Rh2AG548600

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
77837213 .. 77839200
1988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG548600.1

Sequence Viewer

Length: 915 bp
ATGGAGAAAACAGAGAAAGAGAGCTTGATGTCACTGCATCAGGAGAGCAGCAGCAAGTCGCCGGAGGAAACTCAGGCCACCTTCACCGGCATGTTCCCCGTCAACCTCCATTCCATCCTCGCCGCCAACACCACCCAGCCCTTACTCCCTCTCTCCTTGTTCGCCGATAACTACTGCAGCCTCTCCGCCCCCGAAACCGAACCGCCGCTCTTTCACAACCACCACCACCAGGACCAGCCACCACAATACGGCGCCGTTTCGGCTCAGACGTCGTCCCTCATCGACTACTACTCCATCTTCAACCACCTCCCGGACCTCCTCTCCCTCGACCACTCTCCCTACAAGCGCCCTCGCCTCCTCGACCACCAAACCCTAGCCTCCTCCTACCAGCTCTACCCGACGCCGGCCCAATCTCCGCCGGCTCCCGTGGTGGTGCCACGTAGAAGCGGCCTGGCCCGGAAGAGGCGGCAGACGCTGAGCGACAAGATGCGGTGCCTGCAGAAGCTGCTGCCGTGGGAGAAGAAGATGGACAACGCCACCACGCTCGAGGCGGCGCACCGCTACGTCCGGTTCCTCCAGGCTCAGGTCGCCGCCCTCCAGGCCATGCCCATCGTCGCCTCCGACTCGGCCGGCTCCCTCCCCGTCCTGACACGCGGCGTCGGCGGCGGCGGCACCGGTGAGGTGGAGGTGCTGTCCAGGCTGAGCCGGAGCCAGATGCTGCAGGTGGCGGTGAACTCGCCGGTGGCTCAGATGAGGATGTCCGATCTCGGGAGGTGTGTGTTCTCGGTGGAGCAGCTGGCCCTGCTGAACAAGAAGAGCGTCATCAGGTCTGCCATGGTCTCTGCTTCAGGCCATTACTATCCTACTACTACTAGCTTCATTGACTCTTCTGCTTCAGCCTCTACCACTAATTAA

Protein Analysis

304

Amino Acids

33.35

Weight (kDa)

8.71

Isoelectric Point (pI)

65.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 152 - 193 6.5e-06 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 712
AatII GACGTC 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 712
AccB1I GGYRCC 4 cut(s) 251, 433, 492, 671
AccBSI CCGCTC 1 cut(s) 208
AccII CGCG 1 cut(s) 654
AcoI YGGCCR 1 cut(s) 627
AcuI CTGAAG 2 cut(s) 831, 879
AcyI GRCGYC 4 cut(s) 252, 269, 401, 657
AfiI CCNNNNNNNGG 7 cut(s) 229, 248, 310, 403, 462, 583, 768
AgeI ACCGGT 1 cut(s) 674
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 5 cut(s) 228, 450, 576, 597, 695
AluBI AGCT 5 cut(s) 24, 391, 505, 796, 876
AluI AGCT 5 cut(s) 24, 391, 505, 796, 876
Alw26I GTCTC 1 cut(s) 844
AlwNI CAGNNNCTG 3 cut(s) 475, 505, 718
Ama87I CYCGRG 2 cut(s) 545, 767
AoxI GGCC 8 cut(s) 75, 405, 448, 453, 600, 627, 798, 850
ApeKI GCWGC 7 cut(s) 48, 51, 177, 505, 508, 718, 793
AsiGI ACCGGT 1 cut(s) 674
AspLEI GCGC 3 cut(s) 254, 348, 556
AspS9I GGNCC 5 cut(s) 232, 313, 406, 454, 799
AsuC2I CCSGG 2 cut(s) 311, 457
AsuHPI GGTGA 3 cut(s) 76, 689, 742
AvaI CYCGRG 2 cut(s) 545, 767
AvaII GGWCC 2 cut(s) 232, 313
BanI GGYRCC 4 cut(s) 251, 433, 492, 671
BbvI GCAGC 7 cut(s) 60, 63, 189, 492, 495, 705, 805
BccI CCATC 4 cut(s) 122, 302, 520, 617
BceAI ACGGC 3 cut(s) 239, 265, 496
BciT130I CCWGG 5 cut(s) 230, 452, 578, 599, 697
BcnI CCSGG 2 cut(s) 311, 457
BcoDI GTCTC 1 cut(s) 844
BfaI CTAG 2 cut(s) 374, 873
BfmI CTRYAG 3 cut(s) 175, 497, 719
BfoI RGCGCY 2 cut(s) 255, 349
BfuAI ACCTGC 1 cut(s) 712
BglI GCCNNNNNGGC 2 cut(s) 260, 599
BlpI GCTNAGC 2 cut(s) 476, 701
Bme1390I CCNGG 7 cut(s) 230, 311, 452, 457, 578, 599, 697
Bme18I GGWCC 2 cut(s) 232, 313
BmeT110I CYCGRG 2 cut(s) 545, 767
BmgT120I GGNCC 5 cut(s) 232, 313, 406, 454, 799
BmiI GGNNCC 8 cut(s) 253, 423, 435, 494, 572, 634, 673, 710
BmrFI CCNGG 7 cut(s) 230, 311, 452, 457, 578, 599, 697
BmsI GCATC 3 cut(s) 46, 477, 705
BpmI CTGGAG 2 cut(s) 560, 581
Bpu10I CCTNAGC 1 cut(s) 582
Bpu1102I GCTNAGC 2 cut(s) 476, 701
BpuMI CCSGG 2 cut(s) 311, 457
BsaAI YACGTR 1 cut(s) 440
BsaHI GRCGYC 4 cut(s) 252, 269, 401, 657
BsaI GGTCTC 1 cut(s) 844
BsaJI CCNNGG 3 cut(s) 426, 512, 834
BsaWI WCCGGW 2 cut(s) 567, 674
BsaXI ACNNNNNCTCC 6 cut(s) 275, 305, 305, 335, 677, 707
Bsc4I CCNNNNNNNGG 7 cut(s) 229, 248, 310, 403, 462, 583, 768
Bse118I RCCGGY 6 cut(s) 86, 403, 418, 629, 674, 739
BseBI CCWGG 5 cut(s) 230, 452, 578, 599, 697
BseDI CCNNGG 3 cut(s) 426, 512, 834
BseGI GGATG 2 cut(s) 114, 762
BseLI CCNNNNNNNGG 7 cut(s) 229, 248, 310, 403, 462, 583, 768
BseMII CTCAG 6 cut(s) 86, 278, 467, 596, 692, 761
BseRI GAGGAG 3 cut(s) 308, 347, 370
BseX3I CGGCCG 1 cut(s) 627
BseXI GCAGC 7 cut(s) 60, 63, 189, 492, 495, 705, 805
BseYI CCCAGC 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 654
Bsh1285I CGRYCG 1 cut(s) 630
BshFI GGCC 8 cut(s) 77, 407, 450, 455, 602, 629, 800, 852
BshNI GGYRCC 4 cut(s) 251, 433, 492, 671
BshTI ACCGGT 1 cut(s) 674
BsiEI CGRYCG 1 cut(s) 630
BsiHKCI CYCGRG 2 cut(s) 545, 767
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 7 cut(s) 229, 248, 310, 403, 462, 583, 768
BsmAI GTCTC 1 cut(s) 844
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 8 cut(s) 77, 407, 450, 455, 602, 629, 800, 852
Bso31I GGTCTC 1 cut(s) 844
BsoBI CYCGRG 2 cut(s) 545, 767
Bsp143I GATC 1 cut(s) 763
Bsp1720I GCTNAGC 2 cut(s) 476, 701
Bsp19I CCATGG 1 cut(s) 834
BspANI GGCC 8 cut(s) 77, 407, 450, 455, 602, 629, 800, 852
BspCNI CTCAG 6 cut(s) 85, 277, 468, 595, 693, 760
BspFNI CGCG 1 cut(s) 654
BspLI GGNNCC 8 cut(s) 253, 423, 435, 494, 572, 634, 673, 710
BspMAI CTGCAG 3 cut(s) 179, 501, 723
BspMI ACCTGC 1 cut(s) 712
BspQI GCTCTTC 1 cut(s) 809
BspT107I GGYRCC 4 cut(s) 251, 433, 492, 671
BspTNI GGTCTC 1 cut(s) 844
BsrBI CCGCTC 1 cut(s) 208
BsrFI RCCGGY 6 cut(s) 86, 403, 418, 629, 674, 739
BssAI RCCGGY 6 cut(s) 86, 403, 418, 629, 674, 739
BssECI CCNNGG 3 cut(s) 426, 512, 834
BssMI GATC 1 cut(s) 763
BssNI GRCGYC 4 cut(s) 252, 269, 401, 657
BssT1I CCWWGG 1 cut(s) 834
Bst2UI CCWGG 5 cut(s) 230, 452, 578, 599, 697
Bst6I CTCTTC 3 cut(s) 455, 809, 892
BstACI GRCGYC 4 cut(s) 252, 269, 401, 657
BstAPI GCANNNNNTGC 1 cut(s) 505
BstBAI YACGTR 1 cut(s) 440
BstC8I GCNNGC 5 cut(s) 405, 420, 497, 631, 798
BstDEI CTNAG 6 cut(s) 72, 264, 476, 582, 701, 747
BstDSI CCRYGG 3 cut(s) 426, 512, 834
BstF5I GGATG 2 cut(s) 114, 762
BstFNI CGCG 1 cut(s) 654
BstH2I RGCGCY 2 cut(s) 255, 349
BstHHI GCGC 3 cut(s) 254, 348, 556
BstKTI GATC 1 cut(s) 766
BstMAI GTCTC 1 cut(s) 844
BstMBI GATC 1 cut(s) 763
BstMCI CGRYCG 1 cut(s) 630
BstNI CCWGG 5 cut(s) 230, 452, 578, 599, 697
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 7 cut(s) 228, 309, 450, 455, 576, 597, 695
BstSFI CTRYAG 3 cut(s) 175, 497, 719
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 7 cut(s) 60, 63, 189, 492, 495, 705, 805
BstZI CGGCCG 1 cut(s) 627
BsuRI GGCC 8 cut(s) 77, 407, 450, 455, 602, 629, 800, 852
BtgI CCRYGG 3 cut(s) 426, 512, 834
BtsCI GGATG 2 cut(s) 114, 762
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 712
Cac8I GCNNGC 5 cut(s) 405, 420, 497, 631, 798
CaiI CAGNNNCTG 3 cut(s) 475, 505, 718
CfoI GCGC 3 cut(s) 254, 348, 556
Cfr10I RCCGGY 6 cut(s) 86, 403, 418, 629, 674, 739
Cfr13I GGNCC 5 cut(s) 232, 313, 406, 454, 799
CseI GACGC 4 cut(s) 409, 481, 646, 808
CspAI ACCGGT 1 cut(s) 674
CviAII CATG 3 cut(s) 91, 604, 835
DdeI CTNAG 6 cut(s) 72, 264, 476, 582, 701, 747
DinI GGCGCC 1 cut(s) 253
DpnI GATC 1 cut(s) 765
DpnII GATC 1 cut(s) 763
EaeI YGGCCR 1 cut(s) 627
EagI CGGCCG 1 cut(s) 627
Eam1104I CTCTTC 3 cut(s) 455, 809, 892
EarI CTCTTC 3 cut(s) 455, 809, 892
EciI GGCGGA 2 cut(s) 175, 405
EclXI CGGCCG 1 cut(s) 627
Eco130I CCWWGG 1 cut(s) 834
Eco31I GGTCTC 1 cut(s) 844
Eco47I GGWCC 2 cut(s) 232, 313
Eco52I CGGCCG 1 cut(s) 627
Eco57I CTGAAG 2 cut(s) 831, 879
Eco88I CYCGRG 2 cut(s) 545, 767
EcoRII CCWGG 5 cut(s) 228, 450, 576, 597, 695
EcoT14I CCWWGG 1 cut(s) 834
EgeI GGCGCC 1 cut(s) 253
EheI GGCGCC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 834
FaeI CATG 3 cut(s) 94, 607, 838
FaiI YATR 3 cut(s) 92, 605, 836
FaqI GGGAC 1 cut(s) 259
FatI CATG 3 cut(s) 90, 603, 834
FokI GGATG 2 cut(s) 101, 769
FspBI CTAG 2 cut(s) 374, 873
GlaI GCGC 3 cut(s) 253, 347, 555
GsaI CCCAGC 1 cut(s) 139
GsuI CTGGAG 2 cut(s) 560, 581
HaeII RGCGCY 2 cut(s) 255, 349
HaeIII GGCC 8 cut(s) 77, 407, 450, 455, 602, 629, 800, 852
HgaI GACGC 4 cut(s) 409, 481, 646, 808
HhaI GCGC 3 cut(s) 254, 348, 556
Hin1I GRCGYC 4 cut(s) 252, 269, 401, 657
Hin1II CATG 3 cut(s) 94, 607, 838
Hin6I GCGC 3 cut(s) 252, 346, 554
HinP1I GCGC 3 cut(s) 252, 346, 554
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 2 cut(s) 623, 884
HphI GGTGA 3 cut(s) 76, 689, 742
Hpy166II GTNNAC 2 cut(s) 103, 733
Hpy188I TCNGA 4 cut(s) 267, 622, 750, 763
Hpy188III TCNNGA 3 cut(s) 41, 646, 769
Hpy8I GTNNAC 2 cut(s) 103, 733
Hpy99I CGWCG 4 cut(s) 274, 403, 617, 662
HpyAV CCTTC 1 cut(s) 91
HpyCH4IV ACGT 3 cut(s) 269, 439, 564
HpyCH4V TGCA 4 cut(s) 37, 177, 499, 721
HpyF3I CTNAG 6 cut(s) 72, 264, 476, 582, 701, 747
HpySE526I ACGT 3 cut(s) 269, 439, 564
Hsp92I GRCGYC 4 cut(s) 252, 269, 401, 657
Hsp92II CATG 3 cut(s) 94, 607, 838
HspAI GCGC 3 cut(s) 252, 346, 554
KasI GGCGCC 1 cut(s) 251
KroI GCCGGC 3 cut(s) 403, 418, 629
KroNI GCCGGC 3 cut(s) 405, 420, 631
Kzo9I GATC 1 cut(s) 763
LguI GCTCTTC 1 cut(s) 809
LmnI GCTCC 4 cut(s) 427, 638, 708, 790
Lsp1109I GCAGC 7 cut(s) 60, 63, 189, 492, 495, 705, 805
LweI GCATC 3 cut(s) 46, 477, 705
MaeI CTAG 2 cut(s) 374, 873
MaeII ACGT 3 cut(s) 269, 439, 564
MaeIII GTNAC 1 cut(s) 30
MalI GATC 1 cut(s) 765
MbiI CCGCTC 1 cut(s) 208
MboI GATC 1 cut(s) 763
MboII GAAGA 6 cut(s) 289, 472, 532, 535, 826, 879
MluCI AATT 1 cut(s) 910
Mly113I GGCGCC 1 cut(s) 252
MlyI GAGTC 2 cut(s) 617, 878
MmeI TCCRAC 1 cut(s) 645
MroNI GCCGGC 3 cut(s) 403, 418, 629
MseI TTAA 1 cut(s) 913
MslI CAYNNNNRTG 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 796
MspR9I CCNGG 7 cut(s) 230, 311, 452, 457, 578, 599, 697
MvaI CCWGG 5 cut(s) 230, 452, 578, 599, 697
MvnI CGCG 1 cut(s) 654
NaeI GCCGGC 3 cut(s) 405, 420, 631
NarI GGCGCC 1 cut(s) 252
NciI CCSGG 2 cut(s) 311, 457
NcoI CCATGG 1 cut(s) 834
NdeII GATC 1 cut(s) 763
NgoMIV GCCGGC 3 cut(s) 403, 418, 629
NlaIII CATG 3 cut(s) 94, 607, 838
NlaIV GGNNCC 8 cut(s) 253, 423, 435, 494, 572, 634, 673, 710
NmeAIII GCCGAG 1 cut(s) 605
NmuCI GTSAC 1 cut(s) 30
NspI RCATGY 1 cut(s) 94
PaeR7I CTCGAG 1 cut(s) 545
PaqCI CACCTGC 1 cut(s) 712
PciSI GCTCTTC 1 cut(s) 809
PcsI WCGNNNNNNNCGW 2 cut(s) 266, 618
PdiI GCCGGC 3 cut(s) 405, 420, 631
PflFI GACNNNGTC 1 cut(s) 271
PfoI TCCNGGA 1 cut(s) 309
PinAI ACCGGT 1 cut(s) 674
PleI GAGTC 2 cut(s) 617, 878
PluTI GGCGCC 1 cut(s) 255
PpsI GAGTC 2 cut(s) 617, 878
Ppu21I YACGTR 1 cut(s) 440
Psp6I CCWGG 5 cut(s) 228, 450, 576, 597, 695
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 5 cut(s) 228, 450, 576, 597, 695
PspN4I GGNNCC 8 cut(s) 253, 423, 435, 494, 572, 634, 673, 710
PspPI GGNCC 5 cut(s) 232, 313, 406, 454, 799
PspXI VCTCGAGB 1 cut(s) 545
PstI CTGCAG 3 cut(s) 179, 501, 723
PstNI CAGNNNCTG 3 cut(s) 475, 505, 718
PsyI GACNNNGTC 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 796
RseI CAYNNNNRTG 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 809
SaqAI TTAA 1 cut(s) 913
Sau3AI GATC 1 cut(s) 763
Sau96I GGNCC 5 cut(s) 232, 313, 406, 454, 799
SchI GAGTC 2 cut(s) 617, 878
ScrFI CCNGG 7 cut(s) 230, 311, 452, 457, 578, 599, 697
SfaNI GCATC 3 cut(s) 46, 477, 705
SfcI CTRYAG 3 cut(s) 175, 497, 719
SfoI GGCGCC 1 cut(s) 253
Sfr274I CTCGAG 1 cut(s) 545
SgrAI CRCCGGYG 2 cut(s) 674, 739
SinI GGWCC 2 cut(s) 232, 313
SlaI CTCGAG 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 1 cut(s) 910
SspDI GGCGCC 1 cut(s) 251
SspMI CTAG 2 cut(s) 374, 873
StyD4I CCNGG 7 cut(s) 228, 309, 450, 455, 576, 597, 695
StyI CCWWGG 1 cut(s) 834
TaiI ACGT 3 cut(s) 272, 442, 567
TaqI TCGA 4 cut(s) 282, 327, 360, 546
TasI AATT 1 cut(s) 910
Tru1I TTAA 1 cut(s) 913
Tru9I TTAA 1 cut(s) 913
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 7 cut(s) 48, 51, 177, 505, 508, 718, 793
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 868
TspRI CASTG 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 271
VpaK11BI GGWCC 2 cut(s) 232, 313
XceI RCATGY 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 545
XspI CTAG 2 cut(s) 374, 873
ZraI GACGTC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.