Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013012

Physical Location & Seq

Genomic Coordinates Reverse (-)

70874131 .. 70886782

Gene Structure 12652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG533000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 7425 bp

ATGGGCGATGGAGGAGTCGCATGCATGCCTTTGCAGCATAATATCATGGACAGGTTTCCAATTCCGGAGAAGACTGCGCTTTGCGGAGGCAATACTAATACTAATGCTACTACTACTACTACCACCGCTAACAATGGCTTCAATTCCAAGCCGGTTGTTAAGAAGAAGGTAATGAAGATCAAGAAGAGGATTGTCAAGAAGCCCAAGGCGAAAAGCAACAGTAACGTAGAGTCGGGGAAGAGTGAGCTGGGATTGGTTAAAGGTGAGAAGAGTGATACTACTAAGGAAGCAGAGAACAGTGGCGCTGCCAAGGAAGCAGCGGAGAAGAGTGGTGTGAAGGAAGCCGAGAAGGGTGCTGTAAAGGAAGCTGAGAACAGTGCTGCTCAGCAAGTTGAGAACGTCGAAAATAATGGTGAGGATAAGAAGGAGGAAGTGGAAGAGGGTGAATTGGGGACTTTGAATGGTGAATTTGTTCCGGACAAGTGGCGGAGAAGCGAGGTTGAGAAGGAGGAGATTGGGGGTGAGAAATGGAGGAGAAGCGAGGTGGAGAAGGGAGAGTCTTTTTCTGGGAAATGGCGTAGAGGTGATGCAGAGAAGGCAGATATATATCCGGAGAAGAGTAGAAATAGTGAAGCTGAATTCGGCTCGTGGAGACCACCCAAGGATGAAATTGAAAGAGGTGAGTATATTCCAGATAGATGGCAAAAAGGAGAGCTGGCCAGAGATGACTACAGTAACCGAAAAATGCCCGCCAGGTACGATATGGGTGGGAGGGGCAGGGGAAGGGGCTGGAAATTTGAGTCCCCTTCTGGCAAGTATCCAAATGATGACGGGTTTAGAAGGAAAGAATATAGTAGAGGTGGGGGTCAGCACAGCAAGAGTACTTTCAGGTGGGATAGTGGCCAGGAGAGGAATACAAGGATCAGTTCCAAAATTGTTGATGATGAGGGTGTCTACAAGAATGAGTACAGCAGTGAGTACAGCAATGGTAAGTATCAAGCAAAGGATTACTCTTCTGTTAATCGGTTGAAGAGGTATGGTCCTGATTCAAATAGTAGTGAGCGGAAGCACTATGGAGATTATGGGGATTATGCGGGTTTAAAAAGTCGCAAGCTTTCTGATGAAAGTAATCGCTCTGCTCACTCTGAGCATTATTCACACCGTTCTGGGGAGAGATCTTATCGAAATCCTTCTTTTAGACCAGCATCAGACAAGTACTCTTCCAGGCACTATGAACCTGCTTTGTCTTCCAGAGTGGTTTATGACAGGCATGGGCGAAGTCCAGGTCTCTCTGAGCGGTCCCCACGTGACAGGTCCCGGTATTATGATCACCTGGACCGGAGTCCAGTGCGCCGTGAGAGATCTCCATATGATCTAGAGAGGTCCCCTTATGGCCGTGAGAAATCACCATATGGCCGTGAGAGATCTCCATATGTTCATGAGAAATCTCCATATGTTCGTGACAAATCTCCATATGTTCGCGACAAGTCTCCATATGCTCGCGAGAAGTCACCATATGGACGTGAAAGATCTCCATATGTTCGTGACAGATCTCCTTATGTTCTGGAGAGATCTCCATACGAACGGAGCCGTAATTATGATCACAGAAACCGCAGTTTATCTCCACAAGATCGACCTAGGCACCATGATCGCAGGGATCACACCCCAAACTATTTGGAGCGGTCACCACGTGGTGACCGGGGTAGAGCTTCTAGTTATAGAGGTACAGGCCGCAAAAGTGGAGCAAGTGATAGGCGCAACTCCCAATATAAAGCGCACGAAGATAAGCTGGTGCAGAAGGATCCCACGGGAACGGACTCAAATTCCTCTGCCAAAGAATGTCAGGATAGAAGCAGTGTTCTTGACATTAATGGAACTGTGGAGACAAACGCCAATTCTGAGTCTCACAAAGAAGAACCGTCTCAAAGTCCAAATATAAATTGCAAAGAAACTTCTCATATTAGTGCAGCCCCCCCTGAAGAGCTGCCTTCTATGGAAGAAGATATGGATATATGCGACACACCACCACATGTCCCAGTGATTGCTGATTCATCCACAGGGAAATGGTTTTACCTTGATTATTATGGTGTGGAATGTGGGCCTTCCAAATTATGTGAGCTTAAAGCACTTGTTGTAGAAGGAGCTCTGATGTCTGATCACATGGTCAAGCACTCAGACAGTGATAGGTGGGTAACTGTTGAAAATGCAGTTTCGCCATTGATTACCGTAAATTTTCCATCCATTGTATCGGACTCGATAACTGGACTAGTAAGCCCTCCAGAAGCTCCTGGCAATCTATTGGCAGATATTGGACATACTGGGCACTATGGTACTCAGAGTGGGAGTTTGCCGGGGTTGTGTGCAGATGTTGCTTCTGAGCCTCTAGAAGATTTGCACATTGAAGAAAGGGTTGGGGCTCTGATGGAAGGTTTAACAGTTATTCCTGGCAGGGAACTTGAAGCTGTTGGAGAAGTTCTGCAAATGTCATTTGAATCTGCTCAACTGGAAGTATGGGGAAACAGTGAAGGTCTCTCTCAAGGTCATATCGGTGAACAGAATGATCAGAAAACTGAGGAACCACGATTTTCTGACATTAAAATGAAAGAAGCAGCAGAAATAGGGTTGACTTTACCCTCTGACAAAGATGCTTTTGCTTGTGGTGATTCCGGTGACTGGTTTTCTGGTCGATGGTCATGCAAGGGTGGTGATTGGAAAAGGAACGAAGAAGGTGTGCAAGATAGGTCTTCTAGAAAGAAACTTGTTGTCAATGATGGTTTCCCATTATGCCAGATGTCAAAATCTGGGTATGAAGACCCTCGATGGCAAAGAAAAGATGAACTGTATTATCCTTCACAGAACAGAAGGCTTGATCTACCTACTTGGGCTTTTTCATGTCCAGATGATGCTAATAGAGTGTCTCAAAGTAAGCCAACTGTTATAAAAGGAGTAAAAGGAACTATCCTTCCAGTAGTCAAGATAAATGCATGTGTTGTAAAAGACCACGGTTCATTTGTTTCTGAGCCGCGGATAAAAGCACGAGGAATGGAAAGGCATCCTTCGAGGTCTGCTCGGTCATATTCCGCAAGTAGTGATGGCAAGAGATCATCTGGCGATGGTGATTCTCAAATGAAACCAGTAGGTGACCGAGGCTCAAAGGGATCTTCCAAATGCGTTTCCTCCATTAAAATCCCCAAAGACCGTATTGGCACAGTTGATGACTTGCAATTGCATTTGGGAGACTGGTACTACCTTGATGGTGCTGGGCATGAACGAGGACCTTCATCATTCTCTGAGCTACAGGCCTTAGTTGATCAAGGAGTGATCCTGAAACATAGCAGTGTGTTCCGGAAATTTGATAAAGTCTGGGTTCCAGTTACCTCTGCCATTGAGACTTCTGATGCTACCAAAATGAATAAGGAGAAGAACAGAACCTCAAGTAATTTTTCAGGGCAATCTCAAAGTGCTACACTTGCTGAATCAAAAACAAATTTGAGTTGGTTGCAGAATCTGCACCCTCAGTTCATTGGTTATACATGCGGAAAGCTTCATGAATTGGTGATGAAATCTTATAAAAGTCGGGAGTTTGCTGCAGCCATAAATGAGGTTTTAGATCCATGGATTAATGCAAGGCAGCCAAAAAAAGAGTTGGAAAAGCACATGTACTGGAAAGCAGACAGTGATGCACGTTCTTCTAAAAGAACTCGGTTGCTGGTTGATGAAAGTGAAGAAGACTATGACGCAGAAGAGGACTTGCAAACAATAGAAAAGGATGAATCCGCATTTGAGGATCTAATTGGTAATGCTTCTTTCTTCAGAGAAGACGGCTTGAGTTATGGATCAGAGATGGCAAGCTGGGGTTTATTGGATGGACCTGTACTGGCACGGGTCTTTCATTTTTTAAGATTAGACATGAAATCTCTTACCGTTGCTTCTCTGACTTGTAAGCACTGGAGAGCTGCGGTCAGTTTTTACAAGGATATTTCAACACAGGTAGACTTGTCATCCTTGGGTCCCAACTGCACCGACTCCATGATTGTGAAGATTATGAGTGGTTATGGCAAAGAGAAGATTAATTCTATGGTTCTAATTGGTTGCACAAACATCACTCCCCACACTCTTGAAGAGATTCTTGGTTCACTTCCTTGTCTATCTACCATAGATATTAGGGGTTGCAACCAGTTTGGTGAGTTGGTCATTAAATTTCAGAACCTGAACTGGATTAAGAGCCGAAGCTCACGTGGTACAAAGATACATGATGAATCCAATTCAAAATTAAGGAGTCTGAAATATATCAGTGAGAAATCTTCTTATGTATCGAGAAGTAAGGTTCTGGGTAATGATATGGATGATTTTAGTGAACTCAAAGTGTACTTTGATAGTGTGGATAAGAGAGACTCAGCTAATCAATCATTCCGGGGAAGTTTATACAAACGTTCAAAACTATTTGATGCTAGACGGTCCTCATCCATTCTATCTAGGGATGCTCGTATGAGGCGGTTGTCCATTAAGAAATCAGAAAATGGTTATAAGAGGATGGAGGAATTTGTTGCTTCAAGTCTGAAGGACATCATGAAGGAGAATACATCTGATTTCTTTGTACCCAAGGTTGCTGAAATTCAAGATAGAATGAGAAATGGGTATTACATTCGCCGAGGATTGAGTTCTGTGAAGGAGGATATCAGTCGAATGTGCAGGGATGCAATTAAAGCAAAGAATCGTGGTGAAGCTGGAGATATTAATCACCTGAATCACATTATTAATTTGTTTATACAACTTGCCACACGTTTGGAAGGGGCTTCCAAGTCTTCTGATGCAAGGGATGAGCTGATCAAGTCGTGGGAAGATGATACATTTGCAGGGGTTTCTTCTGCCTCCAAGAGTAAAAAGAAGCTCAATAAGACATCTGAAAGGAAGTTGAGGAGTAATGGTTCCTTTATGAATGGTAGTGTGGATAATGGAGAATATGCATCTGATCGAGAAATCAGAAGGCGTTTATCCAAGTTGAATAAAAAATCTATGGATTCAGAAAGTGAAACATCTGATGATCTTGATAGGTCATCTGAAGATAGCAAGAGCAATACTGAGAGTACTGCCTCGGATACAGAAAGTGACTTGGAATCTGGGTCACAGAGTCAACCTGGGCAATCAACAGCAGATGGATGCGTAGCTCATGATGAGGGTTCAGATTCTGTGACTGATGATCGTGAGTGGGGAGCTCGCATGACCAAATCAAGCTTGGTTCCTCCTGTTACGAGAAAATATGAAGTCATTCATGAATATGTTATTGTATCGCATGAAGAGGATGTAAAGCGGAAGATGCAGGTATCTTTGCCGGATGACTATGTTGAGAAGCTTTTTTCGCAGAAGAATGGAACTGAGGAGTCTGATATGGAACTTCCTGAAGTCAAGGACTACAAGCCCAGGAAAATGCTTGGAGATGAGGTTCTAGAGCAAGAGGTTTATGGAATTGATCCCTACAGCCATAATCTTATACTTGATTCCATGCCAGAGGAGTTGGATTGGCCTCTTTTAGAGAAGCATCTGTTTATAGAAGATGTGCTTCTTCGCACCCTGAATAAGCAAGTTAGACACTTTACTGGTACCGGAACTACTCCCATGATCTATCCTTTGCGGCCCGTTGTTGAAGATATTCGGAAAACTGCGGAAGAGGATAGTGATATTCGAACTGTGAGAATGTGCCAGGGTATTCTGAAGGCCATAGACAGTCGCCCTGATGATAAATATGTTGCTTATAGAAAGGGGCTCGGCGTCGTTTGCAACAAAGAAGAAGGTTTTGGAGAAGAAGATTTTGTTGTGGAATTTTTGGGGGAGGTATATCCTGTTTGGAAATGGTATGAGAAGCAAGATGGGATTCGATCTCTGCAGAAAAACAGTAAAGATCCAGCTCCGGAATTTTACAACATTTATCTTGAAAGGCCCAAGGGTGATGCTGATGGGTATGATTTAGTTGTTGTTGATGCCATGCATAAAGCAAACTATGCAAGTAGAATTTGTCACTCGTGCCGACCTAATTGTGAAGCAAAAGTTACTGCTGTCGATGGTCGTTACCAGATCGGTATCTACACTGTACGTAAAATTCAATATGGTGAAGAGATCACATTTGACTACAACTCTGTTACGGAGAGTAAGGAAGAATATGAAGCATCAGTTTGTTTGTGTGGCAGTCAAGTTTGCCGGGGAAGTTACCTGAATTTGACAGGCGAAGGAGCATTCCTGAAGGTGCTGAAGGATTGGCATGGAATTCTGGATCGTCATCATCTAATGCTGGAAGCTTGCGAGTTAAATTCAGTATCTGAGGAGGATTATCTTGACCTGGGAAGAGCTGGTTTAGGCAATTGTTTGCTTGGTGGGTTGCCAGATTGGGTGATTGCATATTCAGCTCGTTTGGTGAGGTTCATAAACTTCGAAAGAACAAAGCTTCCTGAGGTGATTTTAAAGCACAACTTAGAAGAAAAGAGGAAGTATTTCTCAGATATATGTCTTGAGGTTGAGAAGAGTGACGCGGAGGTTCAGGCTGAGGGTGTGTTCAACCAAAGGCTTCAGAACTTGGCTGTTACTCTTGACAAGGTGAGGTATGTTATGAGCTCCGTATTTGGCAACCCAAAGAATGCTCCACCTCCACTGGAGAGGTTAAGTCCAGAAGAAGCTGTTGGCTTTGTATGGAAGGGAGAAGGATCAGTTGTTGAGGAACTCCTTCAGAGCATGGCTCCTCATGTGGAGGAACAATTGCTAAATGATCTCAAGTCCAAGATGCTTGCTCATGATCCATCGAGTTCAGATGACATTTGGAAAGAACTTAAAAGATCGTTACTATGGTTGAGAGATGAGGTCCGGAATCTTCCATGTACATACAAGTCTCGGCATGACGCTGCTGCTGACTTGATCCATATTTATGCATACACAAGGTGCTACATTAGAATACGGGAATACAAATCAGTAACTTCACCACCGGTTTACATTAGTCCACTTGACTTGGGCCCCAACTACACTAACAAATCGGGGGCAGATTTTCAGGAGTATTGCAAGACTTACGGGGAGAATTATTGTTTAGGGCAGCTATTTTTTTGGTATAATCAGTCTAATGCAGAGCCAGATTGTAGTATGGCTAGAGCAAGTAGGGGTTGCTTATCATTACCTGATATCGGTTCCTTCTATGCCAAGATTTCGAAACCTACACGGCAGCGTGTTTATGGTCCAAAGGCTGTCAAATTTATGCTTTCAAGGATGGAGAAGCAGCCCCAAAAACCTTGGCCCAAGGATCGAATATGGTCATTTAATAGCTCCCCAAAAGTTCTTGGCAGTCCAATGCTAGATGCTGTTGTGAATAACTCTTTCTTGGACAAAGAAATGTTGCATTGGTTAAAGCACAGACCTGCAATATATCAAGCTATGTGGGATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

2474

Amino Acids

280.04

Weight (kDa)

6.53

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GYF_ATXR3	PF25531	687 - 734	2.7e-28	Histone-lysine N-methyltransferase ATXR3, GYF domain
GYF_ATXR3	PF25531	1079 - 1110	7.9e-08	Histone-lysine N-methyltransferase ATXR3, GYF domain
SET	PF00856	1897 - 2044	1.3e-12	SET domain
SDG2_C	PF19633	2055 - 2474	7.9e-237	Protein SET DOMAIN GROUP 2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15180
fragaria_vesca	FvH4_6g43760
malus_domestica	MD09G1103200.v1.1 MD17G1091000.v1.1
prunus_persica	Prupe.3G222600_v2.0.a1
pyrus_communis	pycom09g02660 pycom17g08780
rosa_chinensis	RchiOBHm_Chr2g0160501
rosa_laevigata	RLG00000021218
rosa_multiflora	Rmu_sc0000674.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089780
rosa_rugosa	Rorug02G0483400 Rorug02G0483400
rosa_samantha	Rh2AG548700 Rh2BG562400 Rh2CG533000 Rh2DG571100
rosa_wichuraiana	Rw2G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	2939, 3570, 4527
Acc36I	ACCTGC	3 cut(s)	1246, 5311, 7402
Acc65I	GGTACC	1 cut(s)	5600
AccB1I	GGYRCC	2 cut(s)	1641, 5600
AccBSI	CCGCTC	3 cut(s)	1063, 1297, 1681
AccI	GTMKAC	2 cut(s)	954, 3993
AccII	CGCG	4 cut(s)	1482, 1503, 3025, 6524
AccIII	TCCGGA	6 cut(s)	64, 475, 610, 3345, 5908, 6852
AclI	AACGTT	1 cut(s)	4432
AcoI	YGGCCR	4 cut(s)	717, 901, 1393, 1414
AcvI	CACGTG	3 cut(s)	1307, 1691, 4238
AcyI	GRCGYC	1 cut(s)	5769
AdeI	CACNNNGTG	3 cut(s)	1691, 1694, 6927
AfiI	CCNNNNNNNGG	3 cut(s)	1168, 2673, 7163
AflIII	ACRYGT	3 cut(s)	2029, 3657, 4781
AgeI	ACCGGT	1 cut(s)	6970
AhlI	ACTAGT	1 cut(s)	2266
AjiI	CACGTC	1 cut(s)	1523
AjuI	GAANNNNNNNTTGG	8 cut(s)	2394, 2426, 4113, 4145, 5778, 5810, 6654, 6686
AloI	GAACNNNNNNTCC	8 cut(s)	2947, 2979, 4912, 4944, 5427, 5459, 6424, 6456
Alw21I	GWGCWC	3 cut(s)	2146, 5218, 6608
AlwNI	CAGNNNCTG	4 cut(s)	3508, 4210, 5189, 6314
Aor13HI	TCCGGA	6 cut(s)	64, 475, 610, 3345, 5908, 6852
ApaI	GGGCCC	1 cut(s)	7001
ArsI	GACNNNNNNTTYG	2 cut(s)	1270, 1302
AseI	ATTAAT	5 cut(s)	1869, 3621, 4071, 4737, 4758
AsiGI	ACCGGT	1 cut(s)	6970
Asp700I	GAANNNNTTC	7 cut(s)	471, 1189, 4125, 5268, 5649, 6485, 6714
Asp718I	GGTACC	1 cut(s)	5600
AspA2I	CCTAGG	1 cut(s)	1637
AspLEI	GCGC	5 cut(s)	79, 305, 1353, 1758, 1777
AsuC2I	CCSGG	5 cut(s)	1318, 1700, 2352, 4415, 6197
AsuII	TTCGAA	3 cut(s)	5683, 6426, 7187
AvrII	CCTAGG	1 cut(s)	1637
AxyI	CCTNAGG	1 cut(s)	6444
BaeGI	GKGCMC	2 cut(s)	2325, 7001
BalI	TGGCCA	2 cut(s)	719, 903
BamHI	GGATCC	1 cut(s)	1801
BanI	GGYRCC	2 cut(s)	1641, 5600
BanII	GRGCYC	6 cut(s)	2146, 2419, 5218, 5766, 6608, 7001
BauI	CACGAG	3 cut(s)	646, 3036, 6019
BbrPI	CACGTG	3 cut(s)	1307, 1691, 4238
BbsI	GAAGAC	7 cut(s)	77, 1239, 2736, 2817, 3735, 3825, 4797
Bbv12I	GWGCWC	3 cut(s)	2146, 5218, 6608
BbvCI	CCTCAGC	1 cut(s)	6537
BceAI	ACGGC	6 cut(s)	1338, 1380, 1401, 1575, 3838, 7214
BcgI	CGANNNNNNTGC	6 cut(s)	335, 369, 1631, 1665, 2676, 2710
BciVI	GTATCC	2 cut(s)	828, 5092
BclI	TGATCA	6 cut(s)	1327, 1600, 2155, 2560, 3310, 4827
BcnI	CCSGG	5 cut(s)	1318, 1700, 2352, 4415, 6197
BcuI	ACTAGT	1 cut(s)	2266
BfmI	CTRYAG	5 cut(s)	730, 3296, 3588, 5476, 5882
BfoI	RGCGCY	1 cut(s)	306
BfuAI	ACCTGC	3 cut(s)	1246, 5311, 7402
BfuI	GTATCC	2 cut(s)	828, 5092
BglII	AGATCT	6 cut(s)	1175, 1361, 1424, 1529, 1550, 1571
BlnI	CCTAGG	1 cut(s)	1637
BlpI	GCTNAGC	1 cut(s)	384
BmcAI	AGTACT	3 cut(s)	883, 1217, 5089
BmgBI	CACGTC	1 cut(s)	1523
BmrI	ACTGGG	2 cut(s)	2030, 2328
BmuI	ACTGGG	2 cut(s)	2030, 2328
BoxI	GACNNNNGTC	1 cut(s)	1341
BpiI	GAAGAC	7 cut(s)	77, 1239, 2736, 2817, 3735, 3825, 4797
BplI	GAGNNNNNCTC	4 cut(s)	3052, 3084, 6712, 6744
BpmI	CTGGAG	5 cut(s)	1586, 2262, 3970, 4749, 6665
Bpu10I	CCTNAGC	1 cut(s)	6537
Bpu1102I	GCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	3 cut(s)	5683, 6426, 7187
BpuEI	CTTGAG	5 cut(s)	2520, 3418, 3847, 6524, 6746
BpuMI	CCSGG	5 cut(s)	1318, 1700, 2352, 4415, 6197
BsaAI	YACGTR	4 cut(s)	1307, 1691, 4238, 6092
BsaBI	GATNNNNATC	4 cut(s)	606, 4737, 6077, 6273
BsaHI	GRCGYC	1 cut(s)	5769
BsaI	GGTCTC	3 cut(s)	646, 1292, 2534
BsaXI	ACNNNNNCTCC	4 cut(s)	4912, 4942, 5427, 5457
Bsc4I	CCNNNNNNNGG	3 cut(s)	1168, 2673, 7163
Bse118I	RCCGGY	2 cut(s)	151, 6970
Bse21I	CCTNAGG	1 cut(s)	6444
Bse3DI	GCAATG	1 cut(s)	991
Bse8I	GATNNNNATC	4 cut(s)	606, 4737, 6077, 6273
BseAI	TCCGGA	6 cut(s)	64, 475, 610, 3345, 5908, 6852
BseJI	GATNNNNATC	4 cut(s)	606, 4737, 6077, 6273
BseLI	CCNNNNNNNGG	3 cut(s)	1168, 2673, 7163
BseMI	GCAATG	1 cut(s)	991
BseRI	GAGGAG	8 cut(s)	27, 524, 547, 4933, 5393, 5525, 6332, 6720
BseSI	GKGCMC	2 cut(s)	2325, 7001
BseYI	CCCAGC	3 cut(s)	247, 3260, 3852
BsgI	GTGCAG	6 cut(s)	1814, 1986, 2382, 3494, 4003, 4711
Bsh1236I	CGCG	4 cut(s)	1482, 1503, 3025, 6524
BshNI	GGYRCC	2 cut(s)	1641, 5600
BshTI	ACCGGT	1 cut(s)	6970
BsiHKAI	GWGCWC	3 cut(s)	2146, 5218, 6608
BslFI	GGGAC	7 cut(s)	466, 787, 1285, 1300, 1369, 2018, 3996
BslI	CCNNNNNNNGG	3 cut(s)	1168, 2673, 7163
BsmBI	CGTCTC	1 cut(s)	1926
BsmFI	GGGAC	7 cut(s)	466, 787, 1285, 1300, 1369, 2018, 3996
BsmI	GAATGC	2 cut(s)	6230, 6634
Bso31I	GGTCTC	3 cut(s)	646, 1292, 2534
Bsp119I	TTCGAA	3 cut(s)	5683, 6426, 7187
Bsp120I	GGGCCC	1 cut(s)	6997
Bsp1286I	GDGCHC	7 cut(s)	2146, 2325, 2419, 5218, 5766, 6608, 7001
Bsp13I	TCCGGA	6 cut(s)	64, 475, 610, 3345, 5908, 6852
Bsp1407I	TGTACA	1 cut(s)	6866
Bsp1720I	GCTNAGC	1 cut(s)	384
Bsp19I	CCATGG	1 cut(s)	3614
Bsp68I	TCGCGA	2 cut(s)	1482, 1503
BspEI	TCCGGA	6 cut(s)	64, 475, 610, 3345, 5908, 6852
BspFNI	CGCG	4 cut(s)	1482, 1503, 3025, 6524
BspHI	TCATGA	6 cut(s)	1438, 3547, 4569, 5170, 5272, 6781
BspMAI	CTGCAG	2 cut(s)	3592, 5886
BspMI	ACCTGC	3 cut(s)	1246, 5311, 7402
BspQI	GCTCTTC	2 cut(s)	1974, 6334
BspT104I	TTCGAA	3 cut(s)	5683, 6426, 7187
BspT107I	GGYRCC	2 cut(s)	1641, 5600
BspTNI	GGTCTC	3 cut(s)	646, 1292, 2534
BsrBI	CCGCTC	3 cut(s)	1063, 1297, 1681
BsrDI	GCAATG	1 cut(s)	991
BsrFI	RCCGGY	2 cut(s)	151, 6970
BsrGI	TGTACA	1 cut(s)	6866
BssAI	RCCGGY	2 cut(s)	151, 6970
BssNI	GRCGYC	1 cut(s)	5769
BssSI	CACGAG	3 cut(s)	646, 3036, 6019
Bst2BI	CACGAG	3 cut(s)	646, 3036, 6019
BstACI	GRCGYC	1 cut(s)	5769
BstAPI	GCANNNNNTGC	3 cut(s)	2369, 3508, 5999
BstAUI	TGTACA	1 cut(s)	6866
BstBAI	YACGTR	4 cut(s)	1307, 1691, 4238, 6092
BstBI	TTCGAA	3 cut(s)	5683, 6426, 7187
BstDSI	CCRYGG	4 cut(s)	1806, 3001, 3023, 3614
BstEII	GGTNACC	3 cut(s)	1683, 1694, 3140
BstFNI	CGCG	4 cut(s)	1482, 1503, 3025, 6524
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	5 cut(s)	79, 305, 1353, 1758, 1777
BstNSI	RCATGY	6 cut(s)	24, 28, 2033, 2988, 3537, 3661
BstPAI	GACNNNNGTC	1 cut(s)	1341
BstPI	GGTNACC	3 cut(s)	1683, 1694, 3140
BstSFI	CTRYAG	5 cut(s)	730, 3296, 3588, 5476, 5882
BstSLI	GKGCMC	2 cut(s)	2325, 7001
BstSNI	TACGTA	1 cut(s)	6092
BstUI	CGCG	4 cut(s)	1482, 1503, 3025, 6524
BstV2I	GAAGAC	7 cut(s)	77, 1239, 2736, 2817, 3735, 3825, 4797
BstXI	CCANNNNNNTGG	2 cut(s)	699, 4786
Bsu36I	CCTNAGG	1 cut(s)	6444
BsuI	GTATCC	2 cut(s)	828, 5092
BtgI	CCRYGG	4 cut(s)	1806, 3001, 3023, 3614
BtgZI	GCGATG	2 cut(s)	21, 3126
BtrI	CACGTC	1 cut(s)	1523
BtsI	GCAGTG	3 cut(s)	979, 1861, 3343
BtuMI	TCGCGA	2 cut(s)	1482, 1503
BveI	ACCTGC	3 cut(s)	1246, 5311, 7402
CaiI	CAGNNNCTG	4 cut(s)	3508, 4210, 5189, 6314
CciI	TCATGA	6 cut(s)	1438, 3547, 4569, 5170, 5272, 6781
CfoI	GCGC	5 cut(s)	79, 305, 1353, 1758, 1777
Cfr10I	RCCGGY	2 cut(s)	151, 6970
Cfr42I	CCGCGG	1 cut(s)	3026
CseI	GACGC	4 cut(s)	3746, 5758, 6530, 6896
CspAI	ACCGGT	1 cut(s)	6970
CspCI	CAANNNNNGTGG	3 cut(s)	6975, 7010, 7394
DraI	TTTAAA	2 cut(s)	1101, 6456
DraIII	CACNNNGTG	3 cut(s)	1691, 1694, 6927
EaeI	YGGCCR	4 cut(s)	717, 901, 1393, 1414
EciI	GGCGGA	1 cut(s)	502
Ecl136II	GAGCTC	3 cut(s)	2144, 5216, 6606
Eco105I	TACGTA	1 cut(s)	6092
Eco147I	AGGCCT	1 cut(s)	3302
Eco24I	GRGCYC	6 cut(s)	2146, 2419, 5218, 5766, 6608, 7001
Eco31I	GGTCTC	3 cut(s)	646, 1292, 2534
Eco32I	GATATC	2 cut(s)	4678, 7162
Eco53kI	GAGCTC	3 cut(s)	2144, 5216, 6606
Eco72I	CACGTG	3 cut(s)	1307, 1691, 4238
Eco81I	CCTNAGG	1 cut(s)	6444
Eco91I	GGTNACC	3 cut(s)	1683, 1694, 3140
EcoICRI	GAGCTC	3 cut(s)	2144, 5216, 6606
EcoO109I	RGGNCCY	5 cut(s)	1314, 1383, 3275, 4010, 6998
EcoO65I	GGTNACC	3 cut(s)	1683, 1694, 3140
EcoRI	GAATTC	2 cut(s)	638, 6261
EcoRV	GATATC	2 cut(s)	4678, 7162
EcoT22I	ATGCAT	5 cut(s)	26, 2986, 4969, 5988, 6919
EcoT38I	GRGCYC	6 cut(s)	2146, 2419, 5218, 5766, 6608, 7001
Esp3I	CGTCTC	1 cut(s)	1926
FalI	AAGNNNNNCTT	8 cut(s)	3040, 3072, 4113, 4145, 5544, 5576, 6449, 6481
FaqI	GGGAC	7 cut(s)	466, 787, 1285, 1300, 1369, 2018, 3996
FauI	CCCGC	2 cut(s)	757, 1087
FauNDI	CATATG	8 cut(s)	1369, 1411, 1432, 1453, 1474, 1495, 1516, 1537
FbaI	TGATCA	6 cut(s)	1327, 1600, 2155, 2560, 3310, 4827
FblI	GTMKAC	2 cut(s)	954, 3993
FriOI	GRGCYC	6 cut(s)	2146, 2419, 5218, 5766, 6608, 7001
GlaI	GCGC	5 cut(s)	78, 304, 1352, 1757, 1776
GsaI	CCCAGC	3 cut(s)	251, 3264, 3856
GsuI	CTGGAG	5 cut(s)	1586, 2262, 3970, 4749, 6665
HaeII	RGCGCY	1 cut(s)	306
HgaI	GACGC	4 cut(s)	3746, 5758, 6530, 6896
HhaI	GCGC	5 cut(s)	79, 305, 1353, 1758, 1777
Hin1I	GRCGYC	1 cut(s)	5769
Hin6I	GCGC	5 cut(s)	77, 303, 1351, 1756, 1775
HinP1I	GCGC	5 cut(s)	77, 303, 1351, 1756, 1775
HincII	GTYRAC	2 cut(s)	2625, 5135
HindII	GTYRAC	2 cut(s)	2625, 5135
HindIII	AAGCTT	6 cut(s)	1112, 3542, 5233, 5351, 6291, 6437
Hpy99I	CGWCG	2 cut(s)	404, 5774
Hsp92I	GRCGYC	1 cut(s)	5769
HspAI	GCGC	5 cut(s)	77, 303, 1351, 1756, 1775
KflI	GGGWCCC	1 cut(s)	4010
Kpn2I	TCCGGA	6 cut(s)	64, 475, 610, 3345, 5908, 6852
KpnI	GGTACC	1 cut(s)	5604
Ksp22I	TGATCA	6 cut(s)	1327, 1600, 2155, 2560, 3310, 4827
KspI	CCGCGG	1 cut(s)	3026
LguI	GCTCTTC	2 cut(s)	1974, 6334
MbiI	CCGCTC	3 cut(s)	1063, 1297, 1681
MfeI	CAATTG	3 cut(s)	3224, 6355, 6746
MhlI	GDGCHC	7 cut(s)	2146, 2325, 2419, 5218, 5766, 6608, 7001
MlsI	TGGCCA	2 cut(s)	719, 903
MluNI	TGGCCA	2 cut(s)	719, 903
MmeI	TCCRAC	3 cut(s)	2446, 3627, 5496
Mox20I	TGGCCA	2 cut(s)	719, 903
Mph1103I	ATGCAT	5 cut(s)	26, 2986, 4969, 5988, 6919
MroI	TCCGGA	6 cut(s)	64, 475, 610, 3345, 5908, 6852
MroXI	GAANNNNTTC	7 cut(s)	471, 1189, 4125, 5268, 5649, 6485, 6714
MscI	TGGCCA	2 cut(s)	719, 903
MslI	CAYNNNNRTG	7 cut(s)	1962, 2547, 2597, 3336, 4034, 5277, 6912
Msp20I	TGGCCA	2 cut(s)	719, 903
MspA1I	CMGCKG	2 cut(s)	320, 3025
MunI	CAATTG	3 cut(s)	3224, 6355, 6746
Mva1269I	GAATGC	2 cut(s)	6230, 6634
MvnI	CGCG	4 cut(s)	1482, 1503, 3025, 6524
NciI	CCSGG	5 cut(s)	1318, 1700, 2352, 4415, 6197
NcoI	CCATGG	1 cut(s)	3614
NdeI	CATATG	8 cut(s)	1369, 1411, 1432, 1453, 1474, 1495, 1516, 1537
NmeAIII	GCCGAG	4 cut(s)	370, 4676, 5745, 6859
NruI	TCGCGA	2 cut(s)	1482, 1503
NsiI	ATGCAT	5 cut(s)	26, 2986, 4969, 5988, 6919
NspI	RCATGY	6 cut(s)	24, 28, 2033, 2988, 3537, 3661
NspV	TTCGAA	3 cut(s)	5683, 6426, 7187
PaeI	GCATGC	2 cut(s)	24, 28
PagI	TCATGA	6 cut(s)	1438, 3547, 4569, 5170, 5272, 6781
PceI	AGGCCT	1 cut(s)	3302
PciI	ACATGT	2 cut(s)	2029, 3657
PciSI	GCTCTTC	2 cut(s)	1974, 6334
PctI	GAATGC	2 cut(s)	6230, 6634
PdmI	GAANNNNTTC	7 cut(s)	471, 1189, 4125, 5268, 5649, 6485, 6714
PinAI	ACCGGT	1 cut(s)	6970
PmaCI	CACGTG	3 cut(s)	1307, 1691, 4238
PmlI	CACGTG	3 cut(s)	1307, 1691, 4238
Ppu21I	YACGTR	4 cut(s)	1307, 1691, 4238, 6092
PpuMI	RGGWCCY	4 cut(s)	1314, 1383, 3275, 4010
PscI	ACATGT	2 cut(s)	2029, 3657
PshAI	GACNNNNGTC	1 cut(s)	1341
PshBI	ATTAAT	5 cut(s)	1869, 3621, 4071, 4737, 4758
PsiI	TTATAA	3 cut(s)	2939, 3570, 4527
Psp124BI	GAGCTC	3 cut(s)	2146, 5218, 6608
Psp1406I	AACGTT	1 cut(s)	4432
Psp5II	RGGWCCY	4 cut(s)	1314, 1383, 3275, 4010
PspCI	CACGTG	3 cut(s)	1307, 1691, 4238
PspEI	GGTNACC	3 cut(s)	1683, 1694, 3140
PspFI	CCCAGC	3 cut(s)	247, 3260, 3852
PspOMI	GGGCCC	1 cut(s)	6997
PspPPI	RGGWCCY	4 cut(s)	1314, 1383, 3275, 4010
PstI	CTGCAG	2 cut(s)	3592, 5886
PstNI	CAGNNNCTG	4 cut(s)	3508, 4210, 5189, 6314
RruI	TCGCGA	2 cut(s)	1482, 1503
RseI	CAYNNNNRTG	7 cut(s)	1962, 2547, 2597, 3336, 4034, 5277, 6912
SacI	GAGCTC	3 cut(s)	2146, 5218, 6608
SacII	CCGCGG	1 cut(s)	3026
SapI	GCTCTTC	2 cut(s)	1974, 6334
ScaI	AGTACT	3 cut(s)	883, 1217, 5089
SduI	GDGCHC	7 cut(s)	2146, 2325, 2419, 5218, 5766, 6608, 7001
SfcI	CTRYAG	5 cut(s)	730, 3296, 3588, 5476, 5882
Sfr303I	CCGCGG	1 cut(s)	3026
SfuI	TTCGAA	3 cut(s)	5683, 6426, 7187
SgrBI	CCGCGG	1 cut(s)	3026
SmiMI	CAYNNNNRTG	7 cut(s)	1962, 2547, 2597, 3336, 4034, 5277, 6912
SmlI	CTYRAG	5 cut(s)	2535, 3433, 3826, 6503, 6761
SmoI	CTYRAG	5 cut(s)	2535, 3433, 3826, 6503, 6761
SnaBI	TACGTA	1 cut(s)	6092
SpeI	ACTAGT	1 cut(s)	2266
SphI	GCATGC	2 cut(s)	24, 28
SseBI	AGGCCT	1 cut(s)	3302
SstI	GAGCTC	3 cut(s)	2146, 5218, 6608
StuI	AGGCCT	1 cut(s)	3302
TaqII	GACCGA	2 cut(s)	3060, 3159
TatI	WGTACW	9 cut(s)	881, 966, 978, 1215, 3660, 3874, 4368, 5087, 6866
TauI	GCSGC	3 cut(s)	1734, 3025, 5635
TspGWI	ACGGA	4 cut(s)	1600, 1829, 6155, 6598
VspI	ATTAAT	5 cut(s)	1869, 3621, 4071, 4737, 4758
XbaI	TCTAGA	4 cut(s)	1375, 2383, 2747, 5446
XceI	RCATGY	6 cut(s)	24, 28, 2033, 2988, 3537, 3661
XcmI	CCANNNNNNNNNTGG	2 cut(s)	760, 5233
XmaJI	CCTAGG	1 cut(s)	1637
XmiI	GTMKAC	2 cut(s)	954, 3993
XmnI	GAANNNNTTC	7 cut(s)	471, 1189, 4125, 5268, 5649, 6485, 6714
ZrmI	AGTACT	3 cut(s)	883, 1217, 5089
Zsp2I	ATGCAT	5 cut(s)	26, 2986, 4969, 5988, 6919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.