Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005417

Physical Location & Seq

Genomic Coordinates Forward (+)

61319908 .. 61323751

Gene Structure 3844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0483400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCCTGAGAAAATAACTGCTGAGGATCTTTTGAACAACATTGTGGGCACAATAGCTGAAAGTAGTTCAAAACAGAAATCTGTGTCTTTTTTTGGCGACGACAAATCAGACTCTGTCGGTTCTCAGTTGAATCGGCTATTTGGACGCCAAAAATCTGTTCACCACCTTCTGGGTGGAGGAAAATCTGCTGACGTGTTGTTGTGGAGGAACAAAAAGATATCAGCTAGTGTTTTAACTGGTGCAACTTTTGTTTGGGTGCTCTTTGAATGGCTGAATTATCATTTCTTGACTCTTGTGGGTTTTGCTTTGGTTCTTGGTATGCTTGCTCAATTTCTCTGGTCAAATTTTTCGGGATTCGTTAACAGGTCCTCATCTAAAGTACCTCGCCTTGTTCTACCAGAGGACTTATTCGTCAACATTGCCATCTCAATTGGTGCTGAAATTAATAGAGGGCTGGAGTTTATTCAGGATGTTGCTTGTGGAGGAAATCTGAAGCAATTTCTTGTGGTTGTAGTAAGCTTGTGGGCTGCTTCAGTGATAGGAAGCTGGTGCAACTTTCTGACAGTTCTGTACATTGGTTTCATTGCTGCTCATACATTGCCAGTTTTGTATGAGAAATATGACGATCAGATCGACAGCTTTGTGTACTCAGTCTTTGGACAGCTTCAAAATCATTATCGCAAGCTGGATACTAGTGTCCTCAGCAGGATCCCTAAAGGAAATTTGAAGGCAAAGAAACATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0042054 GO:0042800 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051276 GO:0051568 GO:0061458 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

248

Amino Acids

27.56

Weight (kDa)

9.0

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	63 - 217	3e-55	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22100
fragaria_vesca	FvH4_1g29760 FvH4_6g43750
malus_domestica	MD17G1091100.v1.1
prunus_persica	Prupe.3G222500_v2.0.a1
pyrus_communis	pycom17g08800
rosa_chinensis	RchiOBHm_Chr2g0160481
rosa_laevigata	RLG00000000602 RLG00000006966 RLG00000012534 RLG00000020740 RLG00000021217 RLG00000035791
rosa_multiflora	Rmu_sc0002771.1_g000001 Rmu_ssc0000110.1_g000012
rosa_roxburghii	Rroxscaffold_2G00089790
rosa_rugosa	Rorug02G0234500 Rorug02G0483400 Rorug04G0068000
rosa_samantha	Rh2AG291900 Rh2AG548600 Rh2BG222400 Rh2BG562200 Rh2CG532900 Rh2DG571000 Rh7CG232200 Rh7CG308300 Rh7DG351600
rosa_wichuraiana	Rw2G045420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	169
AclWI	GGATC	3 cut(s)	33, 703, 716
AcsI	RAATTY	2 cut(s)	343, 721
AcuI	CTGAAG	2 cut(s)	512, 516
AcyI	GRCGYC	1 cut(s)	145
AfaI	GTAC	3 cut(s)	381, 572, 647
AfiI	CCNNNNNNNGG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	6 cut(s)	34, 69, 130, 266, 668, 727
AhlI	ACTAGT	1 cut(s)	692
AjiI	CACGTC	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	7 cut(s)	56, 224, 519, 546, 639, 664, 685
AluI	AGCT	7 cut(s)	56, 224, 519, 546, 639, 664, 685
Alw21I	GWGCWC	1 cut(s)	261
AlwI	GGATC	3 cut(s)	33, 703, 716
AlwNI	CAGNNNCTG	1 cut(s)	113
ApeKI	GCWGC	2 cut(s)	527, 587
ApoI	RAATTY	2 cut(s)	343, 721
AseI	ATTAAT	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	366
BaeGI	GKGCMC	1 cut(s)	50
BaeI	ACNNNNGTAYC	2 cut(s)	681, 714
BamHI	GGATCC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	261
BbvCI	CCTCAGC	2 cut(s)	21, 701
BbvI	GCAGC	2 cut(s)	514, 574
BccI	CCATC	1 cut(s)	431
BciVI	GTATCC	1 cut(s)	682
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	2 cut(s)	225, 693
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	2 cut(s)	528, 588
BlsI	GCNGC	2 cut(s)	529, 589
Bme18I	GGWCC	1 cut(s)	366
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	366
BmiI	GGNNCC	1 cut(s)	710
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	2 cut(s)	21, 701
BsaHI	GRCGYC	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	241, 602
Bse3DI	GCAATG	3 cut(s)	417, 582, 596
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	3 cut(s)	417, 582, 596
BseMII	CTCAG	4 cut(s)	12, 137, 663, 715
BseNI	ACTGG	2 cut(s)	241, 602
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	514, 574
BsiHKAI	GWGCWC	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	169
Bsp1286I	GDGCHC	2 cut(s)	50, 261
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	4 cut(s)	25, 625, 630, 708
BspCNI	CTCAG	4 cut(s)	13, 136, 662, 714
BspLI	GGNNCC	1 cut(s)	710
BspPI	GGATC	3 cut(s)	33, 703, 716
BsrDI	GCAATG	3 cut(s)	417, 582, 596
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	2 cut(s)	241, 602
BssMI	GATC	4 cut(s)	25, 625, 630, 708
BssNI	GRCGYC	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	565
BstACI	GRCGYC	1 cut(s)	145
BstAUI	TGTACA	1 cut(s)	570
BstC8I	GCNNGC	2 cut(s)	324, 683
BstDEI	CTNAG	5 cut(s)	6, 21, 123, 649, 701
BstF5I	GGATG	1 cut(s)	475
BstKTI	GATC	4 cut(s)	28, 628, 633, 711
BstMBI	GATC	4 cut(s)	25, 625, 630, 708
BstSLI	GKGCMC	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	514, 574
BstX2I	RGATCY	2 cut(s)	25, 708
BstYI	RGATCY	2 cut(s)	25, 708
BsuI	GTATCC	1 cut(s)	682
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	324, 683
CaiI	CAGNNNCTG	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	366
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	3 cut(s)	380, 571, 646
CviAII	CATG	1 cut(s)	740
CviQI	GTAC	3 cut(s)	380, 571, 646
DdeI	CTNAG	5 cut(s)	6, 21, 123, 649, 701
DpnI	GATC	4 cut(s)	27, 627, 632, 710
DpnII	GATC	4 cut(s)	25, 625, 630, 708
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eco32I	GATATC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	366
Eco57I	CTGAAG	2 cut(s)	512, 516
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRV	GATATC	1 cut(s)	219
FaeI	CATG	1 cut(s)	743
FaiI	YATR	5 cut(s)	320, 594, 612, 621, 741
FatI	CATG	1 cut(s)	739
Fnu4HI	GCNGC	2 cut(s)	528, 588
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	2 cut(s)	528, 588
FspBI	CTAG	2 cut(s)	225, 693
GluI	GCNGC	2 cut(s)	528, 588
GsuI	CTGGAG	1 cut(s)	476
HgaI	GACGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	743
HincII	GTYRAC	2 cut(s)	361, 415
HindII	GTYRAC	2 cut(s)	361, 415
HindIII	AAGCTT	1 cut(s)	517
HinfI	GANTC	4 cut(s)	110, 130, 289, 354
HpaI	GTTAAC	1 cut(s)	361
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	4 cut(s)	160, 361, 415, 646
Hpy188I	TCNGA	4 cut(s)	109, 492, 561, 630
Hpy188III	TCNNGA	3 cut(s)	286, 351, 467
Hpy8I	GTNNAC	4 cut(s)	160, 361, 415, 646
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	176, 721
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	242, 552
HpyF3I	CTNAG	5 cut(s)	6, 21, 123, 649, 701
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	743
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	25, 625, 630, 708
Lsp1109I	GCAGC	2 cut(s)	514, 574
MaeI	CTAG	2 cut(s)	225, 693
MaeII	ACGT	1 cut(s)	192
MalI	GATC	4 cut(s)	27, 627, 632, 710
MboI	GATC	4 cut(s)	25, 625, 630, 708
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	2 cut(s)	25, 708
MhlI	GDGCHC	2 cut(s)	50, 261
MluCI	AATT	7 cut(s)	274, 329, 343, 429, 441, 497, 721
MlyI	GAGTC	2 cut(s)	104, 283
MnlI	CCTC	9 cut(s)	16, 170, 198, 379, 393, 394, 443, 476, 710
MseI	TTAA	3 cut(s)	233, 360, 444
MunI	CAATTG	1 cut(s)	429
NdeII	GATC	4 cut(s)	25, 625, 630, 708
NlaIII	CATG	1 cut(s)	743
NlaIV	GGNNCC	1 cut(s)	710
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	130, 354
PflFI	GACNNNGTC	1 cut(s)	113
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	529, 589
PleI	GAGTC	2 cut(s)	104, 283
PpsI	GAGTC	2 cut(s)	104, 283
PpuMI	RGGWCCY	1 cut(s)	366
PshBI	ATTAAT	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	710
PspPI	GGNCC	1 cut(s)	366
PspPPI	RGGWCCY	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	25, 708
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	3 cut(s)	381, 572, 647
RsaNI	GTAC	3 cut(s)	380, 571, 646
SaqAI	TTAA	3 cut(s)	233, 360, 444
SatI	GCNGC	2 cut(s)	528, 588
Sau3AI	GATC	4 cut(s)	25, 625, 630, 708
Sau96I	GGNCC	1 cut(s)	366
SchI	GAGTC	2 cut(s)	104, 283
SduI	GDGCHC	2 cut(s)	50, 261
SinI	GGWCC	1 cut(s)	366
SpeI	ACTAGT	1 cut(s)	692
Sse9I	AATT	7 cut(s)	274, 329, 343, 429, 441, 497, 721
SspMI	CTAG	2 cut(s)	225, 693
TaaI	ACNGT	1 cut(s)	565
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	633
TasI	AATT	7 cut(s)	274, 329, 343, 429, 441, 497, 721
TatI	WGTACW	2 cut(s)	570, 645
TfiI	GAWTC	2 cut(s)	130, 354
Tru1I	TTAA	3 cut(s)	233, 360, 444
Tru9I	TTAA	3 cut(s)	233, 360, 444
TscAI	CASTG	1 cut(s)	540
TseI	GCWGC	2 cut(s)	527, 587
TspDTI	ATGAA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	540
Tth111I	GACNNNGTC	1 cut(s)	113
Van91I	CCANNNNNTGG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	366
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	2 cut(s)	343, 721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XspI	CTAG	2 cut(s)	225, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.