, 1449, 1719
SatI	GCNGC	5 cut(s)	1037, 1284, 1383, 1500, 1515
Sau3AI	GATC	5 cut(s)	534, 1644, 1849, 1902, 2041
Sau96I	GGNCC	5 cut(s)	1149, 1319, 1578, 2008, 2057
ScaI	AGTACT	2 cut(s)	76, 793
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	40, 1628
SduI	GDGCHC	4 cut(s)	219, 1594, 1810, 1963
SfaNI	GCATC	4 cut(s)	452, 1023, 1077, 1822
SfcI	CTRYAG	2 cut(s)	861, 1500
Sfr274I	CTCGAG	1 cut(s)	998
SinI	GGWCC	1 cut(s)	2008
SlaI	CTCGAG	1 cut(s)	998
SmiMI	CAYNNNNRTG	4 cut(s)	1073, 1173, 1365, 1685
SmlI	CTYRAG	5 cut(s)	218, 593, 812, 998, 1133
SmoI	CTYRAG	5 cut(s)	218, 593, 812, 998, 1133
SpeI	ACTAGT	1 cut(s)	137
SseBI	AGGCCT	1 cut(s)	800
SsiI	CCGC	3 cut(s)	570, 1036, 1039
SspI	AATATT	1 cut(s)	1870
SspMI	CTAG	8 cut(s)	27, 138, 180, 204, 1088, 1386, 1481, 2034
SstI	GAGCTC	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	800
StyD4I	CCNGG	2 cut(s)	38, 1626
StyI	CCWWGG	1 cut(s)	1931
TaaI	ACNGT	3 cut(s)	456, 684, 1774
TaiI	ACGT	2 cut(s)	1018, 1248
TaqI	TCGA	4 cut(s)	163, 446, 999, 1905
TatI	WGTACW	2 cut(s)	74, 791
TauI	GCSGC	1 cut(s)	1039
TfiI	GAWTC	3 cut(s)	566, 838, 1817
Tru1I	TTAA	7 cut(s)	11, 594, 648, 1064, 1365, 1449, 1719
Tru9I	TTAA	7 cut(s)	11, 594, 648, 1064, 1365, 1449, 1719
TscAI	CASTG	6 cut(s)	672, 855, 1078, 1594, 1708, 1831
TseFI	GTSAC	2 cut(s)	850, 1777
TseI	GCWGC	4 cut(s)	1283, 1382, 1499, 1514
Tsp45I	GTSAC	2 cut(s)	850, 1777
TspDTI	ATGAA	5 cut(s)	384, 1359, 1743, 1871, 1908
TspGWI	ACGGA	2 cut(s)	1222, 1825
TspRI	CASTG	6 cut(s)	672, 855, 1078, 1594, 1708, 1831
Vha464I	CTTAAG	1 cut(s)	593
VneI	GTGCAC	1 cut(s)	1806
VpaK11BI	GGWCC	1 cut(s)	2008
XapI	RAATTY	5 cut(s)	152, 634, 1398, 1715, 2086
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	1 cut(s)	1339
XhoI	CTCGAG	1 cut(s)	998
XmiI	GTMKAC	1 cut(s)	288
XmnI	GAANNNNTTC	2 cut(s)	486, 2104
XspI	CTAG	8 cut(s)	27, 138, 180, 204, 1088, 1386, 1481, 2034
ZrmI	AGTACT	2 cut(s)	76, 793
Zsp2I	ATGCAT	1 cut(s)	1837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.