RLG00000021217

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
73024756 .. 73025649
894 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021217

Sequence Viewer

Length: 894 bp
ATGTCACTGCCTGTGAAGGGTCAGGAGAGCAGCAGCGGTACCACCAAGTCGCCGGAGGAAACTCAGGCCACCTTCACCGGCATGTTCCCCGTGAACCTCCATTCCATCCTCGCCACCAACACCACCCAGCCCTTACTCCCTCTCTCCTTGTTCGCCGATAACTACTGCAGCCTCTCCGCTCCCAAAACCGAACCGCCGCTCTACCAGCAGCCACCACAGTACGGCGCCGTTTCGGCTCAGACGTCGTCCCTCAACGACTACTGCTCCATCTTCAACCACCTCCCGGACCTCCTCTCCCTCGACCACTCTCCCTACAAGCGCCCTCGCCTCCTCGACCACCAAACCCTAGCCTCCTCCTACCAGCTCTACCCGACGCCGCCAGAATCTCAGCCGGCTCCCTTGGTGGTGCCACGTGGCAGCAGCCTGGCGCGGAAGAGGCGTCAGACTCTGAGCGACAAGATGCGGTGCCTGCAGAAGCTGCTGCCGTGGGAGAAGAAGATGGACAACGCCACCACGCTCGAGGCGGCGCACCGCTACGTCCGGTTCCTCCAGGCTCAGGTCGCCGCCCTCCAGGCCATGCCCATCGTCGCCTCCGACTCTGCCGGCTCCCTCCCCGTTCTGACGGGAGGCAGCGTCGGCGGCGGCACCGGTGAGGTGGAGGTGCTGTCCAGGCTGAGCCGGAGCCAGATGCTGCAGGTGGCGGTGAACTCGCCGGTGGCGCAGATGAGGATGTCGGATCTCGGGAGGTGTGTGTTCTCGGTGGAGCAACTGGCTTTGCTGAACAAGAAGAGCGTCATCAGGTCTGCCATGGTCTCTGCTTCAGGCCATTACTATCCTACTACTACTAGCTTCATTGACTCTTCTGCTTCTGCTTCTGCCTCTACCACTAATTAA

Protein Analysis

298

Amino Acids

32.08

Weight (kDa)

9.01

Isoelectric Point (pI)

59.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 143 - 184 5.5e-06 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 685
AatII GACGTC 1 cut(s) 245
Acc36I ACCTGC 1 cut(s) 685
Acc65I GGTACC 1 cut(s) 38
AccB1I GGYRCC 5 cut(s) 38, 224, 406, 465, 644
AccBSI CCGCTC 2 cut(s) 179, 199
AccII CGCG 1 cut(s) 430
AclWI GGATC 1 cut(s) 744
AcuI CTGAAG 1 cut(s) 804
AcvI CACGTG 1 cut(s) 413
AcyI GRCGYC 4 cut(s) 225, 242, 374, 439
AfaI GTAC 2 cut(s) 40, 221
AfiI CCNNNNNNNGG 4 cut(s) 17, 221, 283, 556
AgeI ACCGGT 1 cut(s) 647
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 4 cut(s) 423, 549, 570, 668
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 3 cut(s) 364, 478, 849
AluI AGCT 3 cut(s) 364, 478, 849
Alw26I GTCTC 1 cut(s) 817
AlwI GGATC 1 cut(s) 744
AlwNI CAGNNNCTG 3 cut(s) 448, 478, 691
Ama87I CYCGRG 2 cut(s) 518, 740
AoxI GGCC 3 cut(s) 66, 573, 823
AsiGI ACCGGT 1 cut(s) 647
Asp718I GGTACC 1 cut(s) 38
AspLEI GCGC 5 cut(s) 227, 321, 430, 529, 721
AspS9I GGNCC 1 cut(s) 286
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 3 cut(s) 67, 662, 715
AvaI CYCGRG 2 cut(s) 518, 740
AvaII GGWCC 1 cut(s) 286
BanI GGYRCC 5 cut(s) 38, 224, 406, 465, 644
BbrPI CACGTG 1 cut(s) 413
BccI CCATC 4 cut(s) 113, 275, 493, 590
BceAI ACGGC 3 cut(s) 212, 238, 469
BciT130I CCWGG 4 cut(s) 425, 551, 572, 670
BcnI CCSGG 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 817
BfaI CTAG 2 cut(s) 347, 846
BfmI CTRYAG 3 cut(s) 166, 470, 692
BfoI RGCGCY 2 cut(s) 228, 322
BfuAI ACCTGC 1 cut(s) 685
BglI GCCNNNNNGGC 2 cut(s) 233, 572
BlpI GCTNAGC 1 cut(s) 674
Bme1390I CCNGG 5 cut(s) 284, 425, 551, 572, 670
Bme18I GGWCC 1 cut(s) 286
BmeT110I CYCGRG 2 cut(s) 518, 740
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 9 cut(s) 40, 226, 396, 408, 467, 545, 607, 646, 683
BmrFI CCNGG 5 cut(s) 284, 425, 551, 572, 670
BmsI GCATC 2 cut(s) 450, 678
BpmI CTGGAG 2 cut(s) 533, 554
Bpu10I CCTNAGC 1 cut(s) 555
Bpu1102I GCTNAGC 1 cut(s) 674
BpuMI CCSGG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 413
BsaHI GRCGYC 4 cut(s) 225, 242, 374, 439
BsaI GGTCTC 1 cut(s) 817
BsaJI CCNNGG 3 cut(s) 399, 485, 807
BsaWI WCCGGW 2 cut(s) 540, 647
BsaXI ACNNNNNCTCC 8 cut(s) 248, 278, 278, 308, 618, 648, 650, 680
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 221, 283, 556
Bse118I RCCGGY 5 cut(s) 77, 391, 602, 647, 712
Bse1I ACTGG 1 cut(s) 774
BseBI CCWGG 4 cut(s) 425, 551, 572, 670
BseDI CCNNGG 3 cut(s) 399, 485, 807
BseGI GGATG 2 cut(s) 105, 735
BseLI CCNNNNNNNGG 4 cut(s) 17, 221, 283, 556
BseMII CTCAG 6 cut(s) 77, 251, 401, 440, 569, 665
BseNI ACTGG 1 cut(s) 774
BseRI GAGGAG 3 cut(s) 281, 320, 343
BseYI CCCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 430
BshFI GGCC 3 cut(s) 68, 575, 825
BshNI GGYRCC 5 cut(s) 38, 224, 406, 465, 644
BshTI ACCGGT 1 cut(s) 647
BsiHKCI CYCGRG 2 cut(s) 518, 740
BsiSI CCGG 9 cut(s) 53, 78, 284, 392, 541, 603, 648, 679, 713
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 4 cut(s) 17, 221, 283, 556
BsmAI GTCTC 1 cut(s) 817
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 3 cut(s) 68, 575, 825
Bso31I GGTCTC 1 cut(s) 817
BsoBI CYCGRG 2 cut(s) 518, 740
Bsp143I GATC 1 cut(s) 736
Bsp1720I GCTNAGC 1 cut(s) 674
Bsp19I CCATGG 1 cut(s) 807
BspANI GGCC 3 cut(s) 68, 575, 825
BspCNI CTCAG 6 cut(s) 76, 250, 400, 441, 568, 666
BspFNI CGCG 1 cut(s) 430
BspLI GGNNCC 9 cut(s) 40, 226, 396, 408, 467, 545, 607, 646, 683
BspMAI CTGCAG 3 cut(s) 170, 474, 696
BspMI ACCTGC 1 cut(s) 685
BspPI GGATC 1 cut(s) 744
BspQI GCTCTTC 1 cut(s) 782
BspT107I GGYRCC 5 cut(s) 38, 224, 406, 465, 644
BspTNI GGTCTC 1 cut(s) 817
BsrBI CCGCTC 2 cut(s) 179, 199
BsrFI RCCGGY 5 cut(s) 77, 391, 602, 647, 712
BsrI ACTGG 1 cut(s) 774
BssAI RCCGGY 5 cut(s) 77, 391, 602, 647, 712
BssECI CCNNGG 3 cut(s) 399, 485, 807
BssMI GATC 1 cut(s) 736
BssNI GRCGYC 4 cut(s) 225, 242, 374, 439
BssT1I CCWWGG 2 cut(s) 399, 807
Bst2UI CCWGG 4 cut(s) 425, 551, 572, 670
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 3 cut(s) 428, 782, 865
BstACI GRCGYC 4 cut(s) 225, 242, 374, 439
BstAPI GCANNNNNTGC 1 cut(s) 478
BstBAI YACGTR 1 cut(s) 413
BstC8I GCNNGC 3 cut(s) 393, 470, 604
BstDEI CTNAG 6 cut(s) 63, 237, 387, 449, 555, 674
BstDSI CCRYGG 2 cut(s) 485, 807
BstF5I GGATG 2 cut(s) 105, 735
BstFNI CGCG 1 cut(s) 430
BstH2I RGCGCY 2 cut(s) 228, 322
BstHHI GCGC 5 cut(s) 227, 321, 430, 529, 721
BstKTI GATC 1 cut(s) 739
BstMAI GTCTC 1 cut(s) 817
BstMBI GATC 1 cut(s) 736
BstNI CCWGG 4 cut(s) 425, 551, 572, 670
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 5 cut(s) 282, 423, 549, 570, 668
BstSFI CTRYAG 3 cut(s) 166, 470, 692
BstUI CGCG 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
BsuRI GGCC 3 cut(s) 68, 575, 825
BtgI CCRYGG 2 cut(s) 485, 807
BtsCI GGATG 2 cut(s) 105, 735
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 5
BveI ACCTGC 1 cut(s) 685
Cac8I GCNNGC 3 cut(s) 393, 470, 604
CaiI CAGNNNCTG 3 cut(s) 448, 478, 691
CfoI GCGC 5 cut(s) 227, 321, 430, 529, 721
Cfr10I RCCGGY 5 cut(s) 77, 391, 602, 647, 712
Cfr13I GGNCC 1 cut(s) 286
CseI GACGC 4 cut(s) 382, 428, 622, 781
Csp6I GTAC 2 cut(s) 39, 220
CspAI ACCGGT 1 cut(s) 647
CviAII CATG 3 cut(s) 82, 577, 808
CviQI GTAC 2 cut(s) 39, 220
DdeI CTNAG 6 cut(s) 63, 237, 387, 449, 555, 674
DinI GGCGCC 1 cut(s) 226
DpnI GATC 1 cut(s) 738
DpnII GATC 1 cut(s) 736
Eam1104I CTCTTC 3 cut(s) 428, 782, 865
EarI CTCTTC 3 cut(s) 428, 782, 865
Eco130I CCWWGG 2 cut(s) 399, 807
Eco31I GGTCTC 1 cut(s) 817
Eco47I GGWCC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 804
Eco72I CACGTG 1 cut(s) 413
Eco88I CYCGRG 2 cut(s) 518, 740
EcoRII CCWGG 4 cut(s) 423, 549, 570, 668
EcoT14I CCWWGG 2 cut(s) 399, 807
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
ErhI CCWWGG 2 cut(s) 399, 807
FaeI CATG 3 cut(s) 85, 580, 811
FaiI YATR 3 cut(s) 83, 578, 809
FaqI GGGAC 1 cut(s) 232
FatI CATG 3 cut(s) 81, 576, 807
FokI GGATG 2 cut(s) 92, 742
FspBI CTAG 2 cut(s) 347, 846
GlaI GCGC 5 cut(s) 226, 320, 429, 528, 720
GsaI CCCAGC 1 cut(s) 130
GsuI CTGGAG 2 cut(s) 533, 554
HaeII RGCGCY 2 cut(s) 228, 322
HaeIII GGCC 3 cut(s) 68, 575, 825
HapII CCGG 9 cut(s) 53, 78, 284, 392, 541, 603, 648, 679, 713
HgaI GACGC 4 cut(s) 382, 428, 622, 781
HhaI GCGC 5 cut(s) 227, 321, 430, 529, 721
Hin1I GRCGYC 4 cut(s) 225, 242, 374, 439
Hin1II CATG 3 cut(s) 85, 580, 811
Hin6I GCGC 5 cut(s) 225, 319, 428, 527, 719
HinP1I GCGC 5 cut(s) 225, 319, 428, 527, 719
HinfI GANTC 4 cut(s) 383, 445, 596, 857
HpaII CCGG 9 cut(s) 53, 78, 284, 392, 541, 603, 648, 679, 713
HphI GGTGA 3 cut(s) 67, 662, 715
Hpy166II GTNNAC 2 cut(s) 94, 706
Hpy188I TCNGA 6 cut(s) 240, 444, 450, 595, 621, 736
Hpy188III TCNNGA 2 cut(s) 23, 742
Hpy8I GTNNAC 2 cut(s) 94, 706
Hpy99I CGWCG 4 cut(s) 247, 376, 590, 638
HpyAV CCTTC 2 cut(s) 10, 82
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 3 cut(s) 242, 412, 537
HpyCH4V TGCA 3 cut(s) 168, 472, 694
HpyF3I CTNAG 6 cut(s) 63, 237, 387, 449, 555, 674
HpySE526I ACGT 3 cut(s) 242, 412, 537
Hsp92I GRCGYC 4 cut(s) 225, 242, 374, 439
Hsp92II CATG 3 cut(s) 85, 580, 811
HspAI GCGC 5 cut(s) 225, 319, 428, 527, 719
KasI GGCGCC 1 cut(s) 224
KpnI GGTACC 1 cut(s) 42
KroI GCCGGC 2 cut(s) 391, 602
KroNI GCCGGC 2 cut(s) 393, 604
Kzo9I GATC 1 cut(s) 736
LguI GCTCTTC 1 cut(s) 782
LmnI GCTCC 6 cut(s) 184, 269, 400, 611, 681, 763
LweI GCATC 2 cut(s) 450, 678
MaeI CTAG 2 cut(s) 347, 846
MaeII ACGT 3 cut(s) 242, 412, 537
MaeIII GTNAC 1 cut(s) 3
MalI GATC 1 cut(s) 738
MbiI CCGCTC 2 cut(s) 179, 199
MboI GATC 1 cut(s) 736
MboII GAAGA 6 cut(s) 262, 445, 505, 508, 799, 852
MflI RGATCY 1 cut(s) 736
MluCI AATT 1 cut(s) 889
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 3 cut(s) 439, 590, 851
MmeI TCCRAC 2 cut(s) 618, 714
MroNI GCCGGC 2 cut(s) 391, 602
MseI TTAA 1 cut(s) 892
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 9 cut(s) 53, 78, 284, 392, 541, 603, 648, 679, 713
MspR9I CCNGG 5 cut(s) 284, 425, 551, 572, 670
MvaI CCWGG 4 cut(s) 425, 551, 572, 670
MvnI CGCG 1 cut(s) 430
NaeI GCCGGC 2 cut(s) 393, 604
NarI GGCGCC 1 cut(s) 225
NciI CCSGG 1 cut(s) 284
NcoI CCATGG 1 cut(s) 807
NdeII GATC 1 cut(s) 736
NgoMIV GCCGGC 2 cut(s) 391, 602
NlaIII CATG 3 cut(s) 85, 580, 811
NlaIV GGNNCC 9 cut(s) 40, 226, 396, 408, 467, 545, 607, 646, 683
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 85
PaeR7I CTCGAG 1 cut(s) 518
PaqCI CACCTGC 1 cut(s) 685
PciSI GCTCTTC 1 cut(s) 782
PcsI WCGNNNNNNNCGW 2 cut(s) 239, 591
PdiI GCCGGC 2 cut(s) 393, 604
PfeI GAWTC 1 cut(s) 383
PflFI GACNNNGTC 1 cut(s) 244
PfoI TCCNGGA 1 cut(s) 282
PinAI ACCGGT 1 cut(s) 647
PleI GAGTC 3 cut(s) 439, 590, 851
PluTI GGCGCC 1 cut(s) 228
PmaCI CACGTG 1 cut(s) 413
PmlI CACGTG 1 cut(s) 413
PpsI GAGTC 3 cut(s) 439, 590, 851
Ppu21I YACGTR 1 cut(s) 413
Psp6I CCWGG 4 cut(s) 423, 549, 570, 668
PspCI CACGTG 1 cut(s) 413
PspFI CCCAGC 1 cut(s) 126
PspGI CCWGG 4 cut(s) 423, 549, 570, 668
PspN4I GGNNCC 9 cut(s) 40, 226, 396, 408, 467, 545, 607, 646, 683
PspPI GGNCC 1 cut(s) 286
PspXI VCTCGAGB 1 cut(s) 518
PstI CTGCAG 3 cut(s) 170, 474, 696
PstNI CAGNNNCTG 3 cut(s) 448, 478, 691
PsuI RGATCY 1 cut(s) 736
PsyI GACNNNGTC 1 cut(s) 244
RsaI GTAC 2 cut(s) 40, 221
RsaNI GTAC 2 cut(s) 39, 220
RseI CAYNNNNRTG 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 782
SaqAI TTAA 1 cut(s) 892
Sau3AI GATC 1 cut(s) 736
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 3 cut(s) 439, 590, 851
ScrFI CCNGG 5 cut(s) 284, 425, 551, 572, 670
SfaNI GCATC 2 cut(s) 450, 678
SfcI CTRYAG 3 cut(s) 166, 470, 692
SfoI GGCGCC 1 cut(s) 226
Sfr274I CTCGAG 1 cut(s) 518
SgrAI CRCCGGYG 2 cut(s) 647, 712
SinI GGWCC 1 cut(s) 286
SlaI CTCGAG 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 1 cut(s) 889
SspDI GGCGCC 1 cut(s) 224
SspMI CTAG 2 cut(s) 347, 846
StyD4I CCNGG 5 cut(s) 282, 423, 549, 570, 668
StyI CCWWGG 2 cut(s) 399, 807
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 3 cut(s) 245, 415, 540
TaqI TCGA 3 cut(s) 300, 333, 519
TasI AATT 1 cut(s) 889
TauI GCSGC 6 cut(s) 199, 379, 527, 566, 642, 645
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 892
Tru9I TTAA 1 cut(s) 892
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 841
TspRI CASTG 1 cut(s) 12
Tth111I GACNNNGTC 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 286
XceI RCATGY 1 cut(s) 85
XhoI CTCGAG 1 cut(s) 518
XspI CTAG 2 cut(s) 347, 846
ZraI GACGTC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.