Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005417

Physical Location & Seq

Genomic Coordinates Forward (+)

6630397 .. 6631650

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g08800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGATGAGACTGAGAGAGAGCTGCGTAGGGCAATTCTGTCATTGTCGGGCAGAGCTGACGGAGGTGGAGAGAAGGACACTGCTTGTGTCACTACTGGTTGGGATGAGGAGGAGGCCACCTTCAACGCCATCATGTCCTCCGGCATCACCTTCCAGCCCTTCCTCCCCATCACCGCCTCCGCGTCCGCCGCTCACCACCACCAAAACCCAATGCTGCCGTCATCCCCGTCTCTAAAACCCCTACCCTACTCCAATTTCGCTCAAGACACCCTCACTAATGTTAGCCCCGCCACCGCCGCCGCCTCGGACTACTCCCATATCCCGAGGTTGGCTAAACACGAACCCATTTCCAGCTACCAGGACTACTTCCCAACCCCAACATTTTACGATTACCCACCTGATCTCAACTTGCTGCCCAACACCCATTTCTCTCCTCCTCCGCCGCGTCATCTCCAGCACCACGACTGTGAATCCAACGACTACTCCTCCATCTTCCAGCACTTGCCAGATCTCCTTCCTCTCGACCCATCTAACTATTTCCCATGTTCTTCATCTTCCTCATCATCCTACAAACGCCCCCGATTCGTCGACTCTCATCACTTCTGCTACCCGTCAGCTTCTTTCGCCGCCGCCGTCGCCGCCCAACATGTCCATCCTTATCCTCCTCTACCCCATTTCAACAACACCACTCTGTTCCCACCTCTTAACAACAACTATGGCTTCCGACCCTCCTCTTCTTCTCAATCTTCATCACACGCCAACGCTCCTACTCCCCCTCCCCCTCCTCCTCCGGCTCCCCAGGTTAAAACTAAGAGAAGGATTACAACCCCATCCCCGTCCCTACCCGGCAGTGCTCTCGCTCGCGAGCGGAGGCAGAGGCTGAGCGACAAGACTCGCTGCCTGCAGAAGCTCCTCCCCTGGGACAAGAAAATGGATTCCGCCACCACTTACGGAGAGGCCTACAAGTACATCCAGTTCCTCCAGGCTCAGCTCTCCGCCCTCCAAACCATGCCTGTCCTCACTCCGCCCACCACTTCCATTGGTACCAGTAGCGGCCGCACCGTCATGTACTCCCGCGGCTGCTGTGTGTTTTCGGTGGAGCAGTTGGATCAAATCAGCCGCCGATTCAGCCGCAAAATGGGGTCCTCCACCGCCTCCAAATCATCTCCACCGTCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

394

Amino Acids

43.27

Weight (kDa)

8.59

Isoelectric Point (pI)

70.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22100
fragaria_vesca	FvH4_1g29760 FvH4_6g43750
malus_domestica	MD17G1091100.v1.1
prunus_persica	Prupe.3G222500_v2.0.a1
pyrus_communis	pycom17g08800
rosa_chinensis	RchiOBHm_Chr2g0160481
rosa_laevigata	RLG00000000602 RLG00000006966 RLG00000012534 RLG00000020740 RLG00000021217 RLG00000035791
rosa_multiflora	Rmu_sc0002771.1_g000001 Rmu_ssc0000110.1_g000012
rosa_roxburghii	Rroxscaffold_2G00089790
rosa_rugosa	Rorug02G0234500 Rorug02G0483400 Rorug04G0068000
rosa_samantha	Rh2AG291900 Rh2AG548600 Rh2BG222400 Rh2BG562200 Rh2CG532900 Rh2DG571000 Rh7CG232200 Rh7CG308300 Rh7DG351600
rosa_wichuraiana	Rw2G045420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1043
AccB1I	GGYRCC	1 cut(s)	1043
AccBSI	CCGCTC	2 cut(s)	191, 868
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	4 cut(s)	182, 445, 864, 1077
AclWI	GGATC	1 cut(s)	1116
AcoI	YGGCCR	1 cut(s)	1054
AfaI	GTAC	3 cut(s)	968, 1045, 1070
AfiI	CCNNNNNNNGG	3 cut(s)	328, 919, 1138
AflIII	ACRYGT	1 cut(s)	646
AgsI	TTSAA	2 cut(s)	124, 679
AjnI	CCWGG	4 cut(s)	357, 798, 917, 981
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AleI	CACNNNNGTG	1 cut(s)	465
AluBI	AGCT	6 cut(s)	22, 56, 354, 617, 910, 991
AluI	AGCT	6 cut(s)	22, 56, 354, 617, 910, 991
Alw21I	GWGCWC	1 cut(s)	856
Alw26I	GTCTC	2 cut(s)	2, 234
AlwI	GGATC	1 cut(s)	1116
AlwNI	CAGNNNCTG	1 cut(s)	880
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	3 cut(s)	114, 957, 1054
ApeKI	GCWGC	5 cut(s)	22, 214, 412, 897, 1080
Asp718I	GGTACC	1 cut(s)	1043
AspS9I	GGNCC	1 cut(s)	1143
AsuC2I	CCSGG	1 cut(s)	846
AsuHPI	GGTGA	3 cut(s)	139, 163, 185
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	1143
BanI	GGYRCC	1 cut(s)	1043
Bbv12I	GWGCWC	1 cut(s)	856
BbvI	GCAGC	5 cut(s)	9, 201, 399, 884, 1067
BccI	CCATC	6 cut(s)	137, 176, 497, 535, 660, 838
BceAI	ACGGC	2 cut(s)	202, 617
BcgI	CGANNNNNNTGC	2 cut(s)	838, 872
BciT130I	CCWGG	4 cut(s)	359, 800, 919, 983
BcnI	CCSGG	1 cut(s)	846
BcoDI	GTCTC	2 cut(s)	2, 234
BfmI	CTRYAG	1 cut(s)	902
BglII	AGATCT	1 cut(s)	508
BlpI	GCTNAGC	2 cut(s)	881, 987
Bme1390I	CCNGG	5 cut(s)	359, 800, 846, 919, 983
Bme18I	GGWCC	1 cut(s)	1143
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	1143
BmiI	GGNNCC	3 cut(s)	795, 1045, 1144
BmrFI	CCNGG	5 cut(s)	359, 800, 846, 919, 983
BmsI	GCATC	1 cut(s)	153
BpmI	CTGGAG	2 cut(s)	437, 965
Bpu1102I	GCTNAGC	2 cut(s)	881, 987
BpuEI	CTTGAG	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	846
BsaJI	CCNNGG	6 cut(s)	303, 323, 798, 917, 918, 1075
BsaXI	ACNNNNNCTCC	6 cut(s)	467, 470, 497, 500, 760, 790
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 919, 1138
Bse1I	ACTGG	3 cut(s)	100, 973, 1047
BseBI	CCWGG	4 cut(s)	359, 800, 919, 983
BseDI	CCNNGG	6 cut(s)	303, 323, 798, 917, 918, 1075
BseGI	GGATG	7 cut(s)	10, 109, 221, 563, 652, 830, 969
BseLI	CCNNNNNNNGG	3 cut(s)	328, 919, 1138
BseMII	CTCAG	2 cut(s)	872, 1001
BseNI	ACTGG	3 cut(s)	100, 973, 1047
BseX3I	CGGCCG	1 cut(s)	1054
BseXI	GCAGC	5 cut(s)	9, 201, 399, 884, 1067
Bsh1236I	CGCG	4 cut(s)	182, 445, 864, 1077
Bsh1285I	CGRYCG	1 cut(s)	1057
BshFI	GGCC	3 cut(s)	116, 959, 1056
BshNI	GGYRCC	1 cut(s)	1043
BsiEI	CGRYCG	1 cut(s)	1057
BsiHKAI	GWGCWC	1 cut(s)	856
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	141, 791, 846
BslFI	GGGAC	2 cut(s)	823, 935
BslI	CCNNNNNNNGG	3 cut(s)	328, 919, 1138
BsmAI	GTCTC	2 cut(s)	2, 234
BsmBI	CGTCTC	1 cut(s)	234
BsmFI	GGGAC	2 cut(s)	823, 935
BsnI	GGCC	3 cut(s)	116, 959, 1056
BsoBI	CYCGRG	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	856
Bsp143I	GATC	3 cut(s)	400, 508, 1108
Bsp1720I	GCTNAGC	2 cut(s)	881, 987
Bsp68I	TCGCGA	1 cut(s)	864
BspANI	GGCC	3 cut(s)	116, 959, 1056
BspCNI	CTCAG	3 cut(s)	4, 873, 1000
BspFNI	CGCG	4 cut(s)	182, 445, 864, 1077
BspLI	GGNNCC	3 cut(s)	795, 1045, 1144
BspMAI	CTGCAG	1 cut(s)	906
BspPI	GGATC	1 cut(s)	1116
BspT107I	GGYRCC	1 cut(s)	1043
BsrBI	CCGCTC	2 cut(s)	191, 868
BsrI	ACTGG	3 cut(s)	100, 973, 1047
BssECI	CCNNGG	6 cut(s)	303, 323, 798, 917, 918, 1075
BssMI	GATC	3 cut(s)	400, 508, 1108
Bst2UI	CCWGG	4 cut(s)	359, 800, 919, 983
Bst4CI	ACNGT	3 cut(s)	467, 1063, 1173
Bst6I	CTCTTC	1 cut(s)	739
BstC8I	GCNNGC	3 cut(s)	862, 866, 902
BstDEI	CTNAG	4 cut(s)	12, 810, 881, 987
BstDSI	CCRYGG	1 cut(s)	1075
BstF5I	GGATG	7 cut(s)	10, 109, 221, 563, 652, 830, 969
BstFNI	CGCG	4 cut(s)	182, 445, 864, 1077
BstKTI	GATC	3 cut(s)	403, 511, 1111
BstMAI	GTCTC	2 cut(s)	2, 234
BstMBI	GATC	3 cut(s)	400, 508, 1108
BstMCI	CGRYCG	1 cut(s)	1057
BstMWI	GCNNNNNNNGC	6 cut(s)	188, 296, 623, 635, 638, 1128
BstNI	CCWGG	4 cut(s)	359, 800, 919, 983
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	5 cut(s)	357, 798, 844, 917, 981
BstSFI	CTRYAG	1 cut(s)	902
BstUI	CGCG	4 cut(s)	182, 445, 864, 1077
BstV1I	GCAGC	5 cut(s)	9, 201, 399, 884, 1067
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BstZI	CGGCCG	1 cut(s)	1054
BsuRI	GGCC	3 cut(s)	116, 959, 1056
BtgI	CCRYGG	1 cut(s)	1075
BtsCI	GGATG	7 cut(s)	10, 109, 221, 563, 652, 830, 969
BtsI	GCAGTG	2 cut(s)	78, 856
BtsIMutI	CAGTG	2 cut(s)	78, 856
BtuMI	TCGCGA	1 cut(s)	864
Cac8I	GCNNGC	3 cut(s)	862, 866, 902
CaiI	CAGNNNCTG	1 cut(s)	880
CciNI	GCGGCCGC	1 cut(s)	1054
Cfr13I	GGNCC	1 cut(s)	1143
Cfr42I	CCGCGG	1 cut(s)	1078
CseI	GACGC	2 cut(s)	171, 434
Csp6I	GTAC	3 cut(s)	967, 1044, 1069
CspCI	CAANNNNNGTGG	2 cut(s)	1021, 1056
CviAII	CATG	5 cut(s)	133, 543, 647, 1009, 1066
CviQI	GTAC	3 cut(s)	967, 1044, 1069
DdeI	CTNAG	4 cut(s)	12, 810, 881, 987
DpnI	GATC	3 cut(s)	402, 510, 1110
DpnII	GATC	3 cut(s)	400, 508, 1108
EaeI	YGGCCR	1 cut(s)	1054
EagI	CGGCCG	1 cut(s)	1054
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
EciI	GGCGGA	5 cut(s)	175, 429, 928, 985, 1014
EclXI	CGGCCG	1 cut(s)	1054
Eco147I	AGGCCT	1 cut(s)	959
Eco47I	GGWCC	1 cut(s)	1143
Eco52I	CGGCCG	1 cut(s)	1054
Eco88I	CYCGRG	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	1143
EcoRII	CCWGG	4 cut(s)	357, 798, 917, 981
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	5 cut(s)	136, 546, 650, 1012, 1069
FaiI	YATR	8 cut(s)	134, 318, 544, 648, 717, 1010, 1067, 1180
FaqI	GGGAC	2 cut(s)	823, 935
FatI	CATG	5 cut(s)	132, 542, 646, 1008, 1065
FauI	CCCGC	2 cut(s)	295, 1082
FblI	GTMKAC	1 cut(s)	588
FokI	GGATG	7 cut(s)	17, 116, 208, 550, 639, 817, 956
GsuI	CTGGAG	2 cut(s)	437, 965
HaeIII	GGCC	3 cut(s)	116, 959, 1056
HapII	CCGG	3 cut(s)	141, 791, 846
HgaI	GACGC	2 cut(s)	171, 434
Hin1II	CATG	5 cut(s)	136, 546, 650, 1012, 1069
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	6 cut(s)	470, 582, 590, 892, 935, 1125
HpaII	CCGG	3 cut(s)	141, 791, 846
HphI	GGTGA	3 cut(s)	139, 163, 185
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	2 cut(s)	307, 725
Hpy188III	TCNNGA	4 cut(s)	263, 322, 521, 863
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	2 cut(s)	590, 638
HpyAV	CCTTC	6 cut(s)	67, 130, 160, 169, 524, 810
HpyCH4III	ACNGT	3 cut(s)	467, 1063, 1173
HpyCH4V	TGCA	1 cut(s)	904
HpyF10VI	GCNNNNNNNGC	6 cut(s)	188, 296, 623, 635, 638, 1128
HpyF3I	CTNAG	4 cut(s)	12, 810, 881, 987
Hsp92II	CATG	5 cut(s)	136, 546, 650, 1012, 1069
KpnI	GGTACC	1 cut(s)	1047
KspI	CCGCGG	1 cut(s)	1078
Kzo9I	GATC	3 cut(s)	400, 508, 1108
LmnI	GCTCC	4 cut(s)	769, 799, 915, 1099
Lsp1109I	GCAGC	5 cut(s)	9, 201, 399, 884, 1067
LweI	GCATC	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	3 cut(s)	402, 510, 1110
MbiI	CCGCTC	2 cut(s)	191, 868
MboI	GATC	3 cut(s)	400, 508, 1108
MboII	GAAGA	6 cut(s)	484, 540, 546, 726, 729, 738
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	856
MluCI	AATT	2 cut(s)	33, 253
MlyI	GAGTC	2 cut(s)	584, 886
MmeI	TCCRAC	3 cut(s)	498, 748, 1086
MseI	TTAA	2 cut(s)	705, 804
MslI	CAYNNNNRTG	2 cut(s)	465, 1064
MspA1I	CMGCKG	1 cut(s)	1077
MspI	CCGG	3 cut(s)	141, 791, 846
MspR9I	CCNGG	5 cut(s)	359, 800, 846, 919, 983
MvaI	CCWGG	4 cut(s)	359, 800, 919, 983
MvnI	CGCG	4 cut(s)	182, 445, 864, 1077
MwoI	GCNNNNNNNGC	6 cut(s)	188, 296, 623, 635, 638, 1128
NciI	CCSGG	1 cut(s)	846
NdeII	GATC	3 cut(s)	400, 508, 1108
NlaIII	CATG	5 cut(s)	136, 546, 650, 1012, 1069
NlaIV	GGNNCC	3 cut(s)	795, 1045, 1144
NmuCI	GTSAC	1 cut(s)	88
NotI	GCGGCCGC	1 cut(s)	1054
NruI	TCGCGA	1 cut(s)	864
NspI	RCATGY	1 cut(s)	650
OliI	CACNNNNGTG	1 cut(s)	465
PasI	CCCWGGG	1 cut(s)	918
PceI	AGGCCT	1 cut(s)	959
PciI	ACATGT	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PfeI	GAWTC	4 cut(s)	470, 582, 935, 1125
PleI	GAGTC	2 cut(s)	584, 886
PpsI	GAGTC	2 cut(s)	584, 886
PpuMI	RGGWCCY	1 cut(s)	1143
PscI	ACATGT	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	1143
Psp6I	CCWGG	4 cut(s)	357, 798, 917, 981
PspGI	CCWGG	4 cut(s)	357, 798, 917, 981
PspN4I	GGNNCC	3 cut(s)	795, 1045, 1144
PspPI	GGNCC	1 cut(s)	1143
PspPPI	RGGWCCY	1 cut(s)	1143
PsrI	GAACNNNNNNTAC	2 cut(s)	959, 991
PstI	CTGCAG	1 cut(s)	906
PstNI	CAGNNNCTG	1 cut(s)	880
PsuI	RGATCY	1 cut(s)	508
RruI	TCGCGA	1 cut(s)	864
RsaI	GTAC	3 cut(s)	968, 1045, 1070
RsaNI	GTAC	3 cut(s)	967, 1044, 1069
RseI	CAYNNNNRTG	2 cut(s)	465, 1064
SacII	CCGCGG	1 cut(s)	1078
SalI	GTCGAC	1 cut(s)	587
SaqAI	TTAA	2 cut(s)	705, 804
Sau3AI	GATC	3 cut(s)	400, 508, 1108
Sau96I	GGNCC	1 cut(s)	1143
SchI	GAGTC	2 cut(s)	584, 886
ScrFI	CCNGG	5 cut(s)	359, 800, 846, 919, 983
SduI	GDGCHC	1 cut(s)	856
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	902
Sfr303I	CCGCGG	1 cut(s)	1078
SgrBI	CCGCGG	1 cut(s)	1078
SinI	GGWCC	1 cut(s)	1143
SmiMI	CAYNNNNRTG	2 cut(s)	465, 1064
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	2 cut(s)	33, 253
SseBI	AGGCCT	1 cut(s)	959
StuI	AGGCCT	1 cut(s)	959
StyD4I	CCNGG	5 cut(s)	357, 798, 844, 917, 981
TaaI	ACNGT	3 cut(s)	467, 1063, 1173
TaqI	TCGA	2 cut(s)	522, 588
TasI	AATT	2 cut(s)	33, 253
TatI	WGTACW	2 cut(s)	966, 1068
TfiI	GAWTC	4 cut(s)	470, 582, 935, 1125
Tru1I	TTAA	2 cut(s)	705, 804
Tru9I	TTAA	2 cut(s)	705, 804
TscAI	CASTG	2 cut(s)	85, 856
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	5 cut(s)	22, 214, 412, 897, 1080
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	540, 738
TspGWI	ACGGA	2 cut(s)	75, 966
TspRI	CASTG	2 cut(s)	85, 856
VpaK11BI	GGWCC	1 cut(s)	1143
XceI	RCATGY	1 cut(s)	650
XmiI	GTMKAC	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.