Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000674.1

Orthogroup ID

OG0013012

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 10233

Gene Structure 10233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000674.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6552 bp

atgggcgatggaggagtcgcatgcatgcctttgcagcataatatcatggacaggtttccaattccggagaagactgcgctttgcggaggcaatactaatactaatactaatgctactactactactactaccaccgctaacaatggcttcaattccaagccggttgttaagaagaaggtaatgaagatcaagaagaggattgtcaggaagcccaaggcaaaaagcaacagtaacgtagagtcggggaagagtgagctgggattggttaaaggtgagaagagtgatactactaaggaagcagagaacagtggtggtgccaaggaagcagccgagaagagtggtgtgaaggaagctgtaaaggaagctgagaacagtgctgctcagcaagttgagaacgtcgaaaataatggtgaggataagaaggaggaagtggaagagggtgaattggggactttgaatggtgaatttgttccggacaagtggcggagaagcgaggttgagaaggaggagattgggggtgagaaatggaggagaagcgaggtggagaagggagagtctttttctgggaaatggcgtagaggtgatgcagagaaggcagatatatatcccgagaagagtagaaatagtgaagctgaattcggctcgtggagaccacccaaggatgaaattgaaagaggtgagtatattccagatagatggcaaaaaggagagctggccagagatgactacagtaaccgaaaaatgcccgccaggtacgatatgggtgggaggggcaggggaaggggctggaaatttgagtccccttctggcaagtatccaaatgatgacgggtttagaaggaaagaatatagtagaggtgggggtcagcacagcaagagtactttcaggtgggatagtggccaggagaggaatacgaggatcagttccaaaattgttgatgatgagggtgtctacaagaatgagtacagcagtgagtacagcaatggtaagtatcaagcaaaggattactcttctgttaatcggttgaagaggtatggtcctgattcaaatagtagtgagcggaagcactatggagattatggggattatgcgggtttaaaaagtcgcaagctttctgatgaaagtaatcgctctgctcactctgagcattattcacaccgttctggggagagatcttatcgaaatccttcttttagaccagcatcagacaagtactcttccaggcactatgaacctactttgtcttccagagtggtttatgacaggcatgggcgaagtccaggtctctctgagcggtccccacgtgacaggtcccggtattatgatcacctggaccggagtccagtgcgccgtgagagatctccatatgatctagagaggtccccttatggccgtgagaaatcaccatatggccgtgagagatctccatatggtcatgagaaatctccatatgtacgtgataaatctccacatgttcgtgacagatctccatatgttcgcgacaagtctccatatgctcgcgagaagtcaccatatggacgtgaaagatctccatatgttcgtgacagatctccttatgttctggagagatctccatacgaacggagccgtaattatgatcacagaaaccgcagtttgtctccacaagatcgacctaggtaccatgatcgcagggatcacaccccaaactatttggagcggtcaccacgtggtgaccggggtagagcttctagttatagaggtacaggccgcaaaagtggagcaagtgataggcgcaactcccaatataaagcgcacgaagataagctggtgcagaaggatcccacgggaacggactcaaattcctctgccaaagaatgtcaggatagaagcagtgttcttgacattaatggaactgtggagacaaacaccaattctgagtctcacaaagaagaaccgtctcaaagtccaaatataaattgcaaagaaacttctcatattagtgcagcccctcctgaagagctgccttctatggaagaagatatggatatatgcgacacaccaccacatgtcccagtgattgctgattcatccacagggaaatggttttaccttgattattatggtgtggaatgtgggccttccaaattatgtgagcttaaagcacttgttgaagaaggagctctgatgtccgatcacatggtcaagcactcagacagtgataggtgggtaactgttgaaaatgcagtttcgccattgattaccgtaaattttccatccattgtatcggactcgataactggactagtaagccctccagaagctcctggcaatctattggcagatattggacatactgggcactatggtactcagagtgggagtttaccggggttgtgtgcagatgttgcttctgagcctctagaagatttgcacattgaagaaagggttggggctctgatggaaggtttaacagttattcctggcagggaacttgaagctgttggagaagttctgcaaatgtcatttgaatctgctcaactggaagtatggggaaacagtgaaggtctctctcaaggtcatatcggtgaacagaatgatcagaaaactgaggaaccacgattttctgacattaaaatgaaagaagcagcagaaatagggttgactttaccctctgacaaagatgcttttgcttgtggtgattccggtgactggttttctggtcgatggtcatgcaagggtggtgattggaaaaggaacgaagaaggtgtgcaagataggtcttctagaaagaaacttgttgtcaatgatggtttcccattatgccagatgtcaaaatctgggtatgaagaccctcgatggcaaagaaaagatgaactgtattatccttcacagaacagaaggcttgatctacctacttgggctttttcatgtccagatgatgctaatagagtgtctcaaagtaagccaactgttataaaaggagtaaaaggaactatccttccggtagtcaagataaatgcatgtgttgtaaaagaccacggttcatttgtttctgagccgcgaataaaagcacgaggaatggaaaggcatccttcaaggtctgctcggtcatattccgcaagtagtgatggcaagagatcatctggcgatggtgattctcaaatgaaaccagtaggtgaccgaggctcaaagggatcttccaaatgcgtttcctccattaaaatccccaaagaccgtattggcacagttgatgacttgcaattgcatttgggagactggtactaccttgatggtgctgggcatgaacgaggaccttcatcattctctgagctacaggccttagttgatcaaggagtgatcctgaaacatagcagtgtgttccggaaatttgataaagtctgggttccagttacctctgccattgagacttctgatgctaccaaaatgaataaggagaagaacagaacctcaagtaatttttcagggcaatctcaaagtgctacacttgcagaatcaaaaacaaatttgagttggttgcagaatctgcaccctcagttcattggttatacatgtggaaagcttcatgaattggtgatgaaatcttataaaagtcgggagtttgctgcagccataaatgaggttttagatccatggattaatgcaaggcagccaaaaaaagagttggacaagcacatgtactggaaagcagatggtgatgcacgttcttctaaaagaactcggttgctggttgatgaaagtgaagaagactatgacgcagaagaggacttgcaaacaatagaaaaggatgattccgcatttgaggatctaattggtaatgcttctttcttcagagaagacagcttgagttatggatcagagatggcaagctggggtttattggatggacatgtgctggcacgggtctttcattttttaagattggacatgaaatctcttaccattgcttctctgacttgtaagcactggagagctgcggtcagtttttacaaggatatttcaagacaggtagacttgtcatccttgggtcccaactgcaccgactccatgattgtgaagattatgagtggttatggcaaagagaagattaattctatggttctaattggttgcacaaacatcactccccacactcttgaagagattcttggttcacttccttgtctatctaccatagatattaggggttgcaaccagtttggtgagttggtcattaaatttcagaacctgaactggattaagagccgaagctcacgtggtacaaagatacatgatgaatccaattcaaaattaaggagtctgaaatatatcagtgagaaatcttcttatgtttcgagaagtaaggttctgggtaatgatatggatgattttagtgaactcaaagtgtactttgatagtgtggataagagagactcagctaatcaatcattccggggaagtttatacaaacgttcaaaactatttgatgctagacggtcctcatccattctatctagggatgctcgtatgaggcggttgtccattaagaaatcagaaaatggttataagaggatggaggaatttgttgcttcaagtctgaaggacatcatgaaggagaatacatctgatttctttgtacccaaggttgctgaaattcaagatagaatgagaaatgggtattacattcgccgaggattgagttctgtgaaggaggatatcagtcgaatgtgcagggatgcaattaaagcaaagaatcgtggtgaagctggagatattaatcacctgaatcacattattaatttgtttatacaacttgccacacgtttggaaggggcttccaagtcttctgatgcaagggatgagctgatcaagtcgtgggaagatgatacatttgcaggggtttcttctgcctccaagagtaaaaagaagctcaataagacgtctgaaaggaagttgaggagtaatggttcctttatgaatggtagtgtggataatggagaatatgcatctgatcgagaaatcagaaggcgtttatccaagttgaataaaaaatctatggattcagaaagtgaaacatctgatgatcttgataggtcatctgaagatagcaagagcaatactgagagtactgcctcggatacagaaagtgacttggaatctgggtcacagagtcaacctgggcaatcaacagcagatggatgcttagctcatgatgagggttcagattctgtgactgatgatcgtgagtggggagctcgcatgaccaaatcaagcttggttcctcctgttacgagaaaatatgaagtcattcatgaatatgttattgtatcgcatgaagaggatgtaaagcggaagatgcaggtatctttgccggatgactatgttgagaagctttattcgcagaagaatggaactgaggagtctgatatggaacttcctgaagtcaaggactacaagcccaggaaaatgcttggagatgaggttctagagcaagaggtttatggaattgatccctacagccataatcttttacttgattccatgccagaggagttggattggcctcttttagagaagcatctgtttatagaagatgtgcttcttcgcaccctgaataaggaagttagacactttactggtaccggaactactcccatgatctatcctttgcggcccgttgttgaagatattcggaaaactgctgaagaggatagtgatattcgaactgtgagaatgtgccagggtattttgaaggccatagacagtcgccctgatgataaatatgttgcttatagaaaggggctcggcgttgtttgcaacaaagaagaaggttttggagaagaagattttgttgtggaatttttgggggaggtatatcctgtttggaaatggtatgagaagcaagatgggattcgttctctgcagaaaaacagtaaagatccagctccggaattttacaacatttatcttgaaaggcccaagggtgatgctgatgggtatgatttagttgttgttgatgccatgcataaagcaaactatgcaagtagaatttgtcactcgtgccgacctaattgtgaagcaaaagttactgctgtcgatggtcgttaccagatcggtatctacactgtacgtaaaattcaatatggtgaagagatcacatttgactacaactctgttacggagagtaaggaagaatatgaagcatcagtttgtttgtgtggcagtcaagtttgccggggaagttacctgaatttgacaggcgaaggagcattcctgaaggtgctgaaggattggcatggaattctggatcgtcatcatctaatgctggaagcttgcgagttaaattcagtatctgaggaggattatcttgacctgggaagagctggtttaggcaattgtttgcttggtgggttgccagattgggtgattgcatattcagctcgtttggtgaggttcataaacttcgaaagaacaaagcttcctgaggtgattttaaagcacaacttagaagaaaagaggaagtatttctcagatatatgtcttgaggttgagaagagtgacgcggaggttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

2184

Amino Acids

246.96

Weight (kDa)

6.29

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15180
fragaria_vesca	FvH4_6g43760
malus_domestica	MD09G1103200.v1.1 MD17G1091000.v1.1
prunus_persica	Prupe.3G222600_v2.0.a1
pyrus_communis	pycom09g02660 pycom17g08780
rosa_chinensis	RchiOBHm_Chr2g0160501
rosa_laevigata	RLG00000021218
rosa_multiflora	Rmu_sc0000674.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089780
rosa_rugosa	Rorug02G0483400 Rorug02G0483400
rosa_samantha	Rh2AG548700 Rh2BG562400 Rh2CG533000 Rh2DG571100
rosa_wichuraiana	Rw2G045430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	2957, 3588, 4545
AatII	GACGTC	1 cut(s)	4922
Acc36I	ACCTGC	1 cut(s)	5329
Acc65I	GGTACC	2 cut(s)	1659, 5618
AccB1I	GGYRCC	3 cut(s)	314, 1659, 5618
AccBSI	CCGCTC	3 cut(s)	1060, 1294, 1699
AccI	GTMKAC	2 cut(s)	951, 4011
AccII	CGCG	4 cut(s)	1500, 1521, 3043, 6542
AccIII	TCCGGA	4 cut(s)	64, 472, 3363, 5926
AclI	AACGTT	1 cut(s)	4450
AcoI	YGGCCR	4 cut(s)	714, 898, 1390, 1411
AcuI	CTGAAG	8 cut(s)	2016, 3814, 4598, 5100, 5439, 5703, 6275, 6284
AcvI	CACGTG	3 cut(s)	1304, 1709, 4256
AcyI	GRCGYC	1 cut(s)	4919
AdeI	CACNNNGTG	2 cut(s)	1709, 1712
AfiI	CCNNNNNNNGG	3 cut(s)	1165, 2691, 5596
AflIII	ACRYGT	6 cut(s)	1471, 2047, 3551, 3675, 3889, 4799
AhlI	ACTAGT	1 cut(s)	2284
AjiI	CACGTC	1 cut(s)	1541
AjuI	GAANNNNNNNTTGG	6 cut(s)	2412, 2444, 4131, 4163, 5796, 5828
AloI	GAACNNNNNNTCC	8 cut(s)	2965, 2997, 4930, 4962, 5445, 5477, 6442, 6474
Alw21I	GWGCWC	2 cut(s)	2164, 5236
AlwNI	CAGNNNCTG	4 cut(s)	3526, 4228, 5207, 6332
Ama87I	CYCGRG	1 cut(s)	608
Aor13HI	TCCGGA	4 cut(s)	64, 472, 3363, 5926
ArsI	GACNNNNNNTTYG	2 cut(s)	1267, 1299
AseI	ATTAAT	5 cut(s)	1887, 3639, 4089, 4755, 4776
Asp700I	GAANNNNTTC	6 cut(s)	468, 1186, 4143, 5286, 5667, 6503
Asp718I	GGTACC	2 cut(s)	1659, 5618
AspA2I	CCTAGG	1 cut(s)	1655
AspLEI	GCGC	4 cut(s)	79, 1350, 1776, 1795
AsuC2I	CCSGG	5 cut(s)	1315, 1718, 2370, 4433, 6215
AsuII	TTCGAA	2 cut(s)	5701, 6444
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	8 cut(s)	1037, 1296, 1311, 1333, 1380, 3293, 4028, 4476
AvrII	CCTAGG	1 cut(s)	1655
AxyI	CCTNAGG	1 cut(s)	6462
BaeGI	GKGCMC	1 cut(s)	2343
BaeI	ACNNNNGTAYC	2 cut(s)	1643, 1676
BalI	TGGCCA	2 cut(s)	716, 900
BamHI	GGATCC	1 cut(s)	1819
BanI	GGYRCC	3 cut(s)	314, 1659, 5618
BanII	GRGCYC	4 cut(s)	2164, 2437, 5236, 5784
BauI	CACGAG	3 cut(s)	643, 3054, 6037
BbrPI	CACGTG	3 cut(s)	1304, 1709, 4256
BbsI	GAAGAC	7 cut(s)	77, 1236, 2754, 2835, 3753, 3843, 4815
Bbv12I	GWGCWC	2 cut(s)	2164, 5236
BceAI	ACGGC	4 cut(s)	1335, 1377, 1398, 1593
BcgI	CGANNNNNNTGC	2 cut(s)	2694, 2728
BciVI	GTATCC	2 cut(s)	825, 5110
BclI	TGATCA	5 cut(s)	1324, 1618, 2578, 3328, 4845
BcnI	CCSGG	5 cut(s)	1315, 1718, 2370, 4433, 6215
BcuI	ACTAGT	1 cut(s)	2284
BfaI	CTAG	9 cut(s)	1373, 1656, 1731, 2285, 2402, 2766, 4470, 4494, 5465
BfmI	CTRYAG	5 cut(s)	727, 3314, 3606, 5494, 5900
BfuAI	ACCTGC	1 cut(s)	5329
BfuI	GTATCC	2 cut(s)	825, 5110
BglII	AGATCT	7 cut(s)	1172, 1358, 1421, 1484, 1547, 1568, 1589
BlnI	CCTAGG	1 cut(s)	1655
BlpI	GCTNAGC	2 cut(s)	381, 5182
BmcAI	AGTACT	3 cut(s)	880, 1214, 5107
Bme18I	GGWCC	8 cut(s)	1037, 1296, 1311, 1333, 1380, 3293, 4028, 4476
BmeT110I	CYCGRG	1 cut(s)	608
BmgBI	CACGTC	1 cut(s)	1541
BmrI	ACTGGG	2 cut(s)	2048, 2346
BmuI	ACTGGG	2 cut(s)	2048, 2346
BoxI	GACNNNNGTC	1 cut(s)	1338
BpiI	GAAGAC	7 cut(s)	77, 1236, 2754, 2835, 3753, 3843, 4815
BpmI	CTGGAG	4 cut(s)	1604, 2280, 3988, 4767
Bpu1102I	GCTNAGC	2 cut(s)	381, 5182
Bpu14I	TTCGAA	2 cut(s)	5701, 6444
BpuEI	CTTGAG	4 cut(s)	2538, 3436, 3865, 6542
BpuMI	CCSGG	5 cut(s)	1315, 1718, 2370, 4433, 6215
BsaAI	YACGTR	5 cut(s)	1304, 1457, 1709, 4256, 6110
BsaBI	GATNNNNATC	4 cut(s)	603, 4755, 6095, 6291
BsaHI	GRCGYC	1 cut(s)	4919
BsaI	GGTCTC	3 cut(s)	643, 1289, 2552
BsaWI	WCCGGW	8 cut(s)	64, 472, 1335, 2684, 2983, 3363, 5621, 5926
BsaXI	ACNNNNNCTCC	4 cut(s)	4930, 4960, 5445, 5475
Bsc4I	CCNNNNNNNGG	3 cut(s)	1165, 2691, 5596
Bse118I	RCCGGY	1 cut(s)	160
Bse21I	CCTNAGG	1 cut(s)	6462
Bse3DI	GCAATG	2 cut(s)	988, 3942
Bse8I	GATNNNNATC	4 cut(s)	603, 4755, 6095, 6291
BseAI	TCCGGA	4 cut(s)	64, 472, 3363, 5926
BseJI	GATNNNNATC	4 cut(s)	603, 4755, 6095, 6291
BseLI	CCNNNNNNNGG	3 cut(s)	1165, 2691, 5596
BseMI	GCAATG	2 cut(s)	988, 3942
BseRI	GAGGAG	7 cut(s)	27, 521, 544, 4951, 5411, 5543, 6350
BseSI	GKGCMC	1 cut(s)	2343
BseYI	CCCAGC	3 cut(s)	256, 3278, 3870
BsgI	GTGCAG	6 cut(s)	1832, 2004, 2400, 3512, 4021, 4729
Bsh1236I	CGCG	4 cut(s)	1500, 1521, 3043, 6542
BshNI	GGYRCC	3 cut(s)	314, 1659, 5618
BsiHKAI	GWGCWC	2 cut(s)	2164, 5236
BsiHKCI	CYCGRG	1 cut(s)	608
BslFI	GGGAC	7 cut(s)	463, 784, 1282, 1297, 1366, 2036, 4014
BslI	CCNNNNNNNGG	3 cut(s)	1165, 2691, 5596
BsmBI	CGTCTC	1 cut(s)	1944
BsmFI	GGGAC	7 cut(s)	463, 784, 1282, 1297, 1366, 2036, 4014
BsmI	GAATGC	1 cut(s)	6248
Bso31I	GGTCTC	3 cut(s)	643, 1289, 2552
BsoBI	CYCGRG	1 cut(s)	608
Bsp119I	TTCGAA	2 cut(s)	5701, 6444
Bsp1286I	GDGCHC	5 cut(s)	2164, 2343, 2437, 5236, 5784
Bsp13I	TCCGGA	4 cut(s)	64, 472, 3363, 5926
Bsp1720I	GCTNAGC	2 cut(s)	381, 5182
Bsp19I	CCATGG	1 cut(s)	3632
Bsp68I	TCGCGA	2 cut(s)	1500, 1521
BspEI	TCCGGA	4 cut(s)	64, 472, 3363, 5926
BspFNI	CGCG	4 cut(s)	1500, 1521, 3043, 6542
BspHI	TCATGA	5 cut(s)	1435, 3565, 4587, 5188, 5290
BspMAI	CTGCAG	2 cut(s)	3610, 5904
BspMI	ACCTGC	1 cut(s)	5329
BspQI	GCTCTTC	2 cut(s)	1992, 6352
BspT104I	TTCGAA	2 cut(s)	5701, 6444
BspT107I	GGYRCC	3 cut(s)	314, 1659, 5618
BspTNI	GGTCTC	3 cut(s)	643, 1289, 2552
BsrBI	CCGCTC	3 cut(s)	1060, 1294, 1699
BsrDI	GCAATG	2 cut(s)	988, 3942
BsrFI	RCCGGY	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	160
BssNI	GRCGYC	1 cut(s)	4919
BssSI	CACGAG	3 cut(s)	643, 3054, 6037
BssT1I	CCWWGG	8 cut(s)	213, 318, 657, 1655, 3632, 4023, 4620, 5958
Bst2BI	CACGAG	3 cut(s)	643, 3054, 6037
BstACI	GRCGYC	1 cut(s)	4919
BstAPI	GCANNNNNTGC	3 cut(s)	2387, 3526, 6017
BstBAI	YACGTR	5 cut(s)	1304, 1457, 1709, 4256, 6110
BstBI	TTCGAA	2 cut(s)	5701, 6444
BstDSI	CCRYGG	3 cut(s)	1824, 3019, 3632
BstEII	GGTNACC	3 cut(s)	1701, 1712, 3158
BstENI	CCTNNNNNAGG	1 cut(s)	5594
BstFNI	CGCG	4 cut(s)	1500, 1521, 3043, 6542
BstHHI	GCGC	4 cut(s)	79, 1350, 1776, 1795
BstNSI	RCATGY	8 cut(s)	24, 28, 1475, 2051, 3006, 3555, 3679, 3893
BstPAI	GACNNNNGTC	1 cut(s)	1338
BstPI	GGTNACC	3 cut(s)	1701, 1712, 3158
BstSFI	CTRYAG	5 cut(s)	727, 3314, 3606, 5494, 5900
BstSLI	GKGCMC	1 cut(s)	2343
BstSNI	TACGTA	1 cut(s)	6110
BstUI	CGCG	4 cut(s)	1500, 1521, 3043, 6542
BstV2I	GAAGAC	7 cut(s)	77, 1236, 2754, 2835, 3753, 3843, 4815
BstXI	CCANNNNNNTGG	2 cut(s)	696, 4804
Bsu36I	CCTNAGG	1 cut(s)	6462
BsuI	GTATCC	2 cut(s)	825, 5110
BtgI	CCRYGG	3 cut(s)	1824, 3019, 3632
BtgZI	GCGATG	2 cut(s)	21, 3144
BtrI	CACGTC	1 cut(s)	1541
BtsI	GCAGTG	3 cut(s)	976, 1879, 3361
BtuMI	TCGCGA	2 cut(s)	1500, 1521
BveI	ACCTGC	1 cut(s)	5329
CaiI	CAGNNNCTG	4 cut(s)	3526, 4228, 5207, 6332
CciI	TCATGA	5 cut(s)	1435, 3565, 4587, 5188, 5290
CfoI	GCGC	4 cut(s)	79, 1350, 1776, 1795
Cfr10I	RCCGGY	1 cut(s)	160
CseI	GACGC	1 cut(s)	3764
DraI	TTTAAA	2 cut(s)	1098, 6474
DraIII	CACNNNGTG	2 cut(s)	1709, 1712
EaeI	YGGCCR	4 cut(s)	714, 898, 1390, 1411
EciI	GGCGGA	1 cut(s)	499
Ecl136II	GAGCTC	2 cut(s)	2162, 5234
Eco105I	TACGTA	1 cut(s)	6110
Eco130I	CCWWGG	8 cut(s)	213, 318, 657, 1655, 3632, 4023, 4620, 5958
Eco147I	AGGCCT	1 cut(s)	3320
Eco24I	GRGCYC	4 cut(s)	2164, 2437, 5236, 5784
Eco31I	GGTCTC	3 cut(s)	643, 1289, 2552
Eco32I	GATATC	1 cut(s)	4696
Eco47I	GGWCC	8 cut(s)	1037, 1296, 1311, 1333, 1380, 3293, 4028, 4476
Eco53kI	GAGCTC	2 cut(s)	2162, 5234
Eco57I	CTGAAG	8 cut(s)	2016, 3814, 4598, 5100, 5439, 5703, 6275, 6284
Eco72I	CACGTG	3 cut(s)	1304, 1709, 4256
Eco81I	CCTNAGG	1 cut(s)	6462
Eco88I	CYCGRG	1 cut(s)	608
Eco91I	GGTNACC	3 cut(s)	1701, 1712, 3158
EcoICRI	GAGCTC	2 cut(s)	2162, 5234
EcoNI	CCTNNNNNAGG	1 cut(s)	5594
EcoO109I	RGGNCCY	4 cut(s)	1311, 1380, 3293, 4028
EcoO65I	GGTNACC	3 cut(s)	1701, 1712, 3158
EcoRI	GAATTC	2 cut(s)	635, 6279
EcoRV	GATATC	1 cut(s)	4696
EcoT14I	CCWWGG	8 cut(s)	213, 318, 657, 1655, 3632, 4023, 4620, 5958
EcoT22I	ATGCAT	4 cut(s)	26, 3004, 4987, 6006
EcoT38I	GRGCYC	4 cut(s)	2164, 2437, 5236, 5784
ErhI	CCWWGG	8 cut(s)	213, 318, 657, 1655, 3632, 4023, 4620, 5958
Esp3I	CGTCTC	1 cut(s)	1944
FalI	AAGNNNNNCTT	8 cut(s)	3058, 3090, 4131, 4163, 5562, 5594, 6467, 6499
FaqI	GGGAC	7 cut(s)	463, 784, 1282, 1297, 1366, 2036, 4014
FauI	CCCGC	2 cut(s)	754, 1084
FauNDI	CATATG	8 cut(s)	1366, 1408, 1429, 1450, 1492, 1513, 1534, 1555
FbaI	TGATCA	5 cut(s)	1324, 1618, 2578, 3328, 4845
FblI	GTMKAC	2 cut(s)	951, 4011
FriOI	GRGCYC	4 cut(s)	2164, 2437, 5236, 5784
FspBI	CTAG	9 cut(s)	1373, 1656, 1731, 2285, 2402, 2766, 4470, 4494, 5465
GlaI	GCGC	4 cut(s)	78, 1349, 1775, 1794
GsaI	CCCAGC	3 cut(s)	260, 3282, 3874
GsuI	CTGGAG	4 cut(s)	1604, 2280, 3988, 4767
HgaI	GACGC	1 cut(s)	3764
HhaI	GCGC	4 cut(s)	79, 1350, 1776, 1795
Hin1I	GRCGYC	1 cut(s)	4919
Hin6I	GCGC	4 cut(s)	77, 1348, 1774, 1793
HinP1I	GCGC	4 cut(s)	77, 1348, 1774, 1793
HincII	GTYRAC	2 cut(s)	2643, 5153
HindII	GTYRAC	2 cut(s)	2643, 5153
HindIII	AAGCTT	6 cut(s)	1109, 3560, 5251, 5369, 6309, 6455
Hpy166II	GTNNAC	9 cut(s)	952, 2366, 2570, 2643, 4012, 4154, 4376, 4387, 5153
Hpy8I	GTNNAC	9 cut(s)	952, 2366, 2570, 2643, 4012, 4154, 4376, 4387, 5153
Hpy99I	CGWCG	1 cut(s)	401
Hsp92I	GRCGYC	1 cut(s)	4919
HspAI	GCGC	4 cut(s)	77, 1348, 1774, 1793
KflI	GGGWCCC	1 cut(s)	4028
Kpn2I	TCCGGA	4 cut(s)	64, 472, 3363, 5926
KpnI	GGTACC	2 cut(s)	1663, 5622
Ksp22I	TGATCA	5 cut(s)	1324, 1618, 2578, 3328, 4845
LguI	GCTCTTC	2 cut(s)	1992, 6352
LmnI	GCTCC	8 cut(s)	1605, 1696, 1760, 2159, 2308, 5231, 5929, 6245
MaeI	CTAG	9 cut(s)	1373, 1656, 1731, 2285, 2402, 2766, 4470, 4494, 5465
MbiI	CCGCTC	3 cut(s)	1060, 1294, 1699
MfeI	CAATTG	2 cut(s)	3242, 6373
MhlI	GDGCHC	5 cut(s)	2164, 2343, 2437, 5236, 5784
MlsI	TGGCCA	2 cut(s)	716, 900
MluNI	TGGCCA	2 cut(s)	716, 900
MmeI	TCCRAC	3 cut(s)	2464, 3645, 5514
Mox20I	TGGCCA	2 cut(s)	716, 900
Mph1103I	ATGCAT	4 cut(s)	26, 3004, 4987, 6006
MroI	TCCGGA	4 cut(s)	64, 472, 3363, 5926
MroXI	GAANNNNTTC	6 cut(s)	468, 1186, 4143, 5286, 5667, 6503
MscI	TGGCCA	2 cut(s)	716, 900
MslI	CAYNNNNRTG	7 cut(s)	1476, 1980, 2565, 2615, 3354, 4052, 5295
Msp20I	TGGCCA	2 cut(s)	716, 900
MunI	CAATTG	2 cut(s)	3242, 6373
Mva1269I	GAATGC	1 cut(s)	6248
MvnI	CGCG	4 cut(s)	1500, 1521, 3043, 6542
NciI	CCSGG	5 cut(s)	1315, 1718, 2370, 4433, 6215
NcoI	CCATGG	1 cut(s)	3632
NdeI	CATATG	8 cut(s)	1366, 1408, 1429, 1450, 1492, 1513, 1534, 1555
NmeAIII	GCCGAG	3 cut(s)	355, 4694, 5763
NruI	TCGCGA	2 cut(s)	1500, 1521
NsiI	ATGCAT	4 cut(s)	26, 3004, 4987, 6006
NspI	RCATGY	8 cut(s)	24, 28, 1475, 2051, 3006, 3555, 3679, 3893
NspV	TTCGAA	2 cut(s)	5701, 6444
PaeI	GCATGC	2 cut(s)	24, 28
PagI	TCATGA	5 cut(s)	1435, 3565, 4587, 5188, 5290
PceI	AGGCCT	1 cut(s)	3320
PciI	ACATGT	5 cut(s)	1471, 2047, 3551, 3675, 3889
PciSI	GCTCTTC	2 cut(s)	1992, 6352
PctI	GAATGC	1 cut(s)	6248
PdmI	GAANNNNTTC	6 cut(s)	468, 1186, 4143, 5286, 5667, 6503
PmaCI	CACGTG	3 cut(s)	1304, 1709, 4256
PmlI	CACGTG	3 cut(s)	1304, 1709, 4256
Ppu21I	YACGTR	5 cut(s)	1304, 1457, 1709, 4256, 6110
PpuMI	RGGWCCY	4 cut(s)	1311, 1380, 3293, 4028
PscI	ACATGT	5 cut(s)	1471, 2047, 3551, 3675, 3889
PshAI	GACNNNNGTC	1 cut(s)	1338
PshBI	ATTAAT	5 cut(s)	1887, 3639, 4089, 4755, 4776
PsiI	TTATAA	3 cut(s)	2957, 3588, 4545
Psp124BI	GAGCTC	2 cut(s)	2164, 5236
Psp1406I	AACGTT	1 cut(s)	4450
Psp5II	RGGWCCY	4 cut(s)	1311, 1380, 3293, 4028
PspCI	CACGTG	3 cut(s)	1304, 1709, 4256
PspEI	GGTNACC	3 cut(s)	1701, 1712, 3158
PspFI	CCCAGC	3 cut(s)	256, 3278, 3870
PspPPI	RGGWCCY	4 cut(s)	1311, 1380, 3293, 4028
PstI	CTGCAG	2 cut(s)	3610, 5904
PstNI	CAGNNNCTG	4 cut(s)	3526, 4228, 5207, 6332
RruI	TCGCGA	2 cut(s)	1500, 1521
RseI	CAYNNNNRTG	7 cut(s)	1476, 1980, 2565, 2615, 3354, 4052, 5295
SacI	GAGCTC	2 cut(s)	2164, 5236
SapI	GCTCTTC	2 cut(s)	1992, 6352
ScaI	AGTACT	3 cut(s)	880, 1214, 5107
SduI	GDGCHC	5 cut(s)	2164, 2343, 2437, 5236, 5784
SfcI	CTRYAG	5 cut(s)	727, 3314, 3606, 5494, 5900
SfuI	TTCGAA	2 cut(s)	5701, 6444
SinI	GGWCC	8 cut(s)	1037, 1296, 1311, 1333, 1380, 3293, 4028, 4476
SmiMI	CAYNNNNRTG	7 cut(s)	1476, 1980, 2565, 2615, 3354, 4052, 5295
SmlI	CTYRAG	4 cut(s)	2553, 3451, 3844, 6521
SmoI	CTYRAG	4 cut(s)	2553, 3451, 3844, 6521
SnaBI	TACGTA	1 cut(s)	6110
SpeI	ACTAGT	1 cut(s)	2284
SphI	GCATGC	2 cut(s)	24, 28
SseBI	AGGCCT	1 cut(s)	3320
SspMI	CTAG	9 cut(s)	1373, 1656, 1731, 2285, 2402, 2766, 4470, 4494, 5465
SstI	GAGCTC	2 cut(s)	2164, 5236
StuI	AGGCCT	1 cut(s)	3320
StyI	CCWWGG	8 cut(s)	213, 318, 657, 1655, 3632, 4023, 4620, 5958
TaqII	GACCGA	2 cut(s)	3078, 3177
TatI	WGTACW	7 cut(s)	878, 963, 975, 1212, 3678, 4386, 5105
TauI	GCSGC	3 cut(s)	1752, 3043, 5653
TspGWI	ACGGA	3 cut(s)	1618, 1847, 6173
VpaK11BI	GGWCC	8 cut(s)	1037, 1296, 1311, 1333, 1380, 3293, 4028, 4476
VspI	ATTAAT	5 cut(s)	1887, 3639, 4089, 4755, 4776
XagI	CCTNNNNNAGG	1 cut(s)	5594
XbaI	TCTAGA	4 cut(s)	1372, 2401, 2765, 5464
XceI	RCATGY	8 cut(s)	24, 28, 1475, 2051, 3006, 3555, 3679, 3893
XcmI	CCANNNNNNNNNTGG	2 cut(s)	757, 5251
XmaJI	CCTAGG	1 cut(s)	1655
XmiI	GTMKAC	2 cut(s)	951, 4011
XmnI	GAANNNNTTC	6 cut(s)	468, 1186, 4143, 5286, 5667, 6503
XspI	CTAG	9 cut(s)	1373, 1656, 1731, 2285, 2402, 2766, 4470, 4494, 5465
ZraI	GACGTC	1 cut(s)	4920
ZrmI	AGTACT	3 cut(s)	880, 1214, 5107
Zsp2I	ATGCAT	4 cut(s)	26, 3004, 4987, 6006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.