RchiOBHm_Chr2g0160481

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
76320188 .. 76321485
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52893

Sequence Viewer

Length: 912 bp
ATGGAGAAAACAGAGAAAGAGATCTTGATGTCACTGCATCAGGAGAGCAGCAGCAAGTCGCCGGAGGAAACTCAGGCCACCTTCACCGGCATGTTCCCCGTCAACCTCCATTCCATCCTCGCCGCCAACACCACCCAGCCCTTACTCCCTCTCTCCTTGTTCGCCGATAACTACTGCAGCCTCTCCGCTCCCAAAACCGAACCGCCGCTCTTTCACAACCACCACCAGGACCAGCCACCACAATACGGTGCCGTTTCGGCTCAGACGTCGTCCCTCATCGACTACTACTCCATCTTCAACCACCTCCCGGACCTCCTCTCCCTCGACCACTCTCCCTACAAGCGCCCTCGCCTCCTCGACCACCAAACCCTGGCCTCCTCCTACCAGCTCTACCCGACGCCGGCCGAATCTCCGCCGTCTCCCGTGGTGGTGCCACGTGGAAGCAGCCTGGCCCGGAAGAGGCGGCAGACGCTGAGCGACAAGATGCGGTGCCTGCAGAAGCTGCTGCCGTGGGAGAAGAAGATGGACAACGCCACCACGCTCGAGGCGGCGCACCGCTACGTCCGGTTCCTCCAGGCTCAGGTCGCCGCCCTCCAGGCCATGCCCATCGTCGCCTCCGACTCGGCCGGCTCCCTCCCGGTCCTGACACGCGGCGTCGGCGGCGGCAGCGGTGAGGTGGAGGTGCTGTCCACGCTGAGCCGGAGCCAGATGCTGCAAGTGGCGGTGAACTCGCCGGTGGCGCAGATGAGGATGTCGGATCTCGGGAGGTGTGTGTTCTCGGTGGAGCAGCTGGCTCTGCTGAACAAGAAGAGCGTCATCAGGTCTGCCATGGTCTCTGCTTCAGGCCATTACTATCCTACTACTACTACTAGCTTCATTGACTCTTCTGCTTCTGCCTCTACCACTAATTAA

Protein Analysis

303

Amino Acids

33.16

Weight (kDa)

8.37

Isoelectric Point (pI)

62.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 151 - 192 5.6e-06 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 269
AccB1I GGYRCC 3 cut(s) 248, 430, 489
AccB7I CCANNNNNTGG 1 cut(s) 370
AccBSI CCGCTC 2 cut(s) 188, 208
AccII CGCG 1 cut(s) 651
AclWI GGATC 1 cut(s) 765
AcoI YGGCCR 2 cut(s) 402, 624
AcuI CTGAAG 1 cut(s) 825
AcvI CACGTG 1 cut(s) 437
AcyI GRCGYC 3 cut(s) 266, 398, 654
AfiI CCNNNNNNNGG 7 cut(s) 226, 245, 307, 370, 400, 459, 580
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 5 cut(s) 225, 369, 447, 573, 594
AluBI AGCT 4 cut(s) 388, 502, 790, 873
AluI AGCT 4 cut(s) 388, 502, 790, 873
Alw26I GTCTC 2 cut(s) 423, 838
AlwI GGATC 1 cut(s) 765
AlwNI CAGNNNCTG 3 cut(s) 472, 502, 712
Ama87I CYCGRG 2 cut(s) 542, 761
AoxI GGCC 7 cut(s) 75, 372, 402, 450, 597, 624, 844
ApeKI GCWGC 9 cut(s) 48, 51, 177, 444, 502, 505, 666, 712, 787
AspLEI GCGC 3 cut(s) 345, 553, 742
AspS9I GGNCC 4 cut(s) 229, 310, 451, 640
AsuC2I CCSGG 3 cut(s) 308, 454, 638
AsuHPI GGTGA 3 cut(s) 76, 683, 736
AvaI CYCGRG 2 cut(s) 542, 761
AvaII GGWCC 3 cut(s) 229, 310, 640
BanI GGYRCC 3 cut(s) 248, 430, 489
BbrPI CACGTG 1 cut(s) 437
BbvI GCAGC 9 cut(s) 60, 63, 189, 456, 489, 492, 678, 699, 799
BccI CCATC 4 cut(s) 122, 299, 517, 614
BceAI ACGGC 3 cut(s) 236, 400, 493
BciT130I CCWGG 5 cut(s) 227, 371, 449, 575, 596
BcnI CCSGG 3 cut(s) 308, 454, 638
BcoDI GTCTC 2 cut(s) 423, 838
BfaI CTAG 1 cut(s) 870
BfmI CTRYAG 2 cut(s) 175, 494
BfoI RGCGCY 1 cut(s) 346
BglI GCCNNNNNGGC 2 cut(s) 257, 596
BglII AGATCT 1 cut(s) 21
BlpI GCTNAGC 2 cut(s) 473, 695
Bme1390I CCNGG 8 cut(s) 227, 308, 371, 449, 454, 575, 596, 638
Bme18I GGWCC 3 cut(s) 229, 310, 640
BmeT110I CYCGRG 2 cut(s) 542, 761
BmgT120I GGNCC 4 cut(s) 229, 310, 451, 640
BmiI GGNNCC 6 cut(s) 250, 432, 491, 569, 631, 704
BmrFI CCNGG 8 cut(s) 227, 308, 371, 449, 454, 575, 596, 638
BmsI GCATC 3 cut(s) 46, 474, 699
BpmI CTGGAG 2 cut(s) 557, 578
Bpu10I CCTNAGC 1 cut(s) 579
Bpu1102I GCTNAGC 2 cut(s) 473, 695
BpuMI CCSGG 3 cut(s) 308, 454, 638
BsaAI YACGTR 1 cut(s) 437
BsaHI GRCGYC 3 cut(s) 266, 398, 654
BsaI GGTCTC 1 cut(s) 838
BsaJI CCNNGG 4 cut(s) 369, 423, 509, 828
BsaWI WCCGGW 1 cut(s) 564
BsaXI ACNNNNNCTCC 6 cut(s) 272, 302, 302, 332, 671, 701
Bsc4I CCNNNNNNNGG 7 cut(s) 226, 245, 307, 370, 400, 459, 580
Bse118I RCCGGY 4 cut(s) 86, 400, 626, 733
BseBI CCWGG 5 cut(s) 227, 371, 449, 575, 596
BseDI CCNNGG 4 cut(s) 369, 423, 509, 828
BseGI GGATG 2 cut(s) 114, 756
BseLI CCNNNNNNNGG 7 cut(s) 226, 245, 307, 370, 400, 459, 580
BseMII CTCAG 5 cut(s) 86, 275, 464, 593, 686
BseRI GAGGAG 3 cut(s) 305, 344, 367
BseX3I CGGCCG 2 cut(s) 402, 624
BseXI GCAGC 9 cut(s) 60, 63, 189, 456, 489, 492, 678, 699, 799
BseYI CCCAGC 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 651
Bsh1285I CGRYCG 2 cut(s) 405, 627
BshFI GGCC 7 cut(s) 77, 374, 404, 452, 599, 626, 846
BshNI GGYRCC 3 cut(s) 248, 430, 489
BsiEI CGRYCG 2 cut(s) 405, 627
BsiHKCI CYCGRG 2 cut(s) 542, 761
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 7 cut(s) 226, 245, 307, 370, 400, 459, 580
BsmAI GTCTC 2 cut(s) 423, 838
BsmBI CGTCTC 1 cut(s) 423
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 7 cut(s) 77, 374, 404, 452, 599, 626, 846
Bso31I GGTCTC 1 cut(s) 838
BsoBI CYCGRG 2 cut(s) 542, 761
Bsp143I GATC 2 cut(s) 21, 757
Bsp1720I GCTNAGC 2 cut(s) 473, 695
Bsp19I CCATGG 1 cut(s) 828
BspANI GGCC 7 cut(s) 77, 374, 404, 452, 599, 626, 846
BspCNI CTCAG 5 cut(s) 85, 274, 465, 592, 687
BspFNI CGCG 1 cut(s) 651
BspLI GGNNCC 6 cut(s) 250, 432, 491, 569, 631, 704
BspMAI CTGCAG 2 cut(s) 179, 498
BspPI GGATC 1 cut(s) 765
BspQI GCTCTTC 1 cut(s) 803
BspT107I GGYRCC 3 cut(s) 248, 430, 489
BspTNI GGTCTC 1 cut(s) 838
BsrBI CCGCTC 2 cut(s) 188, 208
BsrFI RCCGGY 4 cut(s) 86, 400, 626, 733
BssAI RCCGGY 4 cut(s) 86, 400, 626, 733
BssECI CCNNGG 4 cut(s) 369, 423, 509, 828
BssMI GATC 2 cut(s) 21, 757
BssNI GRCGYC 3 cut(s) 266, 398, 654
BssT1I CCWWGG 1 cut(s) 828
Bst2UI CCWGG 5 cut(s) 227, 371, 449, 575, 596
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 3 cut(s) 452, 803, 889
BstACI GRCGYC 3 cut(s) 266, 398, 654
BstAPI GCANNNNNTGC 1 cut(s) 502
BstBAI YACGTR 1 cut(s) 437
BstC8I GCNNGC 4 cut(s) 402, 494, 628, 792
BstDEI CTNAG 5 cut(s) 72, 261, 473, 579, 695
BstDSI CCRYGG 3 cut(s) 423, 509, 828
BstF5I GGATG 2 cut(s) 114, 756
BstFNI CGCG 1 cut(s) 651
BstH2I RGCGCY 1 cut(s) 346
BstHHI GCGC 3 cut(s) 345, 553, 742
BstKTI GATC 2 cut(s) 24, 760
BstMAI GTCTC 2 cut(s) 423, 838
BstMBI GATC 2 cut(s) 21, 757
BstMCI CGRYCG 2 cut(s) 405, 627
BstNI CCWGG 5 cut(s) 227, 371, 449, 575, 596
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 8 cut(s) 225, 306, 369, 447, 452, 573, 594, 636
BstSFI CTRYAG 2 cut(s) 175, 494
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 9 cut(s) 60, 63, 189, 456, 489, 492, 678, 699, 799
BstX2I RGATCY 2 cut(s) 21, 757
BstYI RGATCY 2 cut(s) 21, 757
BstZI CGGCCG 2 cut(s) 402, 624
BsuRI GGCC 7 cut(s) 77, 374, 404, 452, 599, 626, 846
BtgI CCRYGG 3 cut(s) 423, 509, 828
BtsCI GGATG 2 cut(s) 114, 756
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 4 cut(s) 402, 494, 628, 792
CaiI CAGNNNCTG 3 cut(s) 472, 502, 712
CfoI GCGC 3 cut(s) 345, 553, 742
Cfr10I RCCGGY 4 cut(s) 86, 400, 626, 733
Cfr13I GGNCC 4 cut(s) 229, 310, 451, 640
CseI GACGC 4 cut(s) 406, 478, 643, 802
CviAII CATG 3 cut(s) 91, 601, 829
DdeI CTNAG 5 cut(s) 72, 261, 473, 579, 695
DpnI GATC 2 cut(s) 23, 759
DpnII GATC 2 cut(s) 21, 757
EaeI YGGCCR 2 cut(s) 402, 624
EagI CGGCCG 2 cut(s) 402, 624
Eam1104I CTCTTC 3 cut(s) 452, 803, 889
EarI CTCTTC 3 cut(s) 452, 803, 889
EciI GGCGGA 1 cut(s) 402
EclXI CGGCCG 2 cut(s) 402, 624
Eco130I CCWWGG 1 cut(s) 828
Eco31I GGTCTC 1 cut(s) 838
Eco47I GGWCC 3 cut(s) 229, 310, 640
Eco52I CGGCCG 2 cut(s) 402, 624
Eco57I CTGAAG 1 cut(s) 825
Eco72I CACGTG 1 cut(s) 437
Eco88I CYCGRG 2 cut(s) 542, 761
EcoRII CCWGG 5 cut(s) 225, 369, 447, 573, 594
EcoT14I CCWWGG 1 cut(s) 828
ErhI CCWWGG 1 cut(s) 828
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 3 cut(s) 94, 604, 832
FaiI YATR 3 cut(s) 92, 602, 830
FaqI GGGAC 1 cut(s) 256
FatI CATG 3 cut(s) 90, 600, 828
FokI GGATG 2 cut(s) 101, 763
FspBI CTAG 1 cut(s) 870
GlaI GCGC 3 cut(s) 344, 552, 741
GsaI CCCAGC 1 cut(s) 139
GsuI CTGGAG 2 cut(s) 557, 578
HaeII RGCGCY 1 cut(s) 346
HaeIII GGCC 7 cut(s) 77, 374, 404, 452, 599, 626, 846
HgaI GACGC 4 cut(s) 406, 478, 643, 802
HhaI GCGC 3 cut(s) 345, 553, 742
Hin1I GRCGYC 3 cut(s) 266, 398, 654
Hin1II CATG 3 cut(s) 94, 604, 832
Hin6I GCGC 3 cut(s) 343, 551, 740
HinP1I GCGC 3 cut(s) 343, 551, 740
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 3 cut(s) 407, 620, 881
HphI GGTGA 3 cut(s) 76, 683, 736
Hpy166II GTNNAC 3 cut(s) 103, 690, 727
Hpy188I TCNGA 3 cut(s) 264, 619, 757
Hpy188III TCNNGA 4 cut(s) 25, 41, 643, 763
Hpy8I GTNNAC 3 cut(s) 103, 690, 727
Hpy99I CGWCG 4 cut(s) 271, 400, 614, 659
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 3 cut(s) 266, 436, 561
HpyCH4V TGCA 4 cut(s) 37, 177, 496, 715
HpyF3I CTNAG 5 cut(s) 72, 261, 473, 579, 695
HpySE526I ACGT 3 cut(s) 266, 436, 561
Hsp92I GRCGYC 3 cut(s) 266, 398, 654
Hsp92II CATG 3 cut(s) 94, 604, 832
HspAI GCGC 3 cut(s) 343, 551, 740
KroI GCCGGC 2 cut(s) 400, 626
KroNI GCCGGC 2 cut(s) 402, 628
Kzo9I GATC 2 cut(s) 21, 757
LguI GCTCTTC 1 cut(s) 803
LmnI GCTCC 4 cut(s) 193, 635, 702, 784
Lsp1109I GCAGC 9 cut(s) 60, 63, 189, 456, 489, 492, 678, 699, 799
LweI GCATC 3 cut(s) 46, 474, 699
MaeI CTAG 1 cut(s) 870
MaeII ACGT 3 cut(s) 266, 436, 561
MaeIII GTNAC 1 cut(s) 30
MalI GATC 2 cut(s) 23, 759
MbiI CCGCTC 2 cut(s) 188, 208
MboI GATC 2 cut(s) 21, 757
MboII GAAGA 6 cut(s) 286, 469, 529, 532, 820, 876
MflI RGATCY 2 cut(s) 21, 757
MluCI AATT 1 cut(s) 907
MlyI GAGTC 2 cut(s) 614, 875
MmeI TCCRAC 2 cut(s) 642, 735
MroNI GCCGGC 2 cut(s) 400, 626
MseI TTAA 1 cut(s) 910
MslI CAYNNNNRTG 1 cut(s) 89
MspA1I CMGCKG 2 cut(s) 669, 790
MspR9I CCNGG 8 cut(s) 227, 308, 371, 449, 454, 575, 596, 638
MvaI CCWGG 5 cut(s) 227, 371, 449, 575, 596
MvnI CGCG 1 cut(s) 651
NaeI GCCGGC 2 cut(s) 402, 628
NciI CCSGG 3 cut(s) 308, 454, 638
NcoI CCATGG 1 cut(s) 828
NdeII GATC 2 cut(s) 21, 757
NgoMIV GCCGGC 2 cut(s) 400, 626
NlaIII CATG 3 cut(s) 94, 604, 832
NlaIV GGNNCC 6 cut(s) 250, 432, 491, 569, 631, 704
NmeAIII GCCGAG 1 cut(s) 602
NmuCI GTSAC 1 cut(s) 30
NspI RCATGY 1 cut(s) 94
PaeR7I CTCGAG 1 cut(s) 542
PciSI GCTCTTC 1 cut(s) 803
PcsI WCGNNNNNNNCGW 2 cut(s) 263, 615
PdiI GCCGGC 2 cut(s) 402, 628
PfeI GAWTC 1 cut(s) 407
PflFI GACNNNGTC 1 cut(s) 268
PflMI CCANNNNNTGG 1 cut(s) 370
PfoI TCCNGGA 1 cut(s) 306
PleI GAGTC 2 cut(s) 614, 875
PmaCI CACGTG 1 cut(s) 437
PmlI CACGTG 1 cut(s) 437
PpsI GAGTC 2 cut(s) 614, 875
Ppu21I YACGTR 1 cut(s) 437
Psp6I CCWGG 5 cut(s) 225, 369, 447, 573, 594
PspCI CACGTG 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 5 cut(s) 225, 369, 447, 573, 594
PspN4I GGNNCC 6 cut(s) 250, 432, 491, 569, 631, 704
PspPI GGNCC 4 cut(s) 229, 310, 451, 640
PspXI VCTCGAGB 1 cut(s) 542
PstI CTGCAG 2 cut(s) 179, 498
PstNI CAGNNNCTG 3 cut(s) 472, 502, 712
PsuI RGATCY 2 cut(s) 21, 757
PsyI GACNNNGTC 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 790
RseI CAYNNNNRTG 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 803
SaqAI TTAA 1 cut(s) 910
Sau3AI GATC 2 cut(s) 21, 757
Sau96I GGNCC 4 cut(s) 229, 310, 451, 640
SchI GAGTC 2 cut(s) 614, 875
ScrFI CCNGG 8 cut(s) 227, 308, 371, 449, 454, 575, 596, 638
SfaNI GCATC 3 cut(s) 46, 474, 699
SfcI CTRYAG 2 cut(s) 175, 494
Sfr274I CTCGAG 1 cut(s) 542
SgrAI CRCCGGYG 1 cut(s) 733
SinI GGWCC 3 cut(s) 229, 310, 640
SlaI CTCGAG 1 cut(s) 542
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 1 cut(s) 907
SspMI CTAG 1 cut(s) 870
StyD4I CCNGG 8 cut(s) 225, 306, 369, 447, 452, 573, 594, 636
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 3 cut(s) 269, 439, 564
TaqI TCGA 4 cut(s) 279, 324, 357, 543
TasI AATT 1 cut(s) 907
TauI GCSGC 8 cut(s) 125, 208, 466, 551, 590, 654, 663, 666
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 910
Tru9I TTAA 1 cut(s) 910
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 9 cut(s) 48, 51, 177, 444, 502, 505, 666, 712, 787
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 865
TspRI CASTG 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 370
VpaK11BI GGWCC 3 cut(s) 229, 310, 640
XceI RCATGY 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 542
XspI CTAG 1 cut(s) 870
ZraI GACGTC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.