Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005417

Physical Location & Seq

Genomic Coordinates Reverse (-)

32472644 .. 32472952

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG308300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGAGAAGAAGATGGACACCGCCACCATGCTCGAGGCGGCGACCGCTACGTTAGATTCCTCCAACCTCAAGTTGTGGCCCTCCATGCCATGCCCATCGTCGCCTCCGACTCTGCCGACTCCCTGCCAGTCCTGAAACGCAGCTTCGGTGGCACCGGTGATGTGAAGGTGATGTCCAGGCTGAGTAGGAGCCAGCTGTTGCAGGTGGTGGTGAACTCGCCGGTGGTGCAGATGAGGATGTCGGATCTCGGTGGAGCAGCTGGCTTTGCTGAACAAGCAGAGCGTCATCAGGTCTACCATGGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

102

Amino Acids

11.11

Weight (kDa)

8.29

Isoelectric Point (pI)

65.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22100
fragaria_vesca	FvH4_1g29760 FvH4_6g43750
malus_domestica	MD17G1091100.v1.1
prunus_persica	Prupe.3G222500_v2.0.a1
pyrus_communis	pycom17g08800
rosa_chinensis	RchiOBHm_Chr2g0160481
rosa_laevigata	RLG00000000602 RLG00000006966 RLG00000012534 RLG00000020740 RLG00000021217 RLG00000035791
rosa_multiflora	Rmu_sc0002771.1_g000001 Rmu_ssc0000110.1_g000012
rosa_roxburghii	Rroxscaffold_2G00089790
rosa_rugosa	Rorug02G0234500 Rorug02G0483400 Rorug04G0068000
rosa_samantha	Rh2AG291900 Rh2AG548600 Rh2BG222400 Rh2BG562200 Rh2CG532900 Rh2DG571000 Rh7CG232200 Rh7CG308300 Rh7DG351600
rosa_wichuraiana	Rw2G045420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	3 cut(s)	22, 39, 46
AclWI	GGATC	1 cut(s)	252
AgeI	ACCGGT	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	3 cut(s)	144, 196, 260
AluI	AGCT	3 cut(s)	144, 196, 260
AlwI	GGATC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	141, 257
AsiGI	ACCGGT	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	170, 181, 223
AvaI	CYCGRG	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	153, 269
BccI	CCATC	2 cut(s)	8, 104
BciT130I	CCWGG	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	3 cut(s)	40, 142, 258
BlsI	GCNGC	3 cut(s)	41, 143, 259
Bme1390I	CCNGG	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	154, 191
BmrFI	CCNGG	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	298
BsaWI	WCCGGW	1 cut(s)	155
Bse118I	RCCGGY	2 cut(s)	155, 220
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	153, 269
BsgI	GTGCAG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	152
BshTI	ACCGGT	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	156, 221
BsnI	GGCC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	244
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	3 cut(s)	22, 39, 46
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	154, 191
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	152
BsrFI	RCCGGY	2 cut(s)	155, 220
BsrI	ACTGG	1 cut(s)	128
BssAI	RCCGGY	2 cut(s)	155, 220
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	194, 262
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 86, 150, 226, 266, 275
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	153, 269
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	194, 262
Cfr10I	RCCGGY	2 cut(s)	155, 220
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	272
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	4 cut(s)	29, 86, 91, 299
CviJI	RGCY	7 cut(s)	80, 144, 181, 192, 196, 260, 264
CviKI_1	RGCY	7 cut(s)	80, 144, 181, 192, 196, 260, 264
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	4 cut(s)	32, 89, 94, 302
FaiI	YATR	4 cut(s)	30, 87, 92, 300
FatI	CATG	4 cut(s)	28, 85, 90, 298
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	40, 142, 258
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	3 cut(s)	40, 142, 258
GluI	GCNGC	3 cut(s)	40, 142, 258
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	2 cut(s)	156, 221
HgaI	GACGC	1 cut(s)	272
Hin1II	CATG	4 cut(s)	32, 89, 94, 302
HinfI	GANTC	3 cut(s)	57, 110, 119
HpaII	CCGG	2 cut(s)	156, 221
HphI	GGTGA	3 cut(s)	170, 181, 223
Hpy166II	GTNNAC	2 cut(s)	214, 295
Hpy188I	TCNGA	3 cut(s)	109, 244, 308
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	214, 295
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	202, 229
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 86, 150, 226, 266, 275
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	32, 89, 94, 302
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	189, 254
Lsp1109I	GCAGC	2 cut(s)	153, 269
MaeII	ACGT	1 cut(s)	51
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	20, 23
MflI	RGATCY	1 cut(s)	244
MlyI	GAGTC	2 cut(s)	104, 113
MmeI	TCCRAC	3 cut(s)	88, 132, 222
MnlI	CCTC	6 cut(s)	29, 71, 78, 92, 115, 228
MspA1I	CMGCKG	2 cut(s)	196, 260
MspI	CCGG	2 cut(s)	156, 221
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	6 cut(s)	45, 86, 150, 226, 266, 275
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	4 cut(s)	32, 89, 94, 302
NlaIV	GGNNCC	2 cut(s)	154, 191
PaeR7I	CTCGAG	1 cut(s)	33
PaqCI	CACCTGC	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	57
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	41, 143, 259
PleI	GAGTC	2 cut(s)	104, 113
PpsI	GAGTC	2 cut(s)	104, 113
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	2 cut(s)	154, 191
PspPI	GGNCC	1 cut(s)	79
PspXI	VCTCGAGB	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	2 cut(s)	196, 260
SatI	GCNGC	3 cut(s)	40, 142, 258
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	2 cut(s)	104, 113
ScrFI	CCNGG	1 cut(s)	178
SetI	ASST	8 cut(s)	54, 70, 146, 171, 198, 207, 262, 294
Sfr274I	CTCGAG	1 cut(s)	33
SgrAI	CRCCGGYG	2 cut(s)	155, 220
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	33, 69
SmoI	CTYRAG	2 cut(s)	33, 69
SsiI	CCGC	3 cut(s)	22, 39, 46
StyD4I	CCNGG	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	298
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	34
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	57
TseI	GCWGC	2 cut(s)	141, 257
XhoI	CTCGAG	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.