Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013012

Physical Location & Seq

Genomic Coordinates Forward (+)

7552939 .. 7564204

Gene Structure 11266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1103200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 7443 bp

ATGGGCGATGGAGGCGTCGCATGCATGCCTTTGCAGCATAATATCATGGACACCTTTCCAATTCAGGAGAAGACTACGCTTTGCGGAGGCAAGAACGGTAACAATGGCTTCAATTCCAAGACGGTTAAGAAGAAGAAGATAGTGAAGGTAATGAAGCCCAAGAAGAAAGTTGTTAAGAAGCCCGGGTCTTCGACGAACGTGGAGTCCGAAAAAAGTGAACTGGGATTGGATAAGGGTGCTAACAGTGCAACTAAGGAAGCTGAGAATGGTGAAAATGCTGAGGAGAAGAAGGAGGAAGTGGAAGAGGGTGAATTGGGGACTTTGAAGTGGCCCAAAGTTGAAGAGGAGAATGGTGAATTCGTGCCAGAGAAGTCTAGAAGAAGTGAAATTGAGAAGGGAGAGATTGTTGGTGAGAAGTGGAGGAGAGGTGAGGTGGAGAAAGCAGAGTCCTTTTCAGGGAAATGGCGAAGAGGGGATGTAGAGAAAGGAGAGATTGTTCCAGAGAGGAGCAGAAAAGTCGAAGCTGAATTTGGGTCGTGGAGACCTCCCAAGGATGAAATTGAGAAAGGTGAGTTCATTCCAGATAGATGGCAGAAAGGGGAAGTGGCCAGAGATGACTACACTCCCAGTAAATTCCGCAGGTATGATATGGGTAAGGAGAAGAGCTGGAAATTTGATCGTGAGCGTACACCACCTCCCGGGAAGTATTCAAATGATGATCCTTTTAGAAGGAAAGACTTTAGTAGAAGTGGAAGCCAGCAGAGCAAGAGTAATGCCAGGTGGGAGAGTGGCCCTGACCGGAAGACGAGGATCAGTTCCAAAATCGTTGACGAGGACGGTGCGTACAGAAATGAGTACAGCAATGCTAAGTGCCACCCTGGAGAATACCCTTCTGTTAATCGGTTAAAAAGGTTTGGTACTGATACAAGTATCGGTGAGCGGAAGAACTATGGAGACTATGGTGATTATCCAGGTACAAAATTTCGTAGGGTTTCTGATGACACCAATCGCTCTGCCCACTCTGAGCATTATTCACGCAGTTCTGTGGAGAGGTCTTATCGGAATTCTTCGTCGTCAAGAGTTGCATCAGACAAGTACTCCTCCAGGCCTTATGAATCTACTCTGTCTTCCAGAGTAGTTTATGACAGGCATGGGAGAAGTCCAGGACCTCCAGGTCATTCTGAGCGATCCCCACGTGATCGGGCCCGTTATTTTGATCATCGGGACAGAAGCCCAATGCGCCGTGAAAGATCTCCATATGTCCATGAGAGGTCTCCATATGGTCATGAGAAATCACCATATGGTCGTGAGAAATCACCACATGGTCGTGAGAAATCTTCACATGGCCGTGAAAAATCTCCACATGGCCGTGAGAGATCTCCATATGGCCGTGAGAGATCACCATTCGGGCGCGAGAGATCTCCGTACAGCCATGAGAGATCTCCATACGTCCGCGAGAGATCACCATTTGGGCGTGAGAGATCGCCATATGGGCGTGAGAGATCTCCATATGGTCAGGAGAGATCTCCATATGATAGGAGCCGTCAATATGGTCACAGGAACCGGAGTCTGTCTCCACAAGATCGACCTCGATACCATGACCGCAGGAATCACACTCCAAATTATTTGGAGCGGTCCCCACATGATCGGATTAGACCTAATAATCATCGAGACACAAGTCGAAAAGGGGGAGCAAGTGAAAGGCGCAACTCCCATTACAGTAATAGGGGGCAAGAAGATAAGCTGATGCAGAAGGATCCCTGTGGAAAAGACTCACATTCAACTGTTAAAGAATCTCTAGATAGAAGCACTGTCCCTGATATGAATGTATCTGTGGAGACAAATACCACCATTGAGTCTCACAAAGAAGAACCATCTCAAATTCCAAGTGTAAATTGCACTGAAAATTCTCATATCAGTGTAGCCCCTCCTGAAGAGCTGCTTTCGATGGAAGAAGATATGGATATATGTGATACACCACCACATGTCCCAGTTATTGCTGATTCATCCACCGGGAAATGGTTTTACCTCGATTATTATGGTGTAGAACGTGGACCTTCAAAATTGTGTGAGCTTAAATCACTTGTTGAAGAAGGGGCTCTCATGTCTGACCACATGGTCAAGCACTCAGATAGTGATAGGTGGGTAACTGTTGAAAATGCAGTTTCACCACTGGTGACCGTACATTTCCCATCCATTGTATCAGACTCTATAACTCGACTAGTAAGCCCTCCAGAAGCTCCCGGTAATCTATTGGCAGATACTGGAGATACTGGGCAATATGATGCCCAGAGTGGGAAGGAGGCAGCGATCACTTTGCTGCCACCAGGATTTGGCCCAGATGTTGGTGGAGCTGCTTCTGAGCCTTTAGAAGATCTCCGTATTGAAGAAAGGGTTGGAGCTCTGATGGAGGGTTTGACAGTTATTCCTGGCAGGGAGCTTGAAGCTATTGGAGAAGTTTTGCAGATGTCGTTTGAATATGCACAACGAGATGGATGGGAAAACACTGCAGGTTTCAGTCAAGGCCACAATGCGGAACAGTATGATCAGAAAACCGAGGAACCTGGATACTCTGACATTAAAATAAAGGAAGCTGCAGAAATTAGGCTGACTGCACCTTCTGACAAGGACGCTGGGTTTGCTTGTGGTGATTCTGATGACTGGTTTTCTGATCGGTGGTCATGCAAGGGTGGTGATTGGAAGAGGAATGATGAAGCATCACAAGAGAGGTCTTCTAGAAAGAAATTTGTTGTAAACGATGGTTTCCCATTATGCCAGATGCCAAAGTCTGGTTATGAAGACCCTCGATGGCATAAAAAAGATGAATTGTATTATCCTTCGCAAAGCAGAAGACTTGATCTACCTACTTGGGCTTTTTCATGTCCAGATGAGATAAGTGATTTTAGTGGCATGAGCAGAACAACTCAAATTAAGCCTACTGTCATAAAAGGAATAATAGGAACTATGCTTCCAGTAGTCAGGATAAATGCTTGTGTGGTTAAAGACCATGGTTCATTTGTTTCTGAGCCTCGCATAAAAGCCCGTGGTATGGAGAGGTATACATCAAGGTCTTCTCGGTCATATACTTCAGGTAGTGATGGGAAGAGATCATCGGGAGAAGGTGATACCCAGTTGAAACCAGTTTGTGAACGGCAGTCACAGGGGTCTTCGAAATGCATTACATCTATTAACACCAAAAAAGACCGTATTTGCACAGTCGATGAGCTGCAATTGCACTTGGGTGACTGGTACTACCTTGATGGTGCTGGGCACGAACGAGGACCTTCATCATTTTCTGAGCTACAGGTCTTGGTTGATCAAGGAGTGATCTTAAAACATACCAGTATTTTCCGGAAATTTGATAAAGTCTGGGTTCCAGTGACATCTGCTGCAGAGACTTCGGAAGCTACTAATTTGAATCGGCAGGAGAAGAACACAAGATCTCGTGATACTTCAGGACTTGCTTCATCACAATCTAAAAGTGCTTTATTTGAAGAGTTGACCACAAGGTCGAGTTGGTTGCACAACCTGCACCCTCAATTCATTGGTTATACATGCGGAAAGCTTCATGAACTGGTGATGAAATCATACAAAAGCCGGGAGTTTGCTGCGGCCATAAATGATGTTCTAGATCCATGGATTAATGCAAAGCAGCCAAAGAAAGAGGTGGAGAAGCATATGTACTGGAAAATAGATGTTGATGCCCGTATTGCCAAGAGAGCCCGGTTGCTGGTTGATGAAAGTGAAGATGACTATGACTTGGGAGATGATTTGCTAACAGTTGAAAAGGATGAATCCACTTTTGAGGATCTATGTGGTGATGCTTCTTTGTACACAGAAGAGAGTAGGAGTTATGGCTCAGAGACGGGAAGCTGGGGTTTATTAGATGGGCAAGTGCTGGCGCGAATCTTTCATTTTCTGAGATTAGACATGAATTCCCTTACCTTTGCTTCTATGACCTGTAAGCACTGGAGAGCTGCTGTCAGGTTTTATAAGGATATTTCAAGACAGGTTGATTTTTCATCCTTGGGTCCCAACTGCACTGATTCCGGGATTGTGAACATTATGAGGGGTTACGGCAAAGAAAAGATTAACTCTATGGTTCTGAATGGTTGCACCAACATCACCCCCCACACTCTTGAAGAGATCCTTAGTTCACTTCCTTGTTTATCTACCATAGATATCAGAGGTTGCAACCAGTTTGGCGAGTTGGTAATTAAGTTTCAGAATCTGAACTGGATTAAGAGCCGAAGTTCATCTGGTACGAAGATATTTGAGGAATCCCATTCGAAAATTAGGAGTCTGAAACAGATCAGTGAGAAATCTTCATCTGTTTCTAGAAGTAAGGTTCTAGGCAATGATATGGATGATTTTAGTGAACTGAAAGTGTACTTCGATAGCGTGGATAAGAGAGAGACTGCAAATCTCTCATTCCGGGGAAGTTTATACAAACGTTCAAAACTATTTGATGCTAGACGGTCCTCATCCATTCTATCTAGGGATGCTCGCATGAGGCGGTTGTCCATTAAGAAATCTGAACACGGTTACAAGAAGATGGAAGAATTTGTTGCTTCAAGTCTGAAGGATATCATGAAGGAGAATACCTATGATTTCTTTGTGCCCAAGGTTGCTGAAATTCAGGATAGAATGAGAAATGGTCATTACATACGCCGGGGATTGAGTTCTGTCAAGGAGGATATCAGTCGAATGTGCAGGGATGCAATAAAAGCAAAGAATCGGGGGGATGCTGGAGACATGAATCACATTATAACATTGTTTATTCAACTTGCCACTCGTTTAGAAGCTGCTTCTAAGTCTTCTCATGAAAGAGATGAGTTGATTAAGTCATGGGAAGATGATACATTTGCAGGGTTCTCTTCATCCTCCAAGTGTAGAAAGAAGCTCAATAAAGTAGCTACTGAAAGGAAGTACTCGAATAGGAGTAATGGCGCTGTGAATGGTAGTATGGATTATGGAGAGTATGCATCTGATCGAGAAATCAGAAGGCGTTTATCCAGATTGAATAAAAAATCTATGGATTCAGAAAGTGAAACCTCTGATGATATGGACAAGTCTTCTGAATATAGCAAGAGCAATACTGATAGTACTTCTTCGGATACAGAAAGTGACACTGAATTGAAGTCACAAAGTCAAACGGGGCAGTCAAGAGCAGATGGAAGCTTTACACCTGATGAGGGTTTTGATTCTATGACTGATGATCGGGAGTGGGGTGCTCGCATGACAAAATCAAGCTTGGTTCCTCCTGTTACGAGGAAATATGAAGTTATTGAGGAATATGTTATTGTATCCAATGAGGAGGATGTGAAACGGAAAATGCAGGTATCTTTACCAGATGACTATGTTGAGAAACTTAATTCTCAGAAGAGTGGAACTGAGGAGTCTGATATGGAGCTTCCTGAAGTAAAGGATTACAAGCCAAGGAAAATGCTTGGAGAAGAGGTTTTAGAGCAAGAAGTTTATGGAATTGATCCATATAGCCACAATCTTTTACTTGACTCCATGCCAGAGGAGTTGGACTGGGATCTTGCGGAGAAGCATATGTTTGTTGAAGATGTGCTCCTTCGCACATTGAATAAGCAAGTCAGGCGGTACACTGGGAGTGGAAATACTCCTATGATCTATCCCTTGCATCCTGTTGTTGAAGAAATCCTAAAAGGTGCTGAAGAGGATGGTGATGTCCGAACTGTTAGGATGTGTCAGGGTATTTTGAAGGCCATAGAGAGCCGACATGATGATAAGTATGTTGCTTATAGGAAGGGGCTTGGTGTTGTTTGCAACAAAGAAGAAGGCTTTGGAGAAGAAGATTTTGTTGTTGAGTTTTTGGGGGAGGTATATCCTGTTTGGAAATGGTTCGAGAAGCAAGATGGGATTCGATCTTTGCAGAAAAATAATAAAGATCCAGCTCCAGAGTTTTACAACATTTATCTCGAAAGGCCCAAGGGTGACGCTGATGGGTATGATTTAGTCGTTGTTGATGCCATGCATAAGGCAAACTACGCAAGTAGAATTTGTCACTCATGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTAGATGGTCGTTACCAAATTGGAATCTACACTGTACGAAAGATTCAATATGGTGAGGAGGTGACATTCGATTACAACTCCGTTACAGAGAGTAAGGAAGAATACGAAGCGTCAGTTTGTTTGTGTGGCAGCCAAGTTTGCCGGGGAAGCTACTTGAATTTAACAGGCGAAGGTGCTTTTCAAAAGGTGCTAAAAGAGTGGCATGGAACTCTTGATCGTCATCAGTTAATGCTGGAGGCTTGCGAGTTAAATTCAGTATCTGAGGAGGACTATCTTGAGTTGGGAAGGGCTGGTTTAGGCAGTTGCTTGCTGGGTGGGTTGCCAGATTGGGTGATTGCATATTCAGCTCGCTTGGTGAGGTTTATAAATTTTGAAAGAACAAAGCTTCCTGAGGAGATTTTAAAGCACAATTTGGAAGAAAAGAGGAAGTACTTCTCAGATATTTGCCTTGAGGTTGAGAAAAGTGATGCTGAGGTTCAGGCCGAGGGTGTGTACAACCAAAGGCTTCAGAATTTGGCTGTAACTCTTGACAAGGTGAGGTATGTTATGAGATGCGCTTTTGGCAACCCCAAGGATGCTCCACCTCCGCTAGAAAGGTTAAGTCCTTTAGAAGCTGTTTCCTTTCTATGGAAGGGAGAAGGATCACTTGTACAGGAGCTTCTTCAGAGCATGGCTCCTCATGTGGAGGAACACTTGCTAAATGATCTACGGACGAAGATCCTTGCTCGTGATCCATCAGGTTCAGATGACATATGGAAAGAACTTAAAAGATCTTTATTATGGTTGAGAGATGAAGTCCGGAATCTTCCTTGTACATACAAGTCTAGAAACGATGCTGCTGCTGACTTGATCCATATTTATGCTTACACACGTTGTTTTGTTAGAATACGGGAATACAAAACTGTAACTTCGCCACCAGTATACATTAGTCCACTTGACCTAGGCCCCAAGTACACCGAGAAACTGGGATCAGGTTTTCAGGAGTATTGCAAGACGTACGGGGAAAACTATTGTTTAGGGCAGCTTATTTTTTGGTATAACCAGACTAGTGCAGAGCCGGATTGTAGCCTGGCAAGAGCGAGTAGGGGTTGCTTGTCATTACCGAACTTCAGTTCTTTCTACGCCAAGGTTCAGAAACCTTCACTGCAGCGTGTTTATGGCCCAAGGACAGTGAAGTTTATGCTAGCAAGGATGGAGAAGCAGCCGCAGAGACCTTGGCCTAAGGATCGAATATGGTCGTTTGATAACTCTCCAAAAGTTATCGGCAGTCCAATGCTGGACGCTGTTGTGCATAAATCTCATTTGGACAGGGAGATGGTGCATTGGTTAAAGCACAGACCCGCGATATTTCAGGCAATGTGGGATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

2481

Amino Acids

282.86

Weight (kDa)

6.72

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GYF_ATXR3	PF25531	672 - 719	3.3e-29	Histone-lysine N-methyltransferase ATXR3, GYF domain
GYF_ATXR3	PF25531	1081 - 1114	1.3e-07	Histone-lysine N-methyltransferase ATXR3, GYF domain
SET	PF00856	1768 - 2050	4e-12	SET domain
SDG2_C	PF19633	2061 - 2480	3e-242	Protein SET DOMAIN GROUP 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15180
fragaria_vesca	FvH4_6g43760
malus_domestica	MD09G1103200.v1.1 MD17G1091000.v1.1
prunus_persica	Prupe.3G222600_v2.0.a1
pyrus_communis	pycom09g02660 pycom17g08780
rosa_chinensis	RchiOBHm_Chr2g0160501
rosa_laevigata	RLG00000021218
rosa_multiflora	Rmu_sc0000674.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089780
rosa_rugosa	Rorug02G0483400 Rorug02G0483400
rosa_samantha	Rh2AG548700 Rh2BG562400 Rh2CG533000 Rh2DG571100
rosa_wichuraiana	Rw2G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	3993, 4769, 6437
AasI	GACNNNNNNGTC	3 cut(s)	1173, 2117, 3508
Acc36I	ACCTGC	4 cut(s)	630, 2501, 3537, 5329
AccB7I	CCANNNNNTGG	3 cut(s)	2333, 2345, 2789
AccBSI	CCGCTC	2 cut(s)	940, 1633
AccI	GTMKAC	2 cut(s)	3059, 6993
AccII	CGCG	4 cut(s)	1413, 1455, 3904, 7415
AccIII	TCCGGA	2 cut(s)	3351, 6870
AclI	AACGTT	1 cut(s)	4453
AcoI	YGGCCR	5 cut(s)	606, 1345, 1366, 1387, 3612
AcuI	CTGAAG	9 cut(s)	1953, 3072, 3438, 4601, 5439, 5703, 6563, 6719, 7165
AcvI	CACGTG	1 cut(s)	1196
AcyI	GRCGYC	1 cut(s)	15
AflIII	ACRYGT	2 cut(s)	1984, 6941
AhlI	ACTAGT	2 cut(s)	2221, 7118
AjuI	GAANNNNNNNTTGG	6 cut(s)	513, 545, 2379, 2411, 5796, 5828
AleI	CACNNNNGTG	1 cut(s)	3240
AloI	GAACNNNNNNTCC	8 cut(s)	188, 220, 480, 512, 2953, 2985, 6442, 6474
Alw21I	GWGCWC	3 cut(s)	2404, 5236, 5580
AlwNI	CAGNNNCTG	3 cut(s)	2264, 4231, 6332
Ama87I	CYCGRG	2 cut(s)	182, 698
Aor13HI	TCCGGA	2 cut(s)	3351, 6870
ApaI	GGGCCC	1 cut(s)	1207
ArsI	GACNNNNNNTTYG	4 cut(s)	188, 220, 2621, 2653
AseI	ATTAAT	1 cut(s)	3642
Asp700I	GAANNNNTTC	2 cut(s)	5870, 6503
AspA2I	CCTAGG	1 cut(s)	7012
AspLEI	GCGC	6 cut(s)	1242, 1413, 1707, 3904, 4952, 6629
AsuII	TTCGAA	2 cut(s)	3170, 4289
AsuNHI	GCTAGC	1 cut(s)	7255
AvaI	CYCGRG	2 cut(s)	182, 698
AvaII	GGWCC	6 cut(s)	1166, 1635, 2054, 3281, 4031, 4479
AvrII	CCTAGG	1 cut(s)	7012
AxyI	CCTNAGG	2 cut(s)	6462, 7293
BaeGI	GKGCMC	3 cut(s)	1207, 3273, 4623
BalI	TGGCCA	1 cut(s)	608
BamHI	GGATCC	1 cut(s)	1756
BanII	GRGCYC	4 cut(s)	1207, 2101, 2404, 3724
BarI	GAAGNNNNNNTAC	4 cut(s)	3665, 3697, 6714, 6746
BauI	CACGAG	2 cut(s)	3444, 6798
BbrPI	CACGTG	1 cut(s)	1196
Bbv12I	GWGCWC	3 cut(s)	2404, 5236, 5580
BbvCI	CCTCAGC	2 cut(s)	279, 6543
BceAI	ACGGC	7 cut(s)	1227, 1332, 1353, 1374, 1527, 3167, 4093
BciVI	GTATCC	3 cut(s)	2561, 5110, 5317
BclI	TGATCA	3 cut(s)	1216, 2545, 3316
BcuI	ACTAGT	2 cut(s)	2221, 7118
BfmI	CTRYAG	6 cut(s)	2508, 2595, 3302, 3390, 6072, 7217
BfoI	RGCGCY	1 cut(s)	4953
BfuAI	ACCTGC	4 cut(s)	630, 2501, 3537, 5329
BfuI	GTATCC	3 cut(s)	2561, 5110, 5317
BglI	GCCNNNNNGGC	1 cut(s)	1492
BglII	AGATCT	9 cut(s)	1250, 1376, 1418, 1439, 1502, 1523, 2374, 3440, 6842
BlnI	CCTAGG	1 cut(s)	7012
BmcAI	AGTACT	4 cut(s)	1097, 4931, 5107, 6503
Bme18I	GGWCC	6 cut(s)	1166, 1635, 2054, 3281, 4031, 4479
BmeT110I	CYCGRG	2 cut(s)	182, 698
BmrI	ACTGGG	8 cut(s)	230, 621, 1985, 2283, 3124, 5548, 5625, 7046
BmtI	GCTAGC	1 cut(s)	7259
BmuI	ACTGGG	8 cut(s)	230, 621, 1985, 2283, 3124, 5548, 5625, 7046
BoxI	GACNNNNGTC	1 cut(s)	1677
BplI	GAGNNNNNCTC	4 cut(s)	1558, 1590, 6730, 6762
BpmI	CTGGAG	9 cut(s)	900, 1087, 1155, 2217, 2286, 3991, 4770, 5910, 6326
Bpu10I	CCTNAGC	2 cut(s)	279, 6543
Bpu14I	TTCGAA	2 cut(s)	3170, 4289
BpuEI	CTTGAG	2 cut(s)	6368, 6542
BsaAI	YACGTR	1 cut(s)	1196
BsaBI	GATNNNNATC	1 cut(s)	6291
BsaHI	GRCGYC	1 cut(s)	15
BsaI	GGTCTC	3 cut(s)	535, 1278, 7276
BsaWI	WCCGGW	4 cut(s)	798, 1563, 3351, 6870
Bse21I	CCTNAGG	2 cut(s)	6462, 7293
Bse3DI	GCAATG	3 cut(s)	868, 4363, 7434
Bse8I	GATNNNNATC	1 cut(s)	6291
BseAI	TCCGGA	2 cut(s)	3351, 6870
BseJI	GATNNNNATC	1 cut(s)	6291
BseMI	GCAATG	3 cut(s)	868, 4363, 7434
BseSI	GKGCMC	3 cut(s)	1207, 3273, 4623
BseYI	CCCAGC	4 cut(s)	2633, 3266, 3873, 6382
BsgI	GTGCAG	5 cut(s)	2598, 3515, 4024, 4732, 7143
Bsh1236I	CGCG	4 cut(s)	1413, 1455, 3904, 7415
BsiHKAI	GWGCWC	3 cut(s)	2404, 5236, 5580
BsiHKCI	CYCGRG	2 cut(s)	182, 698
BsiWI	CGTACG	1 cut(s)	7068
BslFI	GGGAC	6 cut(s)	331, 1238, 1621, 1799, 1973, 4017
BsmBI	CGTCTC	1 cut(s)	3857
BsmFI	GGGAC	6 cut(s)	331, 1238, 1621, 1799, 1973, 4017
Bso31I	GGTCTC	3 cut(s)	535, 1278, 7276
BsoBI	CYCGRG	2 cut(s)	182, 698
Bsp119I	TTCGAA	2 cut(s)	3170, 4289
Bsp120I	GGGCCC	1 cut(s)	1203
Bsp1286I	GDGCHC	8 cut(s)	1207, 2101, 2404, 3273, 3724, 4623, 5236, 5580
Bsp13I	TCCGGA	2 cut(s)	3351, 6870
Bsp1407I	TGTACA	4 cut(s)	3831, 6564, 6721, 6884
Bsp19I	CCATGG	2 cut(s)	3007, 3635
BspEI	TCCGGA	2 cut(s)	3351, 6870
BspFNI	CGCG	4 cut(s)	1413, 1455, 3904, 7415
BspHI	TCATGA	4 cut(s)	1285, 3568, 4590, 4822
BspMAI	CTGCAG	4 cut(s)	2512, 2599, 3394, 7221
BspMI	ACCTGC	4 cut(s)	630, 2501, 3537, 5329
BspOI	GCTAGC	1 cut(s)	7259
BspQI	GCTCTTC	2 cut(s)	656, 1929
BspT104I	TTCGAA	2 cut(s)	3170, 4289
BspTNI	GGTCTC	3 cut(s)	535, 1278, 7276
BsrBI	CCGCTC	2 cut(s)	940, 1633
BsrDI	GCAATG	3 cut(s)	868, 4363, 7434
BsrGI	TGTACA	4 cut(s)	3831, 6564, 6721, 6884
BssNAI	GTATAC	2 cut(s)	3060, 6994
BssNI	GRCGYC	1 cut(s)	15
BssSI	CACGAG	2 cut(s)	3444, 6798
Bst1107I	GTATAC	2 cut(s)	3060, 6994
Bst2BI	CACGAG	2 cut(s)	3444, 6798
BstACI	GRCGYC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	3529
BstAUI	TGTACA	4 cut(s)	3831, 6564, 6721, 6884
BstBAI	YACGTR	1 cut(s)	1196
BstBI	TTCGAA	2 cut(s)	3170, 4289
BstDSI	CCRYGG	3 cut(s)	3007, 3043, 3635
BstEII	GGTNACC	1 cut(s)	2176
BstFNI	CGCG	4 cut(s)	1413, 1455, 3904, 7415
BstH2I	RGCGCY	1 cut(s)	4953
BstHHI	GCGC	6 cut(s)	1242, 1413, 1707, 3904, 4952, 6629
BstNSI	RCATGY	4 cut(s)	24, 28, 1988, 3558
BstPAI	GACNNNNGTC	1 cut(s)	1677
BstPI	GGTNACC	1 cut(s)	2176
BstSFI	CTRYAG	6 cut(s)	2508, 2595, 3302, 3390, 6072, 7217
BstSLI	GKGCMC	3 cut(s)	1207, 3273, 4623
BstUI	CGCG	4 cut(s)	1413, 1455, 3904, 7415
BstXI	CCANNNNNNTGG	1 cut(s)	588
BstZ17I	GTATAC	2 cut(s)	3060, 6994
Bsu36I	CCTNAGG	2 cut(s)	6462, 7293
BsuI	GTATCC	3 cut(s)	2561, 5110, 5317
BtgI	CCRYGG	3 cut(s)	3007, 3043, 3635
BtgZI	GCGATG	1 cut(s)	21
BtsI	GCAGTG	2 cut(s)	2505, 7214
BveI	ACCTGC	4 cut(s)	630, 2501, 3537, 5329
CaiI	CAGNNNCTG	3 cut(s)	2264, 4231, 6332
CciI	TCATGA	4 cut(s)	1285, 3568, 4590, 4822
CfoI	GCGC	6 cut(s)	1242, 1413, 1707, 3904, 4952, 6629
Cfr9I	CCCGGG	2 cut(s)	182, 698
CseI	GACGC	5 cut(s)	4, 2639, 5975, 6171, 7361
DraI	TTTAAA	1 cut(s)	6474
DrdI	GACNNNNNNGTC	3 cut(s)	1173, 2117, 3508
DseDI	GACNNNNNNGTC	3 cut(s)	1173, 2117, 3508
EaeI	YGGCCR	5 cut(s)	606, 1345, 1366, 1387, 3612
Ecl136II	GAGCTC	1 cut(s)	2402
Eco147I	AGGCCT	1 cut(s)	1108
Eco24I	GRGCYC	4 cut(s)	1207, 2101, 2404, 3724
Eco31I	GGTCTC	3 cut(s)	535, 1278, 7276
Eco32I	GATATC	3 cut(s)	4183, 4588, 4699
Eco47I	GGWCC	6 cut(s)	1166, 1635, 2054, 3281, 4031, 4479
Eco53kI	GAGCTC	1 cut(s)	2402
Eco57I	CTGAAG	9 cut(s)	1953, 3072, 3438, 4601, 5439, 5703, 6563, 6719, 7165
Eco72I	CACGTG	1 cut(s)	1196
Eco81I	CCTNAGG	2 cut(s)	6462, 7293
Eco88I	CYCGRG	2 cut(s)	182, 698
Eco91I	GGTNACC	1 cut(s)	2176
EcoICRI	GAGCTC	1 cut(s)	2402
EcoO109I	RGGNCCY	4 cut(s)	1166, 3281, 4031, 7016
EcoO65I	GGTNACC	1 cut(s)	2176
EcoRI	GAATTC	3 cut(s)	356, 1063, 3934
EcoRV	GATATC	3 cut(s)	4183, 4588, 4699
EcoT22I	ATGCAT	4 cut(s)	26, 3179, 4987, 6006
EcoT38I	GRGCYC	4 cut(s)	1207, 2101, 2404, 3724
Esp3I	CGTCTC	1 cut(s)	3857
FalI	AAGNNNNNCTT	6 cut(s)	1926, 1958, 4134, 4166, 6702, 6734
FaqI	GGGAC	6 cut(s)	331, 1238, 1621, 1799, 1973, 4017
FauI	CCCGC	1 cut(s)	7420
FbaI	TGATCA	3 cut(s)	1216, 2545, 3316
FblI	GTMKAC	2 cut(s)	3059, 6993
FriOI	GRGCYC	4 cut(s)	1207, 2101, 2404, 3724
GlaI	GCGC	6 cut(s)	1241, 1412, 1706, 3903, 4951, 6628
GsaI	CCCAGC	4 cut(s)	2637, 3270, 3877, 6386
GsuI	CTGGAG	9 cut(s)	900, 1087, 1155, 2217, 2286, 3991, 4770, 5910, 6326
HaeII	RGCGCY	1 cut(s)	4953
HgaI	GACGC	5 cut(s)	4, 2639, 5975, 6171, 7361
HhaI	GCGC	6 cut(s)	1242, 1413, 1707, 3904, 4952, 6629
Hin1I	GRCGYC	1 cut(s)	15
Hin6I	GCGC	6 cut(s)	1240, 1411, 1705, 3902, 4950, 6627
HinP1I	GCGC	6 cut(s)	1240, 1411, 1705, 3902, 4950, 6627
HincII	GTYRAC	2 cut(s)	829, 3501
HindII	GTYRAC	2 cut(s)	829, 3501
HindIII	AAGCTT	4 cut(s)	3563, 5179, 5251, 6455
Hpy99I	CGWCG	3 cut(s)	20, 196, 1075
HpyCH4IV	ACGT	7 cut(s)	198, 1195, 1449, 2050, 4453, 6943, 7067
HpySE526I	ACGT	7 cut(s)	198, 1195, 1449, 2050, 4453, 6943, 7067
Hsp92I	GRCGYC	1 cut(s)	15
HspAI	GCGC	6 cut(s)	1240, 1411, 1705, 3902, 4950, 6627
KflI	GGGWCCC	1 cut(s)	4031
Kpn2I	TCCGGA	2 cut(s)	3351, 6870
Ksp22I	TGATCA	3 cut(s)	1216, 2545, 3316
LguI	GCTCTTC	2 cut(s)	656, 1929
MaeII	ACGT	7 cut(s)	198, 1195, 1449, 2050, 4453, 6943, 7067
MbiI	CCGCTC	2 cut(s)	940, 1633
MfeI	CAATTG	1 cut(s)	3230
MhlI	GDGCHC	8 cut(s)	1207, 2101, 2404, 3273, 3724, 4623, 5236, 5580
MlsI	TGGCCA	1 cut(s)	608
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	9 cut(s)	212, 455, 1576, 1766, 1865, 2201, 4309, 5408, 5510
MmeI	TCCRAC	2 cut(s)	2377, 5514
Mox20I	TGGCCA	1 cut(s)	608
Mph1103I	ATGCAT	4 cut(s)	26, 3179, 4987, 6006
MroI	TCCGGA	2 cut(s)	3351, 6870
MroXI	GAANNNNTTC	2 cut(s)	5870, 6503
MscI	TGGCCA	1 cut(s)	608
MslI	CAYNNNNRTG	6 cut(s)	1326, 1347, 1368, 1917, 3240, 6930
Msp20I	TGGCCA	1 cut(s)	608
MunI	CAATTG	1 cut(s)	3230
MvnI	CGCG	4 cut(s)	1413, 1455, 3904, 7415
NcoI	CCATGG	2 cut(s)	3007, 3635
NheI	GCTAGC	1 cut(s)	7255
NmeAIII	GCCGAG	1 cut(s)	6580
NsiI	ATGCAT	4 cut(s)	26, 3179, 4987, 6006
NspI	RCATGY	4 cut(s)	24, 28, 1988, 3558
NspV	TTCGAA	2 cut(s)	3170, 4289
OliI	CACNNNNGTG	1 cut(s)	3240
PaeI	GCATGC	2 cut(s)	24, 28
PagI	TCATGA	4 cut(s)	1285, 3568, 4590, 4822
PceI	AGGCCT	1 cut(s)	1108
PciI	ACATGT	1 cut(s)	1984
PciSI	GCTCTTC	2 cut(s)	656, 1929
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PdmI	GAANNNNTTC	2 cut(s)	5870, 6503
Pfl23II	CGTACG	1 cut(s)	7068
PflMI	CCANNNNNTGG	3 cut(s)	2333, 2345, 2789
PfoI	TCCNGGA	2 cut(s)	1162, 4049
PleI	GAGTC	9 cut(s)	211, 454, 1575, 1766, 1864, 2201, 4308, 5407, 5510
PmaCI	CACGTG	1 cut(s)	1196
PmlI	CACGTG	1 cut(s)	1196
PpsI	GAGTC	9 cut(s)	211, 454, 1575, 1766, 1864, 2201, 4308, 5407, 5510
Ppu21I	YACGTR	1 cut(s)	1196
PpuMI	RGGWCCY	3 cut(s)	1166, 3281, 4031
PscI	ACATGT	1 cut(s)	1984
PshAI	GACNNNNGTC	1 cut(s)	1677
PshBI	ATTAAT	1 cut(s)	3642
PsiI	TTATAA	3 cut(s)	3993, 4769, 6437
Psp124BI	GAGCTC	1 cut(s)	2404
Psp1406I	AACGTT	1 cut(s)	4453
Psp5II	RGGWCCY	3 cut(s)	1166, 3281, 4031
PspCI	CACGTG	1 cut(s)	1196
PspEI	GGTNACC	1 cut(s)	2176
PspFI	CCCAGC	4 cut(s)	2633, 3266, 3873, 6382
PspLI	CGTACG	1 cut(s)	7068
PspOMI	GGGCCC	1 cut(s)	1203
PspPPI	RGGWCCY	3 cut(s)	1166, 3281, 4031
PstI	CTGCAG	4 cut(s)	2512, 2599, 3394, 7221
PstNI	CAGNNNCTG	3 cut(s)	2264, 4231, 6332
RseI	CAYNNNNRTG	6 cut(s)	1326, 1347, 1368, 1917, 3240, 6930
SacI	GAGCTC	1 cut(s)	2404
SapI	GCTCTTC	2 cut(s)	656, 1929
ScaI	AGTACT	4 cut(s)	1097, 4931, 5107, 6503
SchI	GAGTC	9 cut(s)	212, 455, 1576, 1766, 1865, 2201, 4309, 5408, 5510
SduI	GDGCHC	8 cut(s)	1207, 2101, 2404, 3273, 3724, 4623, 5236, 5580
SfcI	CTRYAG	6 cut(s)	2508, 2595, 3302, 3390, 6072, 7217
SfuI	TTCGAA	2 cut(s)	3170, 4289
SinI	GGWCC	6 cut(s)	1166, 1635, 2054, 3281, 4031, 4479
SmaI	CCCGGG	2 cut(s)	184, 700
SmiMI	CAYNNNNRTG	6 cut(s)	1326, 1347, 1368, 1917, 3240, 6930
SmlI	CTYRAG	2 cut(s)	6347, 6521
SmoI	CTYRAG	2 cut(s)	6347, 6521
SpeI	ACTAGT	2 cut(s)	2221, 7118
SphI	GCATGC	2 cut(s)	24, 28
SseBI	AGGCCT	1 cut(s)	1108
SstI	GAGCTC	1 cut(s)	2404
StuI	AGGCCT	1 cut(s)	1108
TaiI	ACGT	7 cut(s)	201, 1198, 1452, 2053, 4456, 6946, 7070
TaqII	GACCGA	1 cut(s)	3066
TauI	GCSGC	2 cut(s)	3614, 7279
TspGWI	ACGGA	5 cut(s)	1413, 2369, 5344, 6142, 6796
TspMI	CCCGGG	2 cut(s)	182, 698
Van91I	CCANNNNNTGG	3 cut(s)	2333, 2345, 2789
VpaK11BI	GGWCC	6 cut(s)	1166, 1635, 2054, 3281, 4031, 4479
VspI	ATTAAT	1 cut(s)	3642
XbaI	TCTAGA	6 cut(s)	374, 1798, 2735, 3628, 4337, 6896
XceI	RCATGY	4 cut(s)	24, 28, 1988, 3558
XmaI	CCCGGG	2 cut(s)	182, 698
XmaJI	CCTAGG	1 cut(s)	7012
XmiI	GTMKAC	2 cut(s)	3059, 6993
XmnI	GAANNNNTTC	2 cut(s)	5870, 6503
ZrmI	AGTACT	4 cut(s)	1097, 4931, 5107, 6503
Zsp2I	ATGCAT	4 cut(s)	26, 3179, 4987, 6006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.