Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005417

Physical Location & Seq

Genomic Coordinates Forward (+)

21695390 .. 21695674

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG232200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCCCATCGTCGCCTCCGACTCTGCTGACTCCCTGCCCGTCCTGAAACGCAGCTTCTGCAGCACCGGTGATGTGGAGGTGCTGTCCAGGCTGAGCCGGAGCCAGTTGTTGAAGGTGGTGGGGAACTTGCCGGTGGTGCAGATGAGGATGTCGGATCTCGGTGGAGCAGCTGGATTTGCTGAACAAACAGAGCGTCATCAGGTCCATGGATCCCTCAGCTGCACCCAACGTCCGATCGGTGCAGAGGTTTTCTCGGTTTCCTCTGATCTGGAGACGTCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.03

Weight (kDa)

6.05

Isoelectric Point (pI)

58.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22100
fragaria_vesca	FvH4_1g29760 FvH4_6g43750
malus_domestica	MD17G1091100.v1.1
prunus_persica	Prupe.3G222500_v2.0.a1
pyrus_communis	pycom17g08800
rosa_chinensis	RchiOBHm_Chr2g0160481
rosa_laevigata	RLG00000000602 RLG00000006966 RLG00000012534 RLG00000020740 RLG00000021217 RLG00000035791
rosa_multiflora	Rmu_sc0002771.1_g000001 Rmu_ssc0000110.1_g000012
rosa_roxburghii	Rroxscaffold_2G00089790
rosa_rugosa	Rorug02G0234500 Rorug02G0483400 Rorug04G0068000
rosa_samantha	Rh2AG291900 Rh2AG548600 Rh2BG222400 Rh2BG562200 Rh2CG532900 Rh2DG571000 Rh7CG232200 Rh7CG308300 Rh7DG351600
rosa_wichuraiana	Rw2G045420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	278
AclWI	GGATC	3 cut(s)	162, 204, 217
AcyI	GRCGYC	1 cut(s)	275
AgeI	ACCGGT	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	3 cut(s)	54, 170, 219
AluI	AGCT	3 cut(s)	54, 170, 219
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	3 cut(s)	162, 204, 217
AlwNI	CAGNNNCTG	1 cut(s)	57
ApeKI	GCWGC	4 cut(s)	51, 60, 167, 219
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AsiGI	ACCGGT	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	202
BamHI	GGATCC	1 cut(s)	209
BbvCI	CCTCAGC	1 cut(s)	215
BbvI	GCAGC	4 cut(s)	63, 72, 179, 206
BccI	CCATC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	58
BisI	GCNGC	4 cut(s)	52, 61, 168, 220
BlpI	GCTNAGC	1 cut(s)	92
BlsI	GCNGC	4 cut(s)	53, 62, 169, 221
Bme1390I	CCNGG	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	2 cut(s)	101, 211
BmrFI	CCNGG	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
Bpu10I	CCTNAGC	1 cut(s)	215
Bpu1102I	GCTNAGC	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bse118I	RCCGGY	2 cut(s)	65, 130
Bse1I	ACTGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	83, 229
BseNI	ACTGG	1 cut(s)	103
BseXI	GCAGC	4 cut(s)	63, 72, 179, 206
BsgI	GTGCAG	3 cut(s)	158, 205, 261
Bsh1285I	CGRYCG	1 cut(s)	237
BshTI	ACCGGT	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	3 cut(s)	66, 97, 131
BsmAI	GTCTC	1 cut(s)	266
BsmBI	CGTCTC	1 cut(s)	266
Bsp143I	GATC	4 cut(s)	154, 209, 234, 265
Bsp1720I	GCTNAGC	1 cut(s)	92
Bsp19I	CCATGG	1 cut(s)	205
BspCNI	CTCAG	2 cut(s)	84, 228
BspLI	GGNNCC	2 cut(s)	101, 211
BspMAI	CTGCAG	1 cut(s)	62
BspPI	GGATC	3 cut(s)	162, 204, 217
BsrFI	RCCGGY	2 cut(s)	65, 130
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	2 cut(s)	65, 130
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	4 cut(s)	154, 209, 234, 265
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	92, 215
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	4 cut(s)	157, 212, 237, 268
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	4 cut(s)	154, 209, 234, 265
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 60, 88, 136, 176
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	58
BstV1I	GCAGC	4 cut(s)	63, 72, 179, 206
BstX2I	RGATCY	2 cut(s)	154, 209
BstYI	RGATCY	2 cut(s)	154, 209
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	57
Cfr10I	RCCGGY	2 cut(s)	65, 130
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	1 cut(s)	182
CspAI	ACCGGT	1 cut(s)	65
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	6 cut(s)	54, 91, 96, 102, 170, 219
CviKI_1	RGCY	6 cut(s)	54, 91, 96, 102, 170, 219
DdeI	CTNAG	2 cut(s)	92, 215
DpnI	GATC	4 cut(s)	156, 211, 236, 267
DpnII	GATC	4 cut(s)	154, 209, 234, 265
Eco130I	CCWWGG	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	266
FaeI	CATG	1 cut(s)	209
FaiI	YATR	1 cut(s)	207
FatI	CATG	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	52, 61, 168, 220
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	4 cut(s)	52, 61, 168, 220
GluI	GCNGC	4 cut(s)	52, 61, 168, 220
HapII	CCGG	3 cut(s)	66, 97, 131
HgaI	GACGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	209
HinfI	GANTC	2 cut(s)	20, 29
HpaII	CCGG	3 cut(s)	66, 97, 131
HphI	GGTGA	1 cut(s)	80
Hpy188I	TCNGA	4 cut(s)	19, 154, 234, 265
Hpy188III	TCNNGA	3 cut(s)	43, 269, 279
Hpy99I	CGWCG	2 cut(s)	14, 280
HpyAV	CCTTC	1 cut(s)	106
HpyCH4IV	ACGT	2 cut(s)	229, 275
HpyCH4V	TGCA	4 cut(s)	60, 139, 222, 242
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 60, 88, 136, 176
HpyF3I	CTNAG	2 cut(s)	92, 215
HpySE526I	ACGT	2 cut(s)	229, 275
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	209
Kzo9I	GATC	4 cut(s)	154, 209, 234, 265
LmnI	GCTCC	2 cut(s)	99, 164
Lsp1109I	GCAGC	4 cut(s)	63, 72, 179, 206
MaeII	ACGT	2 cut(s)	229, 275
MalI	GATC	4 cut(s)	156, 211, 236, 267
MboI	GATC	4 cut(s)	154, 209, 234, 265
MflI	RGATCY	2 cut(s)	154, 209
MlyI	GAGTC	2 cut(s)	14, 23
MmeI	TCCRAC	2 cut(s)	42, 132
MnlI	CCTC	6 cut(s)	25, 70, 138, 224, 238, 271
MspA1I	CMGCKG	2 cut(s)	170, 219
MspI	CCGG	3 cut(s)	66, 97, 131
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	5 cut(s)	57, 60, 88, 136, 176
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	4 cut(s)	154, 209, 234, 265
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	2 cut(s)	101, 211
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PinAI	ACCGGT	1 cut(s)	65
PkrI	GCNGC	4 cut(s)	53, 62, 169, 221
Ple19I	CGATCG	1 cut(s)	237
PleI	GAGTC	2 cut(s)	14, 23
PpsI	GAGTC	2 cut(s)	14, 23
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	101, 211
PspPI	GGNCC	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	62
PstNI	CAGNNNCTG	1 cut(s)	57
PsuI	RGATCY	2 cut(s)	154, 209
PvuI	CGATCG	1 cut(s)	237
PvuII	CAGCTG	2 cut(s)	170, 219
SatI	GCNGC	4 cut(s)	52, 61, 168, 220
Sau3AI	GATC	4 cut(s)	154, 209, 234, 265
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	14, 23
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	9 cut(s)	56, 81, 117, 172, 204, 221, 232, 249, 278
SfcI	CTRYAG	1 cut(s)	58
SgrAI	CRCCGGYG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	205
TaiI	ACGT	2 cut(s)	232, 278
TaqI	TCGA	1 cut(s)	278
TseI	GCWGC	4 cut(s)	51, 60, 167, 219
VpaK11BI	GGWCC	1 cut(s)	202
ZraI	GACGTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.