Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013012

Physical Location & Seq

Genomic Coordinates Forward (+)

1977877 .. 1980014

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02660.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGCAAAGCAGCCAAAGAAAGAGGTGGAGAAGCATATGTACTGGAAAACATGTTGATGCCCGTATTGCCAAGAGAGCCCGGTTGCTGGTTGATGAAAGTGAAGATGACTATGACATGGGAGATGATTTGCTAACAGTTGAAAAGGATGAATCCACATTTGAGGATCTATGTGGTGATGCTTCTTTCTACACAGAAGAGAGTAGGAGTTATGGCTCAGAGACGGGAAGCTGGGGTTTATTAGATGGGCAAGTGCTGGCGCGAATCTTTCATTTTCTGAGATTAGACATGAATTCCCTTACCTTTGCTTCTATGACCTGTAAGCACTGGAGAGCTGCTGTGAGGTTTTATAAGGATATTTCAAGACAGGTTGATTTTTCATCCTTGGGTCCCAACTGCACTGATTCCGTGATTGTGAACATTATGAGTGGTTACGGCAAAGAAAAGATTAACTCTATGGTTCTGATTGGTTGCACCAACATCACCCCGCACACTCTTGAAGAGATCCTTAGTTCACTTCCTTGTTTATCTACCATAGATATCAGAGGTTGCAACCAGTTTGGCGAGTTGGTAATTAAGTTTCAGAATCTGAACTGGATTAAGAGCCAAAGTTCATCTGGTACGAAGATATTTGAGGAATCCCATTCGAAAATTAGGAGTCTGAAACAGATCAGTGAGAAATCTTCATCTGTTTCTAGAAGTAAGGTTCTAGGCAATGATATGGATGATTTTAGTGAACTGAAAGTGTACTTCGATAGCGTGGATAAGAGAGAGACTGCAAATCTCTCATTCCGGGGAAGTTTATACAAACGTTCAAAACTATTTGATGCTAGACGGTCCTCATCCATTCTATCTAGGGATGCTCGCATGAGGCGGTTGTCCATTAAGAAATCTGAACATGGTTACAAGAAGATGGAAGAATTTGTTGCTTCAAGTCTGAAGGATATCATGAAGGAGAATACCTATGATTTCTTTGTGCCCAAGGTTGCTGAAATTCAGGATAGAATGAGAAATGGTCATTACATACGCCGGGGATTGAGTTCTGTGAAGGAGGATATCAGTCGAATGTGCAGGGATGCAATAAAAGCAAAGAATCGGGGGGATGCTGGAGACATGAATCACATTATAACATTGTTTATTCAACTTGCCACACGTTTAGAAGCTGCTTCTAAGTCTTCTCATGAAAGAGATGAGTTGATTAAGTCATGGGAAGATGATACATTTGCAGGGTTCTCTTCATCCTCCAAGTGTAGAAAGAAGCTCAGTAAAGTAGCTACTGAAAGGAAGTACTCGAATAGGAGTAATGGCACTGTGAATGGTAGTATGGATTATGGAGAGTATGCATCTGATCGAGAAATCAGAAGGCGTTTATCCAGATTGAATAAAAAATCTATGGATTCAGAAAGTGAAACATCTGATGATATGGACAAGTCTTCTGAATATAGCAAGAGCAATAGTGATAGTACTTCTTCCGATACAGAAAGTGACACCGAATTGAAGTCACAAAGTCAAACGGGGCAGTCAAGAGCAGATGGAAGCTTTACACCTGATGAGGGTTTTGATTCTATGACTGATGATCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

527

Amino Acids

59.77

Weight (kDa)

7.55

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15180
fragaria_vesca	FvH4_6g43760
malus_domestica	MD09G1103200.v1.1 MD17G1091000.v1.1
prunus_persica	Prupe.3G222600_v2.0.a1
pyrus_communis	pycom09g02660 pycom17g08780
rosa_chinensis	RchiOBHm_Chr2g0160501
rosa_laevigata	RLG00000021218
rosa_multiflora	Rmu_sc0000674.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089780
rosa_rugosa	Rorug02G0483400 Rorug02G0483400
rosa_samantha	Rh2AG548700 Rh2BG562400 Rh2CG533000 Rh2DG571100
rosa_wichuraiana	Rw2G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	348, 1124
AccII	CGCG	1 cut(s)	259
AciI	CCGC	2 cut(s)	485, 871
AclI	AACGTT	1 cut(s)	808
AclWI	GGATC	2 cut(s)	171, 496
AcsI	RAATTY	3 cut(s)	289, 917, 990
AcuI	CTGAAG	1 cut(s)	956
AfaI	GTAC	5 cut(s)	40, 619, 746, 1286, 1462
AfiI	CCNNNNNNNGG	2 cut(s)	85, 1550
AflIII	ACRYGT	2 cut(s)	49, 1148
AgsI	TTSAA	8 cut(s)	140, 360, 497, 813, 930, 1139, 1378, 1495
AluBI	AGCT	6 cut(s)	228, 332, 1160, 1258, 1271, 1536
AluI	AGCT	6 cut(s)	228, 332, 1160, 1258, 1271, 1536
Alw26I	GTCTC	3 cut(s)	212, 764, 1101
AlwI	GGATC	2 cut(s)	171, 496
AlwNI	CAGNNNCTG	1 cut(s)	586
ApeKI	GCWGC	3 cut(s)	9, 332, 1160
ApoI	RAATTY	3 cut(s)	289, 917, 990
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	386, 834
AsuC2I	CCSGG	3 cut(s)	79, 791, 1028
AsuHPI	GGTGA	2 cut(s)	185, 472
AsuII	TTCGAA	1 cut(s)	644
AvaII	GGWCC	2 cut(s)	386, 834
BaeGI	GKGCMC	1 cut(s)	978
BanII	GRGCYC	1 cut(s)	79
BarI	GAAGNNNNNNTAC	2 cut(s)	22, 54
BbsI	GAAGAC	2 cut(s)	1164, 1422
BbvI	GCAGC	3 cut(s)	21, 319, 1147
BccI	CCATC	3 cut(s)	236, 904, 1523
BceAI	ACGGC	1 cut(s)	448
BcnI	CCSGG	3 cut(s)	79, 791, 1028
BcoDI	GTCTC	3 cut(s)	212, 764, 1101
BfaI	CTAG	4 cut(s)	693, 707, 828, 852
BisI	GCNGC	3 cut(s)	10, 333, 1161
BlsI	GCNGC	3 cut(s)	11, 334, 1162
BmcAI	AGTACT	2 cut(s)	1286, 1462
Bme1390I	CCNGG	3 cut(s)	79, 791, 1028
Bme18I	GGWCC	2 cut(s)	386, 834
BmgT120I	GGNCC	2 cut(s)	386, 834
BmiI	GGNNCC	2 cut(s)	387, 388
BmrFI	CCNGG	3 cut(s)	79, 791, 1028
BmsI	GCATC	7 cut(s)	46, 166, 814, 847, 1063, 1090, 1349
BpiI	GAAGAC	2 cut(s)	1164, 1422
BpmI	CTGGAG	2 cut(s)	346, 1125
Bpu14I	TTCGAA	1 cut(s)	644
BpuMI	CCSGG	3 cut(s)	79, 791, 1028
Bsa29I	ATCGAT	1 cut(s)	1576
BsaJI	CCNNGG	4 cut(s)	381, 790, 978, 1027
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 1550
Bse1I	ACTGG	4 cut(s)	46, 329, 553, 596
Bse3DI	GCAATG	1 cut(s)	718
BseCI	ATCGAT	1 cut(s)	1576
BseDI	CCNNGG	4 cut(s)	381, 790, 978, 1027
BseGI	GGATG	8 cut(s)	151, 377, 727, 839, 862, 1078, 1105, 1235
BseLI	CCNNNNNNNGG	2 cut(s)	85, 1550
BseMI	GCAATG	1 cut(s)	718
BseMII	CTCAG	3 cut(s)	228, 266, 1273
BseNI	ACTGG	4 cut(s)	46, 329, 553, 596
BseSI	GKGCMC	1 cut(s)	978
BseXI	GCAGC	3 cut(s)	21, 319, 1147
BseYI	CCCAGC	1 cut(s)	228
BsgI	GTGCAG	2 cut(s)	379, 1087
Bsh1236I	CGCG	1 cut(s)	259
BshVI	ATCGAT	1 cut(s)	1576
BsiSI	CCGG	3 cut(s)	79, 790, 1027
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	85, 1550
BsmAI	GTCTC	3 cut(s)	212, 764, 1101
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	372
Bsp119I	TTCGAA	1 cut(s)	644
Bsp1286I	GDGCHC	2 cut(s)	79, 978
Bsp143I	GATC	5 cut(s)	163, 501, 666, 1345, 1573
BspACI	CCGC	2 cut(s)	485, 871
BspCNI	CTCAG	3 cut(s)	227, 267, 1272
BspDI	ATCGAT	1 cut(s)	1576
BspFNI	CGCG	1 cut(s)	259
BspHI	TCATGA	2 cut(s)	945, 1177
BspLI	GGNNCC	2 cut(s)	387, 388
BspPI	GGATC	2 cut(s)	171, 496
BspT104I	TTCGAA	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	718
BsrI	ACTGG	4 cut(s)	46, 329, 553, 596
BssECI	CCNNGG	4 cut(s)	381, 790, 978, 1027
BssMI	GATC	5 cut(s)	163, 501, 666, 1345, 1573
BssT1I	CCWWGG	2 cut(s)	381, 978
Bst4CI	ACNGT	3 cut(s)	136, 834, 1309
Bst6I	CTCTTC	3 cut(s)	189, 492, 1237
BstBI	TTCGAA	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	255, 862
BstDEI	CTNAG	5 cut(s)	214, 275, 506, 1167, 1259
BstF5I	GGATG	8 cut(s)	151, 377, 727, 839, 862, 1078, 1105, 1235
BstFNI	CGCG	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	5 cut(s)	166, 504, 669, 1348, 1576
BstMAI	GTCTC	3 cut(s)	212, 764, 1101
BstMBI	GATC	5 cut(s)	163, 501, 666, 1345, 1573
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 74, 1082
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	3 cut(s)	77, 789, 1026
BstSLI	GKGCMC	1 cut(s)	978
BstUI	CGCG	1 cut(s)	259
BstV1I	GCAGC	3 cut(s)	21, 319, 1147
BstV2I	GAAGAC	2 cut(s)	1164, 1422
BstX2I	RGATCY	2 cut(s)	163, 501
BstYI	RGATCY	2 cut(s)	163, 501
Bsu15I	ATCGAT	1 cut(s)	1576
BsuTUI	ATCGAT	1 cut(s)	1576
BtsCI	GGATG	8 cut(s)	151, 377, 727, 839, 862, 1078, 1105, 1235
BtsIMutI	CAGTG	4 cut(s)	322, 396, 676, 1305
Cac8I	GCNNGC	2 cut(s)	255, 862
CaiI	CAGNNNCTG	1 cut(s)	586
CciI	TCATGA	2 cut(s)	945, 1177
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	386, 834
ClaI	ATCGAT	1 cut(s)	1576
Csp6I	GTAC	5 cut(s)	39, 618, 745, 1285, 1461
CviAII	CATG	9 cut(s)	50, 115, 286, 865, 896, 946, 1111, 1178, 1203
CviQI	GTAC	5 cut(s)	39, 618, 745, 1285, 1461
DdeI	CTNAG	5 cut(s)	214, 275, 506, 1167, 1259
DpnI	GATC	5 cut(s)	165, 503, 668, 1347, 1575
DpnII	GATC	5 cut(s)	163, 501, 666, 1345, 1573
Eam1104I	CTCTTC	3 cut(s)	189, 492, 1237
EarI	CTCTTC	3 cut(s)	189, 492, 1237
Eco130I	CCWWGG	2 cut(s)	381, 978
Eco24I	GRGCYC	1 cut(s)	79
Eco32I	GATATC	3 cut(s)	538, 943, 1054
Eco47I	GGWCC	2 cut(s)	386, 834
Eco57I	CTGAAG	1 cut(s)	956
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRI	GAATTC	1 cut(s)	289
EcoRV	GATATC	3 cut(s)	538, 943, 1054
EcoT14I	CCWWGG	2 cut(s)	381, 978
EcoT22I	ATGCAT	1 cut(s)	1342
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	381, 978
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	9 cut(s)	53, 118, 289, 868, 899, 949, 1114, 1181, 1206
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	9 cut(s)	49, 114, 285, 864, 895, 945, 1110, 1177, 1202
FauI	CCCGC	1 cut(s)	492
FauNDI	CATATG	1 cut(s)	35
Fnu4HI	GCNGC	3 cut(s)	10, 333, 1161
FokI	GGATG	8 cut(s)	158, 364, 734, 826, 869, 1085, 1112, 1222
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	3 cut(s)	10, 333, 1161
FspBI	CTAG	4 cut(s)	693, 707, 828, 852
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	3 cut(s)	10, 333, 1161
GsaI	CCCAGC	1 cut(s)	232
GsuI	CTGGAG	2 cut(s)	346, 1125
HapII	CCGG	3 cut(s)	79, 790, 1027
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	9 cut(s)	53, 118, 289, 868, 899, 949, 1114, 1181, 1206
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HindIII	AAGCTT	1 cut(s)	1534
HpaII	CCGG	3 cut(s)	79, 790, 1027
HphI	GGTGA	2 cut(s)	185, 472
Hpy166II	GTNNAC	4 cut(s)	415, 512, 734, 745
Hpy188III	TCNNGA	9 cut(s)	360, 494, 693, 946, 995, 1178, 1349, 1371, 1521
Hpy8I	GTNNAC	4 cut(s)	415, 512, 734, 745
HpyAV	CCTTC	4 cut(s)	931, 943, 1039, 1353
HpyCH4III	ACNGT	3 cut(s)	136, 834, 1309
HpyCH4IV	ACGT	2 cut(s)	808, 1150
HpyCH4V	TGCA	9 cut(s)	4, 396, 471, 549, 776, 1068, 1076, 1223, 1340
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 74, 1082
HpyF3I	CTNAG	5 cut(s)	214, 275, 506, 1167, 1259
HpySE526I	ACGT	2 cut(s)	808, 1150
Hsp92II	CATG	9 cut(s)	53, 118, 289, 868, 899, 949, 1114, 1181, 1206
HspAI	GCGC	1 cut(s)	257
KflI	GGGWCCC	1 cut(s)	386
Kzo9I	GATC	5 cut(s)	163, 501, 666, 1345, 1573
Lsp1109I	GCAGC	3 cut(s)	21, 319, 1147
LweI	GCATC	7 cut(s)	46, 166, 814, 847, 1063, 1090, 1349
MaeI	CTAG	4 cut(s)	693, 707, 828, 852
MaeII	ACGT	2 cut(s)	808, 1150
MaeIII	GTNAC	4 cut(s)	428, 899, 1481, 1497
MalI	GATC	5 cut(s)	165, 503, 668, 1347, 1575
MboI	GATC	5 cut(s)	163, 501, 666, 1345, 1573
MflI	RGATCY	2 cut(s)	163, 501
MhlI	GDGCHC	2 cut(s)	79, 978
MluCI	AATT	6 cut(s)	289, 570, 648, 917, 990, 1490
MlyI	GAGTC	1 cut(s)	664
Mph1103I	ATGCAT	1 cut(s)	1342
MseI	TTAA	5 cut(s)	447, 573, 597, 882, 1197
MslI	CAYNNNNRTG	1 cut(s)	54
MspI	CCGG	3 cut(s)	79, 790, 1027
MspR9I	CCNGG	3 cut(s)	79, 791, 1028
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	3 cut(s)	65, 74, 1082
NciI	CCSGG	3 cut(s)	79, 791, 1028
NdeI	CATATG	1 cut(s)	35
NdeII	GATC	5 cut(s)	163, 501, 666, 1345, 1573
NlaIII	CATG	9 cut(s)	53, 118, 289, 868, 899, 949, 1114, 1181, 1206
NlaIV	GGNNCC	2 cut(s)	387, 388
NmuCI	GTSAC	2 cut(s)	1481, 1497
NsiI	ATGCAT	1 cut(s)	1342
NspI	RCATGY	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	644
PagI	TCATGA	2 cut(s)	945, 1177
PciI	ACATGT	1 cut(s)	49
PfeI	GAWTC	9 cut(s)	149, 261, 401, 583, 635, 1090, 1114, 1394, 1559
PkrI	GCNGC	3 cut(s)	11, 334, 1162
PleI	GAGTC	1 cut(s)	663
PpsI	GAGTC	1 cut(s)	663
PpuMI	RGGWCCY	1 cut(s)	386
PscI	ACATGT	1 cut(s)	49
PsiI	TTATAA	2 cut(s)	348, 1124
Psp1406I	AACGTT	1 cut(s)	808
Psp5II	RGGWCCY	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	387, 388
PspPI	GGNCC	2 cut(s)	386, 834
PspPPI	RGGWCCY	1 cut(s)	386
PstNI	CAGNNNCTG	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	163, 501
RsaI	GTAC	5 cut(s)	40, 619, 746, 1286, 1462
RsaNI	GTAC	5 cut(s)	39, 618, 745, 1285, 1461
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	5 cut(s)	447, 573, 597, 882, 1197
SatI	GCNGC	3 cut(s)	10, 333, 1161
Sau3AI	GATC	5 cut(s)	163, 501, 666, 1345, 1573
Sau96I	GGNCC	2 cut(s)	386, 834
ScaI	AGTACT	2 cut(s)	1286, 1462
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	3 cut(s)	79, 791, 1028
SduI	GDGCHC	2 cut(s)	79, 978
SfaNI	GCATC	7 cut(s)	46, 166, 814, 847, 1063, 1090, 1349
SfuI	TTCGAA	1 cut(s)	644
SinI	GGWCC	2 cut(s)	386, 834
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	6 cut(s)	289, 570, 648, 917, 990, 1490
SsiI	CCGC	2 cut(s)	485, 871
SspMI	CTAG	4 cut(s)	693, 707, 828, 852
StyD4I	CCNGG	3 cut(s)	77, 789, 1026
StyI	CCWWGG	2 cut(s)	381, 978
TaaI	ACNGT	3 cut(s)	136, 834, 1309
TaiI	ACGT	2 cut(s)	811, 1153
TaqI	TCGA	6 cut(s)	644, 750, 1060, 1289, 1348, 1576
TasI	AATT	6 cut(s)	289, 570, 648, 917, 990, 1490
TatI	WGTACW	4 cut(s)	38, 744, 1284, 1460
TfiI	GAWTC	9 cut(s)	149, 261, 401, 583, 635, 1090, 1114, 1394, 1559
Tru1I	TTAA	5 cut(s)	447, 573, 597, 882, 1197
Tru9I	TTAA	5 cut(s)	447, 573, 597, 882, 1197
TscAI	CASTG	4 cut(s)	329, 403, 676, 1312
TseFI	GTSAC	2 cut(s)	1481, 1497
TseI	GCWGC	3 cut(s)	9, 332, 1160
Tsp45I	GTSAC	2 cut(s)	1481, 1497
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	4 cut(s)	329, 403, 676, 1312
VpaK11BI	GGWCC	2 cut(s)	386, 834
XapI	RAATTY	3 cut(s)	289, 917, 990
XbaI	TCTAGA	1 cut(s)	692
XceI	RCATGY	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XspI	CTAG	4 cut(s)	693, 707, 828, 852
ZrmI	AGTACT	2 cut(s)	1286, 1462
Zsp2I	ATGCAT	1 cut(s)	1342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.