Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005417

Physical Location & Seq

Genomic Coordinates Forward (+)

7594483 .. 7595715

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1091100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGATGAGACTGAGACAGAGCTGCGGAGGGCAATTCGGTCATTGTCGGGCAGAGCTGACGGAGGTGGAGAGAAGGCCACTGCTTGTGTCACTACTGGTTGGGATGAGGAGGAGGCCACCTTCAACGCCATCATGTCCTCCGGTATCACCTTCCAGTCCTTCCTCCCCACCACCACCTCCGCCCCTCACCACCTCCAAAGCCCAATGCTGCCGTCACCCCCGTCTCTGAAACCCCTACCCTACTCCGATTTCGCTCAAGACACATTCACCAATGTTAGCCCCGCCACCGCCGCCGCCTTGGACTACTCCCAAGTCCTGAGGTTGGCTAAACACGAACCAATTTCCAACTACCAAGACTACTTCCCAACCCCAACATTTTACGATTACCCACCTGATCTCAACTTGCTGCCCACCACCCATTTCTCTCCTCCTCCGCCGCGTCATCTCCAGCACCACGACAATGAATCCAACGACTACTCCTCCATCTTCCAGCACTTGCCAGATCTCCTTCCTCTCGACCCATCTAACTATTTCCCATGTTCTTCATCTTCCTCATCACCCTACAAACGCCCCCGATTCGTCGGCTCTCATCACTTCTGCTACCCGTCAGCTTCTTTCGCCGCCGCCGTCGCCACCCAACATTTCCATCCTCATCCTCCTCTACCCCATTTCAACAACGCCCCTCTGTTCCCACCTCTTAACAACTATGGCTTCCGAACCTCCTCTGCTTCTCAATCTTCATCACACGCCAACGCTCCTACTCCCCCTCCTCCTCCGGCGCCGCAGGTTAAAACTAAGAGAAGGATTACAACCCCATCCCCGTCCCTACCCGGCAGTGCTCTCGCTCGCGAGCGGAGGCAGAGGCTGAGCGACAAGACTCGCTGCCTGCAGAAGCTCCTACCCTGGGACAAGAAAATGGACTCCGCCACCACTTACGGAGAGGCCTACAAGTACATCCAGTTCCTCCAGGCTCAGCTCTCCGCGCTCCAAACCATGCCCGTCCTTACTCCGCCCACCACTTCCTTTGCTACCAGTAGCGTCGGCGGCAAGCTGGAGAGGCTGAGCCGCAACCAGCTTCTGCAGGTTCTGCTCAACTCCCCTTCTGCTCAGACCGTCATGTACTCCCGCGGCTGCTGTGTGTTTTCGGTGGAGCAGTTGGATCAAATCAGCCGCCGATTCAGCCACAAAATGGGGTCCTCCACCGCCTCCAAATCATCTCCACCGTCCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

411

Amino Acids

45.2

Weight (kDa)

8.8

Isoelectric Point (pI)

73.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22100
fragaria_vesca	FvH4_1g29760 FvH4_6g43750
malus_domestica	MD17G1091100.v1.1
prunus_persica	Prupe.3G222500_v2.0.a1
pyrus_communis	pycom17g08800
rosa_chinensis	RchiOBHm_Chr2g0160481
rosa_laevigata	RLG00000000602 RLG00000006966 RLG00000012534 RLG00000020740 RLG00000021217 RLG00000035791
rosa_multiflora	Rmu_sc0002771.1_g000001 Rmu_ssc0000110.1_g000012
rosa_roxburghii	Rroxscaffold_2G00089790
rosa_rugosa	Rorug02G0234500 Rorug02G0483400 Rorug04G0068000
rosa_samantha	Rh2AG291900 Rh2AG548600 Rh2BG222400 Rh2BG562200 Rh2CG532900 Rh2DG571000 Rh7CG232200 Rh7CG308300 Rh7DG351600
rosa_wichuraiana	Rw2G045420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	775, 1072
AccB1I	GGYRCC	1 cut(s)	778
AccB7I	CCANNNNNTGG	1 cut(s)	1189
AccBSI	CCGCTC	1 cut(s)	853
AccII	CGCG	4 cut(s)	439, 849, 983, 1128
AclWI	GGATC	1 cut(s)	1167
AcyI	GRCGYC	1 cut(s)	779
AfaI	GTAC	2 cut(s)	953, 1121
AfiI	CCNNNNNNNGG	3 cut(s)	322, 904, 1189
AgsI	TTSAA	2 cut(s)	124, 673
AjnI	CCWGG	2 cut(s)	902, 966
AluBI	AGCT	7 cut(s)	22, 56, 611, 895, 976, 1051, 1075
AluI	AGCT	7 cut(s)	22, 56, 611, 895, 976, 1051, 1075
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	3 cut(s)	2, 8, 228
AlwI	GGATC	1 cut(s)	1167
AlwNI	CAGNNNCTG	3 cut(s)	865, 1078, 1087
AoxI	GGCC	3 cut(s)	75, 114, 942
ApeKI	GCWGC	5 cut(s)	22, 208, 406, 882, 1131
AspLEI	GCGC	2 cut(s)	781, 985
AspS9I	GGNCC	1 cut(s)	1194
AsuC2I	CCSGG	1 cut(s)	831
AsuHPI	GGTGA	5 cut(s)	139, 179, 207, 259, 549
AvaII	GGWCC	1 cut(s)	1194
AxyI	CCTNAGG	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	778
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	5 cut(s)	9, 195, 393, 869, 1118
BccI	CCATC	5 cut(s)	137, 491, 529, 654, 823
BceAI	ACGGC	2 cut(s)	196, 611
BcgI	CGANNNNNNTGC	2 cut(s)	823, 857
BciT130I	CCWGG	2 cut(s)	904, 968
BcnI	CCSGG	1 cut(s)	831
BcoDI	GTCTC	3 cut(s)	2, 8, 228
BfmI	CTRYAG	2 cut(s)	887, 1079
BfoI	RGCGCY	1 cut(s)	782
BfuAI	ACCTGC	2 cut(s)	775, 1072
BglII	AGATCT	1 cut(s)	502
BlpI	GCTNAGC	3 cut(s)	866, 972, 1061
Bme1390I	CCNGG	3 cut(s)	831, 904, 968
Bme18I	GGWCC	1 cut(s)	1194
BmgT120I	GGNCC	1 cut(s)	1194
BmiI	GGNNCC	2 cut(s)	780, 1195
BmrFI	CCNGG	3 cut(s)	831, 904, 968
BpmI	CTGGAG	3 cut(s)	431, 950, 1073
Bpu1102I	GCTNAGC	3 cut(s)	866, 972, 1061
BpuEI	CTTGAG	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	831
BsaHI	GRCGYC	1 cut(s)	779
BsaJI	CCNNGG	4 cut(s)	297, 902, 903, 1126
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	6 cut(s)	461, 464, 491, 494, 751, 781
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 904, 1189
Bse1I	ACTGG	4 cut(s)	100, 154, 958, 1032
Bse21I	CCTNAGG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	904, 968
BseDI	CCNNGG	4 cut(s)	297, 902, 903, 1126
BseGI	GGATG	6 cut(s)	10, 109, 646, 652, 815, 954
BseLI	CCNNNNNNNGG	3 cut(s)	322, 904, 1189
BseMII	CTCAG	5 cut(s)	308, 857, 986, 1052, 1121
BseNI	ACTGG	4 cut(s)	100, 154, 958, 1032
BseRI	GAGGAG	9 cut(s)	122, 125, 417, 420, 469, 648, 712, 759, 762
BseXI	GCAGC	5 cut(s)	9, 195, 393, 869, 1118
Bsh1236I	CGCG	4 cut(s)	439, 849, 983, 1128
BshFI	GGCC	3 cut(s)	77, 116, 944
BshNI	GGYRCC	1 cut(s)	778
BsiHKAI	GWGCWC	1 cut(s)	841
BsiSI	CCGG	3 cut(s)	141, 776, 831
BslFI	GGGAC	3 cut(s)	808, 920, 1210
BslI	CCNNNNNNNGG	3 cut(s)	322, 904, 1189
BsmAI	GTCTC	3 cut(s)	2, 8, 228
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	3 cut(s)	808, 920, 1210
BsnI	GGCC	3 cut(s)	77, 116, 944
Bsp1286I	GDGCHC	1 cut(s)	841
Bsp143I	GATC	3 cut(s)	394, 502, 1159
Bsp1720I	GCTNAGC	3 cut(s)	866, 972, 1061
Bsp68I	TCGCGA	1 cut(s)	849
BspANI	GGCC	3 cut(s)	77, 116, 944
BspCNI	CTCAG	6 cut(s)	4, 309, 858, 985, 1053, 1120
BspFNI	CGCG	4 cut(s)	439, 849, 983, 1128
BspLI	GGNNCC	2 cut(s)	780, 1195
BspMAI	CTGCAG	2 cut(s)	891, 1083
BspMI	ACCTGC	2 cut(s)	775, 1072
BspPI	GGATC	1 cut(s)	1167
BspT107I	GGYRCC	1 cut(s)	778
BsrBI	CCGCTC	1 cut(s)	853
BsrI	ACTGG	4 cut(s)	100, 154, 958, 1032
BssECI	CCNNGG	4 cut(s)	297, 902, 903, 1126
BssMI	GATC	3 cut(s)	394, 502, 1159
BssNI	GRCGYC	1 cut(s)	779
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	904, 968
Bst4CI	ACNGT	2 cut(s)	1114, 1224
BstACI	GRCGYC	1 cut(s)	779
BstAPI	GCANNNNNTGC	1 cut(s)	1087
BstC8I	GCNNGC	4 cut(s)	847, 851, 887, 1049
BstDEI	CTNAG	7 cut(s)	12, 317, 795, 866, 972, 1061, 1107
BstDSI	CCRYGG	1 cut(s)	1126
BstF5I	GGATG	6 cut(s)	10, 109, 646, 652, 815, 954
BstFNI	CGCG	4 cut(s)	439, 849, 983, 1128
BstH2I	RGCGCY	1 cut(s)	782
BstHHI	GCGC	2 cut(s)	781, 985
BstKTI	GATC	3 cut(s)	397, 505, 1162
BstMAI	GTCTC	3 cut(s)	2, 8, 228
BstMBI	GATC	3 cut(s)	394, 502, 1159
BstMWI	GCNNNNNNNGC	8 cut(s)	290, 617, 629, 982, 1044, 1057, 1087, 1179
BstNI	CCWGG	2 cut(s)	904, 968
BstSCI	CCNGG	3 cut(s)	829, 902, 966
BstSFI	CTRYAG	2 cut(s)	887, 1079
BstUI	CGCG	4 cut(s)	439, 849, 983, 1128
BstV1I	GCAGC	5 cut(s)	9, 195, 393, 869, 1118
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
Bsu36I	CCTNAGG	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	77, 116, 944
BtgI	CCRYGG	1 cut(s)	1126
BtsCI	GGATG	6 cut(s)	10, 109, 646, 652, 815, 954
BtsI	GCAGTG	2 cut(s)	78, 841
BtsIMutI	CAGTG	2 cut(s)	78, 841
BtuMI	TCGCGA	1 cut(s)	849
BveI	ACCTGC	2 cut(s)	775, 1072
Cac8I	GCNNGC	4 cut(s)	847, 851, 887, 1049
CaiI	CAGNNNCTG	3 cut(s)	865, 1078, 1087
CfoI	GCGC	2 cut(s)	781, 985
Cfr13I	GGNCC	1 cut(s)	1194
Cfr42I	CCGCGG	1 cut(s)	1129
CseI	GACGC	2 cut(s)	428, 1027
Csp6I	GTAC	2 cut(s)	952, 1120
CspCI	CAANNNNNGTGG	2 cut(s)	1006, 1041
CviAII	CATG	4 cut(s)	133, 537, 994, 1117
CviQI	GTAC	2 cut(s)	952, 1120
DdeI	CTNAG	7 cut(s)	12, 317, 795, 866, 972, 1061, 1107
DinI	GGCGCC	1 cut(s)	780
DpnI	GATC	3 cut(s)	396, 504, 1161
DpnII	GATC	3 cut(s)	394, 502, 1159
EciI	GGCGGA	4 cut(s)	169, 423, 913, 999
Eco130I	CCWWGG	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	944
Eco47I	GGWCC	1 cut(s)	1194
Eco81I	CCTNAGG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	1194
EcoRII	CCWGG	2 cut(s)	902, 966
EcoT14I	CCWWGG	1 cut(s)	297
EgeI	GGCGCC	1 cut(s)	780
EheI	GGCGCC	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	4 cut(s)	136, 540, 997, 1120
FaiI	YATR	6 cut(s)	134, 538, 708, 995, 1118, 1231
FaqI	GGGAC	3 cut(s)	808, 920, 1210
FatI	CATG	4 cut(s)	132, 536, 993, 1116
FauI	CCCGC	2 cut(s)	289, 1133
FokI	GGATG	6 cut(s)	17, 116, 633, 639, 802, 941
GlaI	GCGC	2 cut(s)	780, 984
GsuI	CTGGAG	3 cut(s)	431, 950, 1073
HaeII	RGCGCY	1 cut(s)	782
HaeIII	GGCC	3 cut(s)	77, 116, 944
HapII	CCGG	3 cut(s)	141, 776, 831
HgaI	GACGC	2 cut(s)	428, 1027
HhaI	GCGC	2 cut(s)	781, 985
Hin1I	GRCGYC	1 cut(s)	779
Hin1II	CATG	4 cut(s)	136, 540, 997, 1120
Hin6I	GCGC	2 cut(s)	779, 983
HinP1I	GCGC	2 cut(s)	779, 983
HinfI	GANTC	5 cut(s)	464, 576, 877, 920, 1176
HpaII	CCGG	3 cut(s)	141, 776, 831
HphI	GGTGA	5 cut(s)	139, 179, 207, 259, 549
Hpy188I	TCNGA	4 cut(s)	228, 247, 716, 1110
Hpy188III	TCNNGA	4 cut(s)	257, 316, 515, 848
Hpy99I	CGWCG	3 cut(s)	584, 632, 1043
HpyAV	CCTTC	7 cut(s)	67, 130, 160, 169, 518, 795, 1110
HpyCH4III	ACNGT	2 cut(s)	1114, 1224
HpyCH4V	TGCA	2 cut(s)	889, 1081
HpyF10VI	GCNNNNNNNGC	8 cut(s)	290, 617, 629, 982, 1044, 1057, 1087, 1179
HpyF3I	CTNAG	7 cut(s)	12, 317, 795, 866, 972, 1061, 1107
Hsp92I	GRCGYC	1 cut(s)	779
Hsp92II	CATG	4 cut(s)	136, 540, 997, 1120
HspAI	GCGC	2 cut(s)	779, 983
KasI	GGCGCC	1 cut(s)	778
KspI	CCGCGG	1 cut(s)	1129
Kzo9I	GATC	3 cut(s)	394, 502, 1159
LmnI	GCTCC	4 cut(s)	760, 900, 990, 1150
Lsp1109I	GCAGC	5 cut(s)	9, 195, 393, 869, 1118
MaeIII	GTNAC	2 cut(s)	88, 213
MalI	GATC	3 cut(s)	396, 504, 1161
MbiI	CCGCTC	1 cut(s)	853
MboI	GATC	3 cut(s)	394, 502, 1159
MboII	GAAGA	4 cut(s)	478, 534, 540, 729
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	841
MluCI	AATT	2 cut(s)	33, 339
Mly113I	GGCGCC	1 cut(s)	779
MlyI	GAGTC	2 cut(s)	871, 914
MmeI	TCCRAC	3 cut(s)	369, 492, 1137
MseI	TTAA	2 cut(s)	699, 789
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	1128
MspI	CCGG	3 cut(s)	141, 776, 831
MspR9I	CCNGG	3 cut(s)	831, 904, 968
MvaI	CCWGG	2 cut(s)	904, 968
MvnI	CGCG	4 cut(s)	439, 849, 983, 1128
MwoI	GCNNNNNNNGC	8 cut(s)	290, 617, 629, 982, 1044, 1057, 1087, 1179
NarI	GGCGCC	1 cut(s)	779
NciI	CCSGG	1 cut(s)	831
NdeII	GATC	3 cut(s)	394, 502, 1159
NlaIII	CATG	4 cut(s)	136, 540, 997, 1120
NlaIV	GGNNCC	2 cut(s)	780, 1195
NmuCI	GTSAC	2 cut(s)	88, 213
NruI	TCGCGA	1 cut(s)	849
PasI	CCCWGGG	1 cut(s)	903
PceI	AGGCCT	1 cut(s)	944
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PfeI	GAWTC	3 cut(s)	464, 576, 1176
PflMI	CCANNNNNTGG	1 cut(s)	1189
PleI	GAGTC	2 cut(s)	871, 914
PluTI	GGCGCC	1 cut(s)	782
PpsI	GAGTC	2 cut(s)	871, 914
PpuMI	RGGWCCY	1 cut(s)	1194
Psp5II	RGGWCCY	1 cut(s)	1194
Psp6I	CCWGG	2 cut(s)	902, 966
PspGI	CCWGG	2 cut(s)	902, 966
PspN4I	GGNNCC	2 cut(s)	780, 1195
PspPI	GGNCC	1 cut(s)	1194
PspPPI	RGGWCCY	1 cut(s)	1194
PsrI	GAACNNNNNNTAC	2 cut(s)	944, 976
PstI	CTGCAG	2 cut(s)	891, 1083
PstNI	CAGNNNCTG	3 cut(s)	865, 1078, 1087
PsuI	RGATCY	1 cut(s)	502
RruI	TCGCGA	1 cut(s)	849
RsaI	GTAC	2 cut(s)	953, 1121
RsaNI	GTAC	2 cut(s)	952, 1120
RseI	CAYNNNNRTG	1 cut(s)	459
SacII	CCGCGG	1 cut(s)	1129
SaqAI	TTAA	2 cut(s)	699, 789
Sau3AI	GATC	3 cut(s)	394, 502, 1159
Sau96I	GGNCC	1 cut(s)	1194
SchI	GAGTC	2 cut(s)	871, 914
ScrFI	CCNGG	3 cut(s)	831, 904, 968
SduI	GDGCHC	1 cut(s)	841
SfcI	CTRYAG	2 cut(s)	887, 1079
SfoI	GGCGCC	1 cut(s)	780
Sfr303I	CCGCGG	1 cut(s)	1129
SgrBI	CCGCGG	1 cut(s)	1129
SinI	GGWCC	1 cut(s)	1194
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	2 cut(s)	33, 339
SseBI	AGGCCT	1 cut(s)	944
SspDI	GGCGCC	1 cut(s)	778
StuI	AGGCCT	1 cut(s)	944
StyD4I	CCNGG	3 cut(s)	829, 902, 966
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	1114, 1224
TaqI	TCGA	1 cut(s)	516
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	33, 339
TatI	WGTACW	2 cut(s)	951, 1119
TfiI	GAWTC	3 cut(s)	464, 576, 1176
Tru1I	TTAA	2 cut(s)	699, 789
Tru9I	TTAA	2 cut(s)	699, 789
TscAI	CASTG	2 cut(s)	85, 841
TseFI	GTSAC	2 cut(s)	88, 213
TseI	GCWGC	5 cut(s)	22, 208, 406, 882, 1131
Tsp45I	GTSAC	2 cut(s)	88, 213
TspDTI	ATGAA	3 cut(s)	477, 534, 729
TspGWI	ACGGA	2 cut(s)	75, 951
TspRI	CASTG	2 cut(s)	85, 841
Van91I	CCANNNNNTGG	1 cut(s)	1189
VpaK11BI	GGWCC	1 cut(s)	1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.