RLG00000035791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005417
Physical Location & Seq
Forward (+)
71655214 .. 71656583
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035791

Sequence Viewer

Length: 342 bp
ATGCCTATTGTCGCCTCCGACTCCGCCGACTCCCTGCTCATCCTGAAAAGCAACTTCTGCGGCACCGGTGATGTGGAGGTGCTTAAGGCTGGGCACGAGGTGCTGTCTAGGCTGAGCCGGAGCCAGTTGCTCCGATCTGTGCAGAGGTTTTCTCGGTTTCCTCTGATCTGGAGAAGTCGAGAGATGGTGGCTGTGACGGTGGAGAGCGCTGACGTGGGGCACCTGCAGGCATGGATGAGGCCGGTACGGACGAGCAAGCAGGGGTGTTGCTGCGTCGGGGCTGGGACCGGTCGGAGATGGGCTGCAGGTGAGCGACTGGAGAAGACGAAGGCGATCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.52

Weight (kDa)

9.94

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 231, 296
Acc36I ACCTGC 2 cut(s) 231, 296
AccB1I GGYRCC 2 cut(s) 62, 219
AciI CCGC 2 cut(s) 24, 60
AdeI CACNNNGTG 1 cut(s) 100
AfaI GTAC 1 cut(s) 246
AfeI AGCGCT 1 cut(s) 208
AflII CTTAAG 1 cut(s) 83
AgeI ACCGGT 2 cut(s) 65, 287
AjiI CACGTC 1 cut(s) 214
Aor51HI AGCGCT 1 cut(s) 208
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 270, 302
AsiGI ACCGGT 2 cut(s) 65, 287
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 80, 320
AvaII GGWCC 1 cut(s) 285
BaeGI GKGCMC 2 cut(s) 96, 222
BanI GGYRCC 2 cut(s) 62, 219
BauI CACGAG 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 257, 289
BccI CCATC 2 cut(s) 178, 291
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 2 cut(s) 224, 303
BfoI RGCGCY 1 cut(s) 210
BfrI CTTAAG 1 cut(s) 83
BfuAI ACCTGC 2 cut(s) 231, 296
BisI GCNGC 3 cut(s) 61, 271, 303
BlpI GCTNAGC 1 cut(s) 113
BlsI GCNGC 3 cut(s) 62, 272, 304
Bme18I GGWCC 1 cut(s) 285
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 4 cut(s) 64, 122, 221, 286
BpiI GAAGAC 1 cut(s) 329
BplI GAGNNNNNCTC 2 cut(s) 136, 168
BpmI CTGGAG 2 cut(s) 190, 338
Bpu1102I GCTNAGC 1 cut(s) 113
BsaWI WCCGGW 2 cut(s) 65, 287
Bse118I RCCGGY 3 cut(s) 65, 241, 287
Bse1I ACTGG 2 cut(s) 124, 321
BseGI GGATG 2 cut(s) 39, 240
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 2 cut(s) 124, 321
BseSI GKGCMC 2 cut(s) 96, 222
BseXI GCAGC 2 cut(s) 257, 289
BseYI CCCAGC 2 cut(s) 89, 281
BsgI GTGCAG 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 1 cut(s) 241
BshNI GGYRCC 2 cut(s) 62, 219
BshTI ACCGGT 2 cut(s) 65, 287
BsiEI CGRYCG 1 cut(s) 292
BsiSI CCGG 4 cut(s) 66, 118, 242, 288
BslFI GGGAC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 1 cut(s) 241
Bsp1286I GDGCHC 2 cut(s) 96, 222
Bsp143I GATC 3 cut(s) 134, 165, 333
Bsp1720I GCTNAGC 1 cut(s) 113
BspACI CCGC 2 cut(s) 24, 60
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 105
BspLI GGNNCC 4 cut(s) 64, 122, 221, 286
BspMAI CTGCAG 2 cut(s) 228, 307
BspMI ACCTGC 2 cut(s) 231, 296
BspT107I GGYRCC 2 cut(s) 62, 219
BspTI CTTAAG 1 cut(s) 83
BsrFI RCCGGY 3 cut(s) 65, 241, 287
BsrI ACTGG 2 cut(s) 124, 321
BssAI RCCGGY 3 cut(s) 65, 241, 287
BssMI GATC 3 cut(s) 134, 165, 333
BssSI CACGAG 1 cut(s) 95
Bst2BI CACGAG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 199
BstAFI CTTAAG 1 cut(s) 83
BstAPI GCANNNNNTGC 2 cut(s) 57, 100
BstC8I GCNNGC 2 cut(s) 228, 257
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 2 cut(s) 39, 240
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 3 cut(s) 137, 168, 336
BstMBI GATC 3 cut(s) 134, 165, 333
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 57, 100, 109
BstSFI CTRYAG 2 cut(s) 224, 303
BstSLI GKGCMC 2 cut(s) 96, 222
BstV1I GCAGC 2 cut(s) 257, 289
BstV2I GAAGAC 1 cut(s) 329
BsuRI GGCC 1 cut(s) 241
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 39, 240
BveI ACCTGC 2 cut(s) 231, 296
Cac8I GCNNGC 2 cut(s) 228, 257
CfoI GCGC 1 cut(s) 209
Cfr10I RCCGGY 3 cut(s) 65, 241, 287
Cfr13I GGNCC 1 cut(s) 285
CseI GACGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 245
CspAI ACCGGT 2 cut(s) 65, 287
CviAII CATG 1 cut(s) 231
CviJI RGCY 8 cut(s) 89, 112, 117, 123, 191, 241, 281, 302
CviKI_1 RGCY 8 cut(s) 89, 112, 117, 123, 191, 241, 281, 302
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 1 cut(s) 113
DpnI GATC 3 cut(s) 136, 167, 335
DpnII GATC 3 cut(s) 134, 165, 333
DraIII CACNNNGTG 1 cut(s) 100
EciI GGCGGA 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 285
Eco47III AGCGCT 1 cut(s) 208
FaeI CATG 1 cut(s) 234
FaiI YATR 1 cut(s) 232
FaqI GGGAC 1 cut(s) 298
FatI CATG 1 cut(s) 230
Fnu4HI GCNGC 3 cut(s) 61, 271, 303
FokI GGATG 2 cut(s) 26, 247
Fsp4HI GCNGC 3 cut(s) 61, 271, 303
FspBI CTAG 1 cut(s) 108
GlaI GCGC 1 cut(s) 208
GluI GCNGC 3 cut(s) 61, 271, 303
GsaI CCCAGC 2 cut(s) 93, 285
GsuI CTGGAG 2 cut(s) 190, 338
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 241
HapII CCGG 4 cut(s) 66, 118, 242, 288
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 209
Hin1II CATG 1 cut(s) 234
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 2 cut(s) 20, 29
HpaII CCGG 4 cut(s) 66, 118, 242, 288
HphI GGTGA 2 cut(s) 80, 320
Hpy188I TCNGA 4 cut(s) 19, 134, 165, 294
Hpy188III TCNNGA 3 cut(s) 43, 169, 179
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 3 cut(s) 142, 226, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 100, 109
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 1 cut(s) 234
HspAI GCGC 1 cut(s) 207
Kzo9I GATC 3 cut(s) 134, 165, 333
LmnI GCTCC 2 cut(s) 120, 135
Lsp1109I GCAGC 2 cut(s) 257, 289
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 193
MalI GATC 3 cut(s) 136, 167, 335
MboI GATC 3 cut(s) 134, 165, 333
MboII GAAGA 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 96, 222
MlyI GAGTC 2 cut(s) 14, 23
MmeI TCCRAC 2 cut(s) 42, 272
MnlI CCTC 6 cut(s) 25, 70, 91, 138, 171, 231
MseI TTAA 1 cut(s) 84
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 4 cut(s) 66, 118, 242, 288
MwoI GCNNNNNNNGC 3 cut(s) 57, 100, 109
NdeII GATC 3 cut(s) 134, 165, 333
NlaIII CATG 1 cut(s) 234
NlaIV GGNNCC 4 cut(s) 64, 122, 221, 286
NmuCI GTSAC 1 cut(s) 193
PaqCI CACCTGC 2 cut(s) 231, 296
PinAI ACCGGT 2 cut(s) 65, 287
PkrI GCNGC 3 cut(s) 62, 272, 304
PleI GAGTC 2 cut(s) 14, 23
PpsI GAGTC 2 cut(s) 14, 23
PspFI CCCAGC 2 cut(s) 89, 281
PspN4I GGNNCC 4 cut(s) 64, 122, 221, 286
PspPI GGNCC 1 cut(s) 285
PstI CTGCAG 2 cut(s) 228, 307
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 3 cut(s) 61, 271, 303
Sau3AI GATC 3 cut(s) 134, 165, 333
Sau96I GGNCC 1 cut(s) 285
SbfI CCTGCAGG 1 cut(s) 228
SchI GAGTC 2 cut(s) 14, 23
SdaI CCTGCAGG 1 cut(s) 228
SduI GDGCHC 2 cut(s) 96, 222
SetI ASST 6 cut(s) 81, 102, 149, 216, 225, 310
SfcI CTRYAG 2 cut(s) 224, 303
SgrAI CRCCGGYG 1 cut(s) 65
SinI GGWCC 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse8387I CCTGCAGG 1 cut(s) 228
SsiI CCGC 2 cut(s) 24, 60
SspMI CTAG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 178
TauI GCSGC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 2 cut(s) 270, 302
Tsp45I GTSAC 1 cut(s) 193
TspGWI ACGGA 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 285
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.