Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013012

Physical Location & Seq

Genomic Coordinates Forward (+)

11703863 .. 11716870

Gene Structure 13008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 7443 bp

ATGGGCGATGGAGGAGTCGCATGCATGCCTTTGCAGCATAATATCATGGACAGGTTTCCAATTCCGGAGAAGACTGCGCTTTGCGGAGGCAATACTAATTCTAATGCTACTACTACTACTACCACCGCTAACAATGGCTTCAATTCCAAGCCGGTTGTTAAGAAGAAGGTAATGAAGATCAAGAAGAGGATTGTCAAGAAGCCCAAGGCAAAAAGCAACAGTAACGTAGAGTCGGGGAAGAGTGAGCTGGGATTGGTTAAAGGTGAGAAGAGTGATACTACTACTAAGGAAGCAGCAGACAACAGTGCTGCCAAGGAAGCAGCCGAGAAGAGTGGTGTGAAGGGAGCTGAGAAGAGTACTGTAAAGGAATCTGAGAACAGTGCTGCTCAGGAAGTTGAGAACGTCGAAAATGGTGAGGATAAGAAGGAGGAAGTGGAAGAAGGTGAATTGGGGACTTTGAATGGTGAATTTGTTCCGGACAAGTGGCGGAGAAGCGAGGTTGAGAAGGAGGAGATTGGGGGTGAGAAATGGAGGAGAAGCGAGGTGGAGAAGGGAGAGTCTTTTTCTGGGAAATGGCGTAGAGGTGATGCAGAGAAGGCAGATATATATCCGGAGAAGAGTAGAAATAGTGAAGCCGAATTCGGCTCGTGGAGACCACCCAAGGATGAAATTGAAAGAGGTGAGTATATTCCAGATAGATGGCAAAAAGGAGAGCTGGCCAGAGATGACTACAGTAACCGAAAAATTCCCGCCAGGTATGATATGGGTGGGAGGGGCAGGGGAAGGGGCTGGAAATTTGAGTCCCCTTCCGGCAAGTATCCAAATGATGACGGGTTTAGAAGGAAAGAATATAGTAGAGGTGGGGGTCAGCACAGCAAGAGTACTTTCAGGTGGGAAAGTGGCCTGGAGAGGAATACAAGGATCAGTTCCAAAATTGTTGATGATGAGGGTGTCTACAAGAATGAGTACAGCAGTGAGTACAGCAATGGTAAGTATCAAGCAAAGGATTACTCTTCTGTTAATCGGTTGAAGAGGTATGGTCCTGATTCAAATAGTAGTGAGCGGAAGCACTATGGAGATTATGGGGATTATGCGGGTTTAAAAAGTCGCAAGCTTTCTGATGAAAGTAATCGCTCTGCTCACTCTGAGCATTACTCACACCGTTCTGTGGAGAGATCTTATCGAAATCCTTCTTTTAGACCAGCATCAGACAAGTACTCTTCCAGGCATTATGAACCTGCTTTGTCTTCCAGGGTGGTTTATGACAGGCATGGGCGAAGTCCAGGTCTCTCTGAGCGGTCCCCACGTGACAGGTCTCGGTATTATGATCACCTGGACCGGAGTCCAGTGCGCCGTGAGAGATCTCCATATGATCTAGAGAGGTCCCCTTATGGCCGTGAGAAATCACCATATGGCCGTGAGAGATCTCCATATGGTCACGAGAAATCTCCATATGTTCGTGAGAAATCTCCATATGTTCGTGACAGATCTCCATATGTTCGTGACAAGTCTCCGTATGCTCGCGAGAAGTCACCATATGGACGTGAAAGATCTCCATATGTTCGTGACAGATCTCCTTATGTTCTGGAGAGATCTCCATACGAACGGAGCCGTAATTATGATCACAGAAACCGCAGTTTGTCTCCACAAGATCGACCTAGGTACCATGATCGCAGGGATCACACCCCAAACTATTTGGAGCGGTCACCACGTGGTGACCGGGGTAGAGCTTCTAGTTATAGAGGTACAGGCCGCAAAAGTGGAGCAAGTGATAGGCGCAACTCCCAATATAAAGCGCATGAAGATAAGCTGGTGCAGAAGGATCCCACGGGAACGGACTCGAATTCCTCTGGTAAAGAATGTCAGGATAGAAGCAGTGTTCTTGACATTAATGGAACTGTGGAGACAAACGCCAATTCTGAGTCTCACAAAGAAGAACCGTCTCAAAGTCCAAATATAAATTGCAAAGAAACTTCTCATATTAGTGCAGTCCCTCCTGAAGAGCTGCCTTCTATGGAAGAAGATATGGATATATGCGACACACCACCACATGTCCCGGTGATTGCTGATTCATCCACAGGGAAATGGTTTTACCTTGATTATTATGGTGTGGAATGTGGGCCTTCCAAATTATGTGAGCTTAAAGCACTTGTTGAAGAAGGAGCTCTGATGTCTGATCACATGGTCAAGCACTCAGACAGTGATAGGTGGGTAACTGTTGAAAATGCAGTTTCGCCATTGATTACCGTAAATTTTCCATCCATTGTATCGGACTCGATAACTGGACTAGTAAGCCCTCCAGAAGCTCCTGGCAATCTATTGGCAGATATTGGACATACTGGGCACTATGGTACTCAGAGTGGGAGTTTGCCGGGGTTGTGTGCAGATGTTGCTTCTGAGCCTCTAGAAGATTTGCACATCGAAGAAAGGGTCGGAGCTCTGATGGAAGGTTTAACAGTTATTCCTGGCAGGGAACTTGAAGCTGTTGGAGAAGTTCTGCAAATGTCATTTGAATCTGCTCAACTGGAAGTATGGGGAAACACTGAAGGTCTCTCTCAAGGTCATATCGGTGAACAGAATGATCAGAAAACTGAGGAACCACGATTTTCTGACATTAAAATGAAAGCAGCAGAAATAGGGTTGACTTTACCCTCTGACAAAGATGCTTTTGCTTGTGGTGATTCCGGTGACTGGTTTTCTGATCGATGGTCATGCAAGGGTGGTGATTGGAAAAGGAACGAAGAAGGTGTGCAAGATAGGTGTTCCAGAAAGAAACTTGTTGTCAACGATGGTTTCCCATTATGCCAGATGTCAAAATCTGGGTATGAAGACCCTCGATGGCAAAGAAAAGATGAACTGTATTATCCTTCACAGAACAGAAGGCTTGATCTACCTACTTGGGCTTTTTCATGTCCAGATGATGCTAATAGAGTGTCTCAAAGTAAGCCAACTGTTATCAAAGGAGTAAAAGGAACTATCCTTCCGGTAGTCAAGATAAATGCATGTGTTGTAAAAGACCACGGTTCATTTGTTTCTGAGCCGCGGATAAAAGCACGAGGAATGGAAAGGCATCCTTCGAGGTCTGCTCGGTCATATTCCGCAAGTAGTGATGGCAAGAGATCATCTGGCGATGGTGATTCTCAAATGAAACCAGTAGGTGACCGAGGTTCAAAGGGATCTTCCACATGCATTTCCTCCATTAAAATCCCCAAAGACCGGATTGGCACAGTTGATGACTTGCAATTGCATTTGGGAGACTGGTACTACCTTGATGGTGCTGGGCATGAACGAGGACCTTCATCATTCTGTGAGCTACAGGCCTTAGTTGATCAAGGAGTGATCCTGAAACATAGCAGTGTGTTCCGGAAATTTGATAAAGTCTGGGTTCCAGTTACCTCTGCCATTGAGACTTCTGATGCTACCAAAATGAACAAGGAGAAGAACAGAACCTCAAGTAATTTTTCAGGGCAATCTCAAAGTGCTGCACTTGCAGAATCAAAAACAAATTTGAGTTGGTTGCAGAATCTGCACCCTCAGTTCATTGGTTATACATGCGGAAAGCTTCATGAATTGGTGATGAAATCTTATAAAAGTCGGGAGTTTGCTGCAGCCATAAATGAGGTTTTAGATCCGTGGATTAATGCAAGGCAGCCAAAAAAAGAGTTGGACAAGCACATGTACTGGAAAGCAGATGGTGATGCACGTTCTTCTAAAAGAGCTCGGTTGCTGGTTGATGAAAGTGAAGAAGACTATGATGCAGAAGAGGACTTGCAAACAATAGAAAAGGATGAATCCGCATTTGAGGATCTAATTGGTAATGCTTCTTTCTTCAGAGAAGACGGCTTGAGTTATGGATCAGAGATGGCAAGCTGGGGTTTATTGGATGGACATGTGCTGGCACGGGTCTTTCATTTTTTAAGATTAGACATGAAATCTCTTACCATTGCTTCTCTGACTTGTAAGCACTGGAGAGCTGCGGTCAGTTTTTACAAGGATATTTCAAGACAGGTAGACTTGTCATCCTTGGGTCCCAACTGCACCGACTCCATGATTGTGAACATTATGAGTGGTTATGGCAAAGAGAAGATTAATTCTATGGTTCTAATTGGTTGCATAAACATCACTCCCCACACTCTTGAAGAGATTCTTGGTTCACTTCCTTGTCTATCTACCATAGATATTAGGGGTTGCAACCAGTTTGGTGAGTTGGTCATTAAATTTCAGAACCTGAACTGGATTAAGAGCCGAAGCTCACGTGGTACAAAGATACATGATGAATCCAATTCAAAATTAAGGAGTCTGAAATATATTAGTGAGAAATCTTCTTATTTTTCGAGAAGTAAGGTTCTGGGTAATGATATGGATGATTTTAGTGAACTCAAAGTGTACTTTGATAGTGTGGATAAGAGAGACTCAGCTAATCAATCATTCCGGGGAAGTTTATACAAACGTTCAAAACTTTTTGATGCTAGACGGTCCTCATCCATTCTATCTAGGGATGCTCGTATGAGGCGGTTGTCCATTAAGAAATCAGAAAATGGTTATAAGAGGATGGAGGAATTTGTTGCTTCAAGTCTGAAGGACATCATGAAGGAGAATACATCTGATTTCTTTGTACCCAAGGTTGCTGAAATTCAAGATAGAATGAGAAATGGGTATTACATTCGCCGAGGATTGAGTTCGGTGAAGGAGGATATCAGTCGAATGTGCAGGGATGCAATTAAAGCAAAGAATCGTGGTGAAGCTGGAGATATTAATCACCTGAATCACATTATTAATTTATTTATACAACTTGCCACACGTTTGGAAGGGGCTTCCAAGTCTTCTGATGCAAGGGATGAGCTGATCAAGTCGTGGGAAGATGATACATTTGCAGGGGTTTCTTCTGCCTCCAAGAGTAAAAAGAAGCTCAATAAGACATCTGAAAGGAAGTTGAGGAGTAATGGTTCCTTTATGAATGGTAGTGTGGATAATGGAGAATATGCATCTGATCGAGAAATCAGAAGGCGTTTATCCAAGTTGAATAAAAAATCTATGGATTCAGAAAGTGAAACATCTGATGATCTTGATAGGTCATCTGAAGATAGCAAGAGCAATACTGAGAGTACTGCCTCGGATACAGAAAGTGACTTGGAATCTGGGTCACAGAGTCAACATGGGCAATCAACAGCAGATGGATGCTTAGCTAATGATGAGGGTTCAGATTCTGTGACTGATGATCGTGAGTGGGGAGCTCGCATGACCAAATCAAGCTTGGTTCCTCCTGTTACGAGAAAATATGAAGTCATTCATGAATATGTTATTGTATCGCATGAAGAGGATGTAAAGCGGAAGATGCAGGTATCTTTGCCGGATGACTATGTTGAGAAGCTTTATTCGCAGAAGAATGGAACTGAGGAGTCTGATATGGAACTTCCTGAAGTCAAGGACTACAAGCCCAGGAAAATGCTTGGAGATGAGGTTCTAGAGCAAGAGGTTTATGGAATTGATCCCTACAGCCATAATCTTTTACTTGATTCCATGCCAGAGGAGTTGGATTGGCCTCTTTTAGAGAAGCATCTGTTTATAGAAGATGTGCTTCTTCGCACCCTGAATAAGCAAGTTAGACACTTTACTGGTACCGGAACTACTCCCATGATCTTTCCTTTGCGGCCTGTTGTCGAAGATATTCGGAAAACTGCAGAAGAGGATAGTGATATTCGAACTGTGAGAATGTGCCAGGGTATTTTGAAGGCCATAGACAGTCGCCCTGATGATAAATATGTTGCTTATAGAAAGGGGCTCGGCGTCGTTTGCAACAAAGAAGAAGGTTTTGGAGAAGAAGATTTTGTTGTGGAATTTTTGGGGGAGGTATATCCTGTTTGGAAATGGTATGAGAAGCAAGATGGGATTCGATCTCTGCAGAAAAACAGTAAAGATCCAGCTCCGGAATTTTACAACATTTATCTTGAAAGGCCCAAGGGTGATGCTGATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAAGCAAACTATGCAAGTAGAATTTGTCATTCGTGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTCGATGGTCGTTACCAGATCGGTATCTACACTGTACGTAAAATTCAATATGGTGAAGAGATCACATTTGACTACAACTCTGTTACGGAGAGTAAGGAAGAATATGAAGCATCAGTTTGTTTGTGTGGCAGTCAAGTTTGCCGGGGAAGTTACCTGAATTTGACAGGCGAAGGAGCATTCCTGAAGGTGCTGAAGGATTGGCATGGAATTCTGGATCGTCATCATCTAATGCTGGAAGCTTGCGAGTTAAATTCAGTAACTGAGGAGGATTATCTTGACCTGGGAAGAGCTGGTTTAGGCAATTGTTTGCTTGGTGGGTTGCCAGATTGGGTGATTGCATATTCAGCTCGTTTGGTGAGGTTCATAAACTTCGAAAGAACAAAGCTTCCTGAGGTGATTTTAAAGCACAACTTAGAAGAAAAGAGGAAGTATTTCTCAGATATATGTCTTGAGGTTGAGAAGAGTGACGCGGAGGTTCAGGCTGAGGGTGTGTTCAACCAAAGGCTTCAGAATTTGGCTGTTACTCTTGACAAGGTGAGGTATGTTATGAGCTCCATATTTGGCAACCCAAAGAATGCTCCACCTCCACTGGAGAGGTTAAGTCCAGAAGAAGCTGTTGGCTTTGTATGGAAGGGAGAAGGATCAGTTGTTGAGGAACTCCTTCAGAGCATGGCTCCTCATGTGGAGGAACAATTGCTAAATGATCTCAAGTCCAAGATGCTTGCTCATGATCCATTGGGTTCAGATGACATTTGGAAAGAACTTAAAAGATCGTTACTATGGTTGAGAGATGAGGTCCGGAATCTTCCATGTACATACAAGTCTCGGCATGACGCTGCTGCTGACTTGATCCATATTTATGCATACACAAGGTGCTACATTAGAATACGGGAATACAAATCAGTAACTTCACCGCCGGTTTACATTAGTCCACTTGACTTGGGCCCCAACTACACTAACAAATCGGGGGCAGATTTTCAGGAGTATTGCAAGACTTATGGGGAGAATTATTGTTTAGGGCAGCTAATTTTTTGGTATAATCAGTCTAATGCAGAGCCAGATTGTAGTATGGCTAGAGCAAGTAGGGGTTGCTTATCATTACCTGATATCGGTTCCTTCTATGCCAAGATTTCGAAACCTACACGGCAGCGTGTTTATGGTCCAAAGGCTGTCAAATTTATGCTTTCAAGGATGGAGAAGCAGCCGCAAAAACCTTGGCCCAAGGATCGAATATGGTCATTTAATAGCTCCCCAAAAGTTCTTGGCAGTCCAATGCTAGATGCTGTTGTGAATAACTCTTTCTTGGACAAAGAAATGTTGCATTGGTTAAAGCACAGACCTGCAATATATCAAGCTATGTGGGATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

2480

Amino Acids

280.99

Weight (kDa)

6.5

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GYF_ATXR3	PF25531	694 - 741	2.1e-29	Histone-lysine N-methyltransferase ATXR3, GYF domain
GYF_ATXR3	PF25531	1085 - 1116	2.1e-08	Histone-lysine N-methyltransferase ATXR3, GYF domain
SET	PF00856	1842 - 2050	1.2e-12	SET domain
SDG2_C	PF19633	2061 - 2480	1.7e-236	Protein SET DOMAIN GROUP 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15180
fragaria_vesca	FvH4_6g43760
malus_domestica	MD09G1103200.v1.1 MD17G1091000.v1.1
prunus_persica	Prupe.3G222600_v2.0.a1
pyrus_communis	pycom09g02660 pycom17g08780
rosa_chinensis	RchiOBHm_Chr2g0160501
rosa_laevigata	RLG00000021218
rosa_multiflora	Rmu_sc0000674.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089780
rosa_rugosa	Rorug02G0483400 Rorug02G0483400
rosa_samantha	Rh2AG548700 Rh2BG562400 Rh2CG533000 Rh2DG571100
rosa_wichuraiana	Rw2G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3588, 4545
Acc36I	ACCTGC	3 cut(s)	1246, 5329, 7420
Acc65I	GGTACC	2 cut(s)	1662, 5618
AccB1I	GGYRCC	2 cut(s)	1662, 5618
AccBSI	CCGCTC	3 cut(s)	1063, 1297, 1702
AccI	GTMKAC	2 cut(s)	954, 4011
AccII	CGCG	3 cut(s)	1524, 3043, 6542
AccIII	TCCGGA	6 cut(s)	64, 475, 610, 3363, 5926, 6870
AclI	AACGTT	1 cut(s)	4450
AcoI	YGGCCR	3 cut(s)	717, 1393, 1414
AcvI	CACGTG	3 cut(s)	1307, 1712, 4256
AcyI	GRCGYC	1 cut(s)	5787
AdeI	CACNNNGTG	3 cut(s)	1712, 1715, 6945
AfiI	CCNNNNNNNGG	4 cut(s)	1168, 2691, 3216, 7181
AflIII	ACRYGT	4 cut(s)	2050, 3675, 3889, 4799
AhlI	ACTAGT	1 cut(s)	2287
AjiI	CACGTC	1 cut(s)	1544
AjuI	GAANNNNNNNTTGG	6 cut(s)	4131, 4163, 5796, 5828, 6672, 6704
AloI	GAACNNNNNNTCC	8 cut(s)	2965, 2997, 4930, 4962, 5445, 5477, 6442, 6474
Alw21I	GWGCWC	5 cut(s)	2167, 2440, 3721, 5236, 6626
AlwNI	CAGNNNCTG	4 cut(s)	3526, 4228, 5207, 6332
Aor13HI	TCCGGA	6 cut(s)	64, 475, 610, 3363, 5926, 6870
ApaI	GGGCCC	1 cut(s)	7019
ArsI	GACNNNNNNTTYG	4 cut(s)	1270, 1302, 2415, 2447
AseI	ATTAAT	5 cut(s)	1890, 3639, 4089, 4755, 4776
Asp700I	GAANNNNTTC	7 cut(s)	471, 1189, 4143, 5286, 5667, 6503, 6732
Asp718I	GGTACC	2 cut(s)	1662, 5618
AspA2I	CCTAGG	1 cut(s)	1658
AspLEI	GCGC	4 cut(s)	79, 1353, 1779, 1798
AsuC2I	CCSGG	5 cut(s)	1721, 2057, 2373, 4433, 6215
AsuII	TTCGAA	3 cut(s)	5701, 6444, 7205
AvaII	GGWCC	9 cut(s)	1040, 1299, 1336, 1383, 3293, 4028, 4476, 6868, 7232
AvrII	CCTAGG	1 cut(s)	1658
AxyI	CCTNAGG	1 cut(s)	6462
BaeGI	GKGCMC	2 cut(s)	2346, 7019
BaeI	ACNNNNGTAYC	2 cut(s)	1646, 1679
BalI	TGGCCA	1 cut(s)	719
BamHI	GGATCC	1 cut(s)	1822
BanI	GGYRCC	2 cut(s)	1662, 5618
BanII	GRGCYC	7 cut(s)	2167, 2440, 3721, 5236, 5784, 6626, 7019
BauI	CACGAG	3 cut(s)	646, 1439, 3054
BbrPI	CACGTG	3 cut(s)	1307, 1712, 4256
BbsI	GAAGAC	6 cut(s)	77, 1239, 2835, 3753, 3843, 4815
Bbv12I	GWGCWC	5 cut(s)	2167, 2440, 3721, 5236, 6626
BbvCI	CCTCAGC	1 cut(s)	6555
BceAI	ACGGC	6 cut(s)	1338, 1380, 1401, 1596, 3856, 7232
BcgI	CGANNNNNNTGC	2 cut(s)	2694, 2728
BciVI	GTATCC	2 cut(s)	828, 5110
BclI	TGATCA	6 cut(s)	1327, 1621, 2176, 2581, 3328, 4845
BcnI	CCSGG	5 cut(s)	1721, 2057, 2373, 4433, 6215
BcuI	ACTAGT	1 cut(s)	2287
BfmI	CTRYAG	6 cut(s)	730, 3314, 3606, 5494, 5679, 5900
BfuAI	ACCTGC	3 cut(s)	1246, 5329, 7420
BfuI	GTATCC	2 cut(s)	828, 5110
BglII	AGATCT	7 cut(s)	1175, 1361, 1424, 1487, 1550, 1571, 1592
BlnI	CCTAGG	1 cut(s)	1658
BlpI	GCTNAGC	1 cut(s)	5182
BmcAI	AGTACT	4 cut(s)	358, 883, 1217, 5107
Bme18I	GGWCC	9 cut(s)	1040, 1299, 1336, 1383, 3293, 4028, 4476, 6868, 7232
BmgBI	CACGTC	1 cut(s)	1544
BmrI	ACTGGG	1 cut(s)	2349
BmuI	ACTGGG	1 cut(s)	2349
BoxI	GACNNNNGTC	1 cut(s)	1341
BpiI	GAAGAC	6 cut(s)	77, 1239, 2835, 3753, 3843, 4815
BplI	GAGNNNNNCTC	6 cut(s)	1139, 1171, 3070, 3102, 6730, 6762
BpmI	CTGGAG	6 cut(s)	926, 1607, 2283, 3988, 4767, 6683
Bpu10I	CCTNAGC	2 cut(s)	387, 6555
Bpu1102I	GCTNAGC	1 cut(s)	5182
Bpu14I	TTCGAA	3 cut(s)	5701, 6444, 7205
BpuEI	CTTGAG	5 cut(s)	2541, 3436, 3865, 6542, 6764
BpuMI	CCSGG	5 cut(s)	1721, 2057, 2373, 4433, 6215
Bsa29I	ATCGAT	1 cut(s)	2704
BsaAI	YACGTR	4 cut(s)	1307, 1712, 4256, 6110
BsaBI	GATNNNNATC	4 cut(s)	606, 4755, 6095, 6291
BsaHI	GRCGYC	1 cut(s)	5787
BsaI	GGTCTC	4 cut(s)	646, 1292, 1320, 2555
BsaXI	ACNNNNNCTCC	4 cut(s)	4930, 4960, 5445, 5475
Bsc4I	CCNNNNNNNGG	4 cut(s)	1168, 2691, 3216, 7181
Bse118I	RCCGGY	2 cut(s)	151, 6988
Bse21I	CCTNAGG	1 cut(s)	6462
Bse3DI	GCAATG	2 cut(s)	991, 3942
Bse8I	GATNNNNATC	4 cut(s)	606, 4755, 6095, 6291
BseAI	TCCGGA	6 cut(s)	64, 475, 610, 3363, 5926, 6870
BseCI	ATCGAT	1 cut(s)	2704
BseJI	GATNNNNATC	4 cut(s)	606, 4755, 6095, 6291
BseLI	CCNNNNNNNGG	4 cut(s)	1168, 2691, 3216, 7181
BseMI	GCAATG	2 cut(s)	991, 3942
BseRI	GAGGAG	8 cut(s)	27, 524, 547, 4951, 5411, 5543, 6350, 6738
BseSI	GKGCMC	2 cut(s)	2346, 7019
BseYI	CCCAGC	3 cut(s)	247, 3278, 3870
BsgI	GTGCAG	7 cut(s)	1835, 2007, 2403, 3468, 3512, 4021, 4729
Bsh1236I	CGCG	3 cut(s)	1524, 3043, 6542
BshNI	GGYRCC	2 cut(s)	1662, 5618
BshVI	ATCGAT	1 cut(s)	2704
BsiHKAI	GWGCWC	5 cut(s)	2167, 2440, 3721, 5236, 6626
BslFI	GGGAC	7 cut(s)	466, 787, 1285, 1369, 1976, 2039, 4014
BslI	CCNNNNNNNGG	4 cut(s)	1168, 2691, 3216, 7181
BsmBI	CGTCTC	1 cut(s)	1947
BsmFI	GGGAC	7 cut(s)	466, 787, 1285, 1369, 1976, 2039, 4014
BsmI	GAATGC	2 cut(s)	6248, 6652
Bso31I	GGTCTC	4 cut(s)	646, 1292, 1320, 2555
Bsp119I	TTCGAA	3 cut(s)	5701, 6444, 7205
Bsp120I	GGGCCC	1 cut(s)	7015
Bsp1286I	GDGCHC	8 cut(s)	2167, 2346, 2440, 3721, 5236, 5784, 6626, 7019
Bsp13I	TCCGGA	6 cut(s)	64, 475, 610, 3363, 5926, 6870
Bsp1407I	TGTACA	1 cut(s)	6884
Bsp1720I	GCTNAGC	1 cut(s)	5182
Bsp68I	TCGCGA	1 cut(s)	1524
BspDI	ATCGAT	1 cut(s)	2704
BspEI	TCCGGA	6 cut(s)	64, 475, 610, 3363, 5926, 6870
BspFNI	CGCG	3 cut(s)	1524, 3043, 6542
BspHI	TCATGA	4 cut(s)	3565, 4587, 5290, 6799
BspMAI	CTGCAG	3 cut(s)	3610, 5683, 5904
BspMI	ACCTGC	3 cut(s)	1246, 5329, 7420
BspQI	GCTCTTC	2 cut(s)	1995, 6352
BspT104I	TTCGAA	3 cut(s)	5701, 6444, 7205
BspT107I	GGYRCC	2 cut(s)	1662, 5618
BspTNI	GGTCTC	4 cut(s)	646, 1292, 1320, 2555
BsrBI	CCGCTC	3 cut(s)	1063, 1297, 1702
BsrDI	GCAATG	2 cut(s)	991, 3942
BsrFI	RCCGGY	2 cut(s)	151, 6988
BsrGI	TGTACA	1 cut(s)	6884
BssAI	RCCGGY	2 cut(s)	151, 6988
BssNI	GRCGYC	1 cut(s)	5787
BssSI	CACGAG	3 cut(s)	646, 1439, 3054
BssT1I	CCWWGG	9 cut(s)	204, 312, 660, 1658, 4023, 4620, 5958, 7286, 7293
Bst2BI	CACGAG	3 cut(s)	646, 1439, 3054
BstACI	GRCGYC	1 cut(s)	5787
BstAPI	GCANNNNNTGC	3 cut(s)	2390, 3526, 6017
BstAUI	TGTACA	1 cut(s)	6884
BstBAI	YACGTR	4 cut(s)	1307, 1712, 4256, 6110
BstBI	TTCGAA	3 cut(s)	5701, 6444, 7205
BstDSI	CCRYGG	4 cut(s)	1827, 3019, 3041, 3632
BstEII	GGTNACC	3 cut(s)	1704, 1715, 3158
BstFNI	CGCG	3 cut(s)	1524, 3043, 6542
BstHHI	GCGC	4 cut(s)	79, 1353, 1779, 1798
BstNSI	RCATGY	8 cut(s)	24, 28, 2054, 3006, 3189, 3555, 3679, 3893
BstPAI	GACNNNNGTC	1 cut(s)	1341
BstPI	GGTNACC	3 cut(s)	1704, 1715, 3158
BstSFI	CTRYAG	6 cut(s)	730, 3314, 3606, 5494, 5679, 5900
BstSLI	GKGCMC	2 cut(s)	2346, 7019
BstSNI	TACGTA	1 cut(s)	6110
BstUI	CGCG	3 cut(s)	1524, 3043, 6542
BstV2I	GAAGAC	6 cut(s)	77, 1239, 2835, 3753, 3843, 4815
BstXI	CCANNNNNNTGG	2 cut(s)	699, 4804
Bsu15I	ATCGAT	1 cut(s)	2704
Bsu36I	CCTNAGG	1 cut(s)	6462
BsuI	GTATCC	2 cut(s)	828, 5110
BsuTUI	ATCGAT	1 cut(s)	2704
BtgI	CCRYGG	4 cut(s)	1827, 3019, 3041, 3632
BtgZI	GCGATG	2 cut(s)	21, 3144
BtrI	CACGTC	1 cut(s)	1544
BtsI	GCAGTG	3 cut(s)	979, 1882, 3361
BtuMI	TCGCGA	1 cut(s)	1524
BveI	ACCTGC	3 cut(s)	1246, 5329, 7420
CaiI	CAGNNNCTG	4 cut(s)	3526, 4228, 5207, 6332
CciI	TCATGA	4 cut(s)	3565, 4587, 5290, 6799
CfoI	GCGC	4 cut(s)	79, 1353, 1779, 1798
Cfr10I	RCCGGY	2 cut(s)	151, 6988
Cfr42I	CCGCGG	1 cut(s)	3044
ClaI	ATCGAT	1 cut(s)	2704
CseI	GACGC	3 cut(s)	5776, 6548, 6914
CspCI	CAANNNNNGTGG	3 cut(s)	6993, 7028, 7412
DraI	TTTAAA	2 cut(s)	1101, 6474
DraIII	CACNNNGTG	3 cut(s)	1712, 1715, 6945
EaeI	YGGCCR	3 cut(s)	717, 1393, 1414
EciI	GGCGGA	1 cut(s)	502
Ecl136II	GAGCTC	5 cut(s)	2165, 2438, 3719, 5234, 6624
Eco105I	TACGTA	1 cut(s)	6110
Eco130I	CCWWGG	9 cut(s)	204, 312, 660, 1658, 4023, 4620, 5958, 7286, 7293
Eco147I	AGGCCT	1 cut(s)	3320
Eco24I	GRGCYC	7 cut(s)	2167, 2440, 3721, 5236, 5784, 6626, 7019
Eco31I	GGTCTC	4 cut(s)	646, 1292, 1320, 2555
Eco32I	GATATC	2 cut(s)	4696, 7180
Eco47I	GGWCC	9 cut(s)	1040, 1299, 1336, 1383, 3293, 4028, 4476, 6868, 7232
Eco53kI	GAGCTC	5 cut(s)	2165, 2438, 3719, 5234, 6624
Eco72I	CACGTG	3 cut(s)	1307, 1712, 4256
Eco81I	CCTNAGG	1 cut(s)	6462
Eco91I	GGTNACC	3 cut(s)	1704, 1715, 3158
EcoICRI	GAGCTC	5 cut(s)	2165, 2438, 3719, 5234, 6624
EcoO109I	RGGNCCY	4 cut(s)	1383, 3293, 4028, 7016
EcoO65I	GGTNACC	3 cut(s)	1704, 1715, 3158
EcoRI	GAATTC	3 cut(s)	638, 1843, 6279
EcoRV	GATATC	2 cut(s)	4696, 7180
EcoT14I	CCWWGG	9 cut(s)	204, 312, 660, 1658, 4023, 4620, 5958, 7286, 7293
EcoT22I	ATGCAT	6 cut(s)	26, 3004, 3191, 4987, 6006, 6937
EcoT38I	GRGCYC	7 cut(s)	2167, 2440, 3721, 5236, 5784, 6626, 7019
ErhI	CCWWGG	9 cut(s)	204, 312, 660, 1658, 4023, 4620, 5958, 7286, 7293
Esp3I	CGTCTC	1 cut(s)	1947
FalI	AAGNNNNNCTT	8 cut(s)	3058, 3090, 4131, 4163, 5562, 5594, 6467, 6499
FaqI	GGGAC	7 cut(s)	466, 787, 1285, 1369, 1976, 2039, 4014
FauI	CCCGC	2 cut(s)	757, 1087
FauNDI	CATATG	8 cut(s)	1369, 1411, 1432, 1453, 1474, 1495, 1537, 1558
FbaI	TGATCA	6 cut(s)	1327, 1621, 2176, 2581, 3328, 4845
FblI	GTMKAC	2 cut(s)	954, 4011
FriOI	GRGCYC	7 cut(s)	2167, 2440, 3721, 5236, 5784, 6626, 7019
GlaI	GCGC	4 cut(s)	78, 1352, 1778, 1797
GsaI	CCCAGC	3 cut(s)	251, 3282, 3874
GsuI	CTGGAG	6 cut(s)	926, 1607, 2283, 3988, 4767, 6683
HgaI	GACGC	3 cut(s)	5776, 6548, 6914
HhaI	GCGC	4 cut(s)	79, 1353, 1779, 1798
Hin1I	GRCGYC	1 cut(s)	5787
Hin6I	GCGC	4 cut(s)	77, 1351, 1777, 1796
HinP1I	GCGC	4 cut(s)	77, 1351, 1777, 1796
HincII	GTYRAC	3 cut(s)	2643, 2785, 5153
HindII	GTYRAC	3 cut(s)	2643, 2785, 5153
HindIII	AAGCTT	6 cut(s)	1112, 3560, 5251, 5369, 6309, 6455
Hpy99I	CGWCG	2 cut(s)	407, 5792
Hsp92I	GRCGYC	1 cut(s)	5787
HspAI	GCGC	4 cut(s)	77, 1351, 1777, 1796
KflI	GGGWCCC	1 cut(s)	4028
Kpn2I	TCCGGA	6 cut(s)	64, 475, 610, 3363, 5926, 6870
KpnI	GGTACC	2 cut(s)	1666, 5622
Ksp22I	TGATCA	6 cut(s)	1327, 1621, 2176, 2581, 3328, 4845
KspI	CCGCGG	1 cut(s)	3044
LguI	GCTCTTC	2 cut(s)	1995, 6352
MbiI	CCGCTC	3 cut(s)	1063, 1297, 1702
MfeI	CAATTG	3 cut(s)	3242, 6373, 6764
MhlI	GDGCHC	8 cut(s)	2167, 2346, 2440, 3721, 5236, 5784, 6626, 7019
MlsI	TGGCCA	1 cut(s)	719
MluNI	TGGCCA	1 cut(s)	719
MmeI	TCCRAC	4 cut(s)	2413, 2467, 3645, 5514
Mox20I	TGGCCA	1 cut(s)	719
Mph1103I	ATGCAT	6 cut(s)	26, 3004, 3191, 4987, 6006, 6937
MroI	TCCGGA	6 cut(s)	64, 475, 610, 3363, 5926, 6870
MroXI	GAANNNNTTC	7 cut(s)	471, 1189, 4143, 5286, 5667, 6503, 6732
MscI	TGGCCA	1 cut(s)	719
MslI	CAYNNNNRTG	7 cut(s)	1983, 2568, 2618, 3354, 4052, 5295, 6930
Msp20I	TGGCCA	1 cut(s)	719
MspA1I	CMGCKG	1 cut(s)	3043
MunI	CAATTG	3 cut(s)	3242, 6373, 6764
Mva1269I	GAATGC	2 cut(s)	6248, 6652
MvnI	CGCG	3 cut(s)	1524, 3043, 6542
NciI	CCSGG	5 cut(s)	1721, 2057, 2373, 4433, 6215
NdeI	CATATG	8 cut(s)	1369, 1411, 1432, 1453, 1474, 1495, 1537, 1558
NmeAIII	GCCGAG	4 cut(s)	349, 4694, 5763, 6877
NruI	TCGCGA	1 cut(s)	1524
NsiI	ATGCAT	6 cut(s)	26, 3004, 3191, 4987, 6006, 6937
NspI	RCATGY	8 cut(s)	24, 28, 2054, 3006, 3189, 3555, 3679, 3893
NspV	TTCGAA	3 cut(s)	5701, 6444, 7205
PaeI	GCATGC	2 cut(s)	24, 28
PagI	TCATGA	4 cut(s)	3565, 4587, 5290, 6799
PceI	AGGCCT	1 cut(s)	3320
PciI	ACATGT	3 cut(s)	2050, 3675, 3889
PciSI	GCTCTTC	2 cut(s)	1995, 6352
PctI	GAATGC	2 cut(s)	6248, 6652
PdmI	GAANNNNTTC	7 cut(s)	471, 1189, 4143, 5286, 5667, 6503, 6732
PmaCI	CACGTG	3 cut(s)	1307, 1712, 4256
PmlI	CACGTG	3 cut(s)	1307, 1712, 4256
Ppu21I	YACGTR	4 cut(s)	1307, 1712, 4256, 6110
PpuMI	RGGWCCY	3 cut(s)	1383, 3293, 4028
PscI	ACATGT	3 cut(s)	2050, 3675, 3889
PshAI	GACNNNNGTC	1 cut(s)	1341
PshBI	ATTAAT	5 cut(s)	1890, 3639, 4089, 4755, 4776
PsiI	TTATAA	2 cut(s)	3588, 4545
Psp124BI	GAGCTC	5 cut(s)	2167, 2440, 3721, 5236, 6626
Psp1406I	AACGTT	1 cut(s)	4450
Psp5II	RGGWCCY	3 cut(s)	1383, 3293, 4028
PspCI	CACGTG	3 cut(s)	1307, 1712, 4256
PspEI	GGTNACC	3 cut(s)	1704, 1715, 3158
PspFI	CCCAGC	3 cut(s)	247, 3278, 3870
PspOMI	GGGCCC	1 cut(s)	7015
PspPPI	RGGWCCY	3 cut(s)	1383, 3293, 4028
PstI	CTGCAG	3 cut(s)	3610, 5683, 5904
PstNI	CAGNNNCTG	4 cut(s)	3526, 4228, 5207, 6332
RruI	TCGCGA	1 cut(s)	1524
RseI	CAYNNNNRTG	7 cut(s)	1983, 2568, 2618, 3354, 4052, 5295, 6930
SacI	GAGCTC	5 cut(s)	2167, 2440, 3721, 5236, 6626
SacII	CCGCGG	1 cut(s)	3044
SapI	GCTCTTC	2 cut(s)	1995, 6352
ScaI	AGTACT	4 cut(s)	358, 883, 1217, 5107
SduI	GDGCHC	8 cut(s)	2167, 2346, 2440, 3721, 5236, 5784, 6626, 7019
SfcI	CTRYAG	6 cut(s)	730, 3314, 3606, 5494, 5679, 5900
Sfr303I	CCGCGG	1 cut(s)	3044
SfuI	TTCGAA	3 cut(s)	5701, 6444, 7205
SgrBI	CCGCGG	1 cut(s)	3044
SinI	GGWCC	9 cut(s)	1040, 1299, 1336, 1383, 3293, 4028, 4476, 6868, 7232
SmiMI	CAYNNNNRTG	7 cut(s)	1983, 2568, 2618, 3354, 4052, 5295, 6930
SmlI	CTYRAG	5 cut(s)	2556, 3451, 3844, 6521, 6779
SmoI	CTYRAG	5 cut(s)	2556, 3451, 3844, 6521, 6779
SnaBI	TACGTA	1 cut(s)	6110
SpeI	ACTAGT	1 cut(s)	2287
SphI	GCATGC	2 cut(s)	24, 28
SseBI	AGGCCT	1 cut(s)	3320
SstI	GAGCTC	5 cut(s)	2167, 2440, 3721, 5236, 6626
StuI	AGGCCT	1 cut(s)	3320
StyI	CCWWGG	9 cut(s)	204, 312, 660, 1658, 4023, 4620, 5958, 7286, 7293
TaqII	GACCGA	2 cut(s)	3078, 3177
TatI	WGTACW	9 cut(s)	356, 881, 966, 978, 1215, 3678, 4386, 5105, 6884
TauI	GCSGC	4 cut(s)	1755, 3043, 5653, 7279
TspGWI	ACGGA	5 cut(s)	1503, 1621, 1850, 3621, 6173
VpaK11BI	GGWCC	9 cut(s)	1040, 1299, 1336, 1383, 3293, 4028, 4476, 6868, 7232
VspI	ATTAAT	5 cut(s)	1890, 3639, 4089, 4755, 4776
XbaI	TCTAGA	3 cut(s)	1375, 2404, 5464
XceI	RCATGY	8 cut(s)	24, 28, 2054, 3006, 3189, 3555, 3679, 3893
XcmI	CCANNNNNNNNNTGG	2 cut(s)	760, 5251
XmaJI	CCTAGG	1 cut(s)	1658
XmiI	GTMKAC	2 cut(s)	954, 4011
XmnI	GAANNNNTTC	7 cut(s)	471, 1189, 4143, 5286, 5667, 6503, 6732
ZrmI	AGTACT	4 cut(s)	358, 883, 1217, 5107
Zsp2I	ATGCAT	6 cut(s)	26, 3004, 3191, 4987, 6006, 6937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.