Rw2G045420

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
72337476 .. 72338390
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G045420.1

Sequence Viewer

Length: 915 bp
ATGGAGAAAACAGAGAAAGAGAGCTTGACGTCACTGCATCAGGAGAGCAGCAGCAAGTCGCCGGAGGAAACTCAGGCCACCTTCACCGGCATGTTCCCCGTCAACCTCCATTCCATCCTCGCCGCCAACACCACCCAGCCCTTACTCCCTCTCTCCTTGTTCGCCGATAACTACTGCAGCATCTCCGCTCCCAAAACCGAACCGCCGATCTTTCACAACCGCAACCACCACCAGGACCAGCCACCACAATACGGCGCCGTTTCGGCTCAGACGTCGTCCCTTATCGACTACTACTCCATCTTCAACCACCTCCCGGACCTCCTCTCCCTCGACCACTCTCCCTACAAGCGCCCTCGCCTCCTCGACCACCAAACCCTAGCCTCCTCCTACCAGCTCTACCCGACGCCGGCCGAATCTCCGCCGGCTCCCGTGGTGGTGCCACGTGGAAGCAGCCTGGCCCGGAAGAGGCGGCAGACGCTGAGCGACAAGATGCGGTGCCTGCAGAAGCTGCTGCCGTGGGAGAAGAAGATGGACAACGCCACCACGCTCGAGGCGGCGCACCGCTACGTCCGGTTCCTCCAGGCTCAGGTCGCCGCCCTCCAGGCCATGCCCATCGTCGCCTCAGACTCGGCCGGCTCCCTCCCAGTCCTGACACACGGCGTCGGCGGCGGCACCTGTGAGGTGGAGGTGCTGTCCACGCTGAGCCGGAGCCAGATGCTGCAAGTGGCGGTGAACTCTCCGGTGGCGCAGATGAGGATGTCGGATCTCGGGAGGTGTGTGTTCTCGGTGGAGCAGCTGGCTCTGCTGAACAAGAAGAGCGTCATCAGGTCTGCCATGGTCTCTGCTTCAGGCCATTACTATCCTACTACTACTAGCTTCATTGACTCTTCTGCTTCTGCCTCTACCACTAATTAA

Protein Analysis

304

Amino Acids

33.3

Weight (kDa)

8.3

Isoelectric Point (pI)

59.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 153 - 194 5.7e-06 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 32, 275
AccB1I GGYRCC 4 cut(s) 254, 436, 495, 671
AccBSI CCGCTC 1 cut(s) 188
AclWI GGATC 1 cut(s) 771
AcoI YGGCCR 2 cut(s) 408, 630
AcuI CTGAAG 1 cut(s) 831
AcvI CACGTG 1 cut(s) 443
AcyI GRCGYC 5 cut(s) 29, 255, 272, 404, 660
AfiI CCNNNNNNNGG 6 cut(s) 232, 251, 313, 406, 465, 586
AgsI TTSAA 1 cut(s) 304
AjnI CCWGG 4 cut(s) 231, 453, 579, 600
AluBI AGCT 5 cut(s) 24, 394, 508, 796, 876
AluI AGCT 5 cut(s) 24, 394, 508, 796, 876
Alw26I GTCTC 1 cut(s) 844
AlwI GGATC 1 cut(s) 771
AlwNI CAGNNNCTG 3 cut(s) 478, 508, 718
Ama87I CYCGRG 2 cut(s) 548, 767
AoxI GGCC 6 cut(s) 75, 408, 456, 603, 630, 850
ApeKI GCWGC 8 cut(s) 48, 51, 177, 450, 508, 511, 718, 793
AspLEI GCGC 4 cut(s) 257, 351, 559, 748
AspS9I GGNCC 3 cut(s) 235, 316, 457
AsuC2I CCSGG 2 cut(s) 314, 460
AsuHPI GGTGA 2 cut(s) 76, 742
AvaI CYCGRG 2 cut(s) 548, 767
AvaII GGWCC 2 cut(s) 235, 316
BanI GGYRCC 4 cut(s) 254, 436, 495, 671
BbrPI CACGTG 1 cut(s) 443
BbvI GCAGC 8 cut(s) 60, 63, 189, 462, 495, 498, 705, 805
BccI CCATC 4 cut(s) 122, 305, 523, 620
BceAI ACGGC 4 cut(s) 242, 268, 499, 673
BciT130I CCWGG 4 cut(s) 233, 455, 581, 602
BcnI CCSGG 2 cut(s) 314, 460
BcoDI GTCTC 1 cut(s) 844
BfaI CTAG 2 cut(s) 377, 873
BfmI CTRYAG 2 cut(s) 175, 500
BfoI RGCGCY 2 cut(s) 258, 352
BglI GCCNNNNNGGC 2 cut(s) 263, 602
BlpI GCTNAGC 2 cut(s) 479, 701
Bme1390I CCNGG 6 cut(s) 233, 314, 455, 460, 581, 602
Bme18I GGWCC 2 cut(s) 235, 316
BmeT110I CYCGRG 2 cut(s) 548, 767
BmgT120I GGNCC 3 cut(s) 235, 316, 457
BmiI GGNNCC 8 cut(s) 256, 426, 438, 497, 575, 637, 673, 710
BmrFI CCNGG 6 cut(s) 233, 314, 455, 460, 581, 602
BmrI ACTGGG 1 cut(s) 638
BmsI GCATC 4 cut(s) 46, 189, 480, 705
BmuI ACTGGG 1 cut(s) 638
BpmI CTGGAG 2 cut(s) 563, 584
Bpu10I CCTNAGC 1 cut(s) 585
Bpu1102I GCTNAGC 2 cut(s) 479, 701
BpuMI CCSGG 2 cut(s) 314, 460
BsaAI YACGTR 1 cut(s) 443
BsaHI GRCGYC 5 cut(s) 29, 255, 272, 404, 660
BsaI GGTCTC 1 cut(s) 844
BsaJI CCNNGG 3 cut(s) 429, 515, 834
BsaWI WCCGGW 2 cut(s) 570, 739
BsaXI ACNNNNNCTCC 6 cut(s) 278, 308, 308, 338, 677, 707
Bsc4I CCNNNNNNNGG 6 cut(s) 232, 251, 313, 406, 465, 586
Bse118I RCCGGY 4 cut(s) 86, 406, 421, 632
Bse1I ACTGG 1 cut(s) 644
BseBI CCWGG 4 cut(s) 233, 455, 581, 602
BseDI CCNNGG 3 cut(s) 429, 515, 834
BseGI GGATG 2 cut(s) 114, 762
BseLI CCNNNNNNNGG 6 cut(s) 232, 251, 313, 406, 465, 586
BseMII CTCAG 6 cut(s) 86, 281, 470, 599, 636, 692
BseNI ACTGG 1 cut(s) 644
BseRI GAGGAG 3 cut(s) 311, 350, 373
BseX3I CGGCCG 2 cut(s) 408, 630
BseXI GCAGC 8 cut(s) 60, 63, 189, 462, 495, 498, 705, 805
BseYI CCCAGC 1 cut(s) 135
Bsh1285I CGRYCG 2 cut(s) 411, 633
BshFI GGCC 6 cut(s) 77, 410, 458, 605, 632, 852
BshNI GGYRCC 4 cut(s) 254, 436, 495, 671
BsiEI CGRYCG 2 cut(s) 411, 633
BsiHKCI CYCGRG 2 cut(s) 548, 767
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 6 cut(s) 232, 251, 313, 406, 465, 586
BsmAI GTCTC 1 cut(s) 844
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 6 cut(s) 77, 410, 458, 605, 632, 852
Bso31I GGTCTC 1 cut(s) 844
BsoBI CYCGRG 2 cut(s) 548, 767
Bsp143I GATC 2 cut(s) 207, 763
Bsp1720I GCTNAGC 2 cut(s) 479, 701
Bsp19I CCATGG 1 cut(s) 834
BspANI GGCC 6 cut(s) 77, 410, 458, 605, 632, 852
BspCNI CTCAG 6 cut(s) 85, 280, 471, 598, 635, 693
BspLI GGNNCC 8 cut(s) 256, 426, 438, 497, 575, 637, 673, 710
BspMAI CTGCAG 2 cut(s) 179, 504
BspPI GGATC 1 cut(s) 771
BspQI GCTCTTC 1 cut(s) 809
BspT107I GGYRCC 4 cut(s) 254, 436, 495, 671
BspTNI GGTCTC 1 cut(s) 844
BsrBI CCGCTC 1 cut(s) 188
BsrFI RCCGGY 4 cut(s) 86, 406, 421, 632
BsrI ACTGG 1 cut(s) 644
BssAI RCCGGY 4 cut(s) 86, 406, 421, 632
BssECI CCNNGG 3 cut(s) 429, 515, 834
BssMI GATC 2 cut(s) 207, 763
BssNI GRCGYC 5 cut(s) 29, 255, 272, 404, 660
BssT1I CCWWGG 1 cut(s) 834
Bst2UI CCWGG 4 cut(s) 233, 455, 581, 602
Bst6I CTCTTC 3 cut(s) 458, 809, 892
BstACI GRCGYC 5 cut(s) 29, 255, 272, 404, 660
BstAPI GCANNNNNTGC 1 cut(s) 508
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 5 cut(s) 408, 423, 500, 634, 798
BstDEI CTNAG 6 cut(s) 72, 267, 479, 585, 622, 701
BstDSI CCRYGG 3 cut(s) 429, 515, 834
BstF5I GGATG 2 cut(s) 114, 762
BstH2I RGCGCY 2 cut(s) 258, 352
BstHHI GCGC 4 cut(s) 257, 351, 559, 748
BstKTI GATC 2 cut(s) 210, 766
BstMAI GTCTC 1 cut(s) 844
BstMBI GATC 2 cut(s) 207, 763
BstMCI CGRYCG 2 cut(s) 411, 633
BstMWI GCNNNNNNNGC 9 cut(s) 263, 475, 499, 508, 590, 602, 666, 697, 802
BstNI CCWGG 4 cut(s) 233, 455, 581, 602
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 6 cut(s) 231, 312, 453, 458, 579, 600
BstSFI CTRYAG 2 cut(s) 175, 500
BstV1I GCAGC 8 cut(s) 60, 63, 189, 462, 495, 498, 705, 805
BstX2I RGATCY 1 cut(s) 763
BstYI RGATCY 1 cut(s) 763
BstZI CGGCCG 2 cut(s) 408, 630
BsuRI GGCC 6 cut(s) 77, 410, 458, 605, 632, 852
BtgI CCRYGG 3 cut(s) 429, 515, 834
BtsCI GGATG 2 cut(s) 114, 762
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 5 cut(s) 408, 423, 500, 634, 798
CaiI CAGNNNCTG 3 cut(s) 478, 508, 718
CfoI GCGC 4 cut(s) 257, 351, 559, 748
Cfr10I RCCGGY 4 cut(s) 86, 406, 421, 632
Cfr13I GGNCC 3 cut(s) 235, 316, 457
CseI GACGC 4 cut(s) 412, 484, 649, 808
CviAII CATG 3 cut(s) 91, 607, 835
DdeI CTNAG 6 cut(s) 72, 267, 479, 585, 622, 701
DinI GGCGCC 1 cut(s) 256
DpnI GATC 2 cut(s) 209, 765
DpnII GATC 2 cut(s) 207, 763
EaeI YGGCCR 2 cut(s) 408, 630
EagI CGGCCG 2 cut(s) 408, 630
Eam1104I CTCTTC 3 cut(s) 458, 809, 892
EarI CTCTTC 3 cut(s) 458, 809, 892
EciI GGCGGA 1 cut(s) 408
EclXI CGGCCG 2 cut(s) 408, 630
Eco130I CCWWGG 1 cut(s) 834
Eco31I GGTCTC 1 cut(s) 844
Eco47I GGWCC 2 cut(s) 235, 316
Eco52I CGGCCG 2 cut(s) 408, 630
Eco57I CTGAAG 1 cut(s) 831
Eco72I CACGTG 1 cut(s) 443
Eco88I CYCGRG 2 cut(s) 548, 767
EcoRII CCWGG 4 cut(s) 231, 453, 579, 600
EcoT14I CCWWGG 1 cut(s) 834
EgeI GGCGCC 1 cut(s) 256
EheI GGCGCC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 834
FaeI CATG 3 cut(s) 94, 610, 838
FaiI YATR 3 cut(s) 92, 608, 836
FaqI GGGAC 1 cut(s) 262
FatI CATG 3 cut(s) 90, 606, 834
FokI GGATG 2 cut(s) 101, 769
FspBI CTAG 2 cut(s) 377, 873
GlaI GCGC 4 cut(s) 256, 350, 558, 747
GsaI CCCAGC 1 cut(s) 139
GsuI CTGGAG 2 cut(s) 563, 584
HaeII RGCGCY 2 cut(s) 258, 352
HaeIII GGCC 6 cut(s) 77, 410, 458, 605, 632, 852
HgaI GACGC 4 cut(s) 412, 484, 649, 808
HhaI GCGC 4 cut(s) 257, 351, 559, 748
Hin1I GRCGYC 5 cut(s) 29, 255, 272, 404, 660
Hin1II CATG 3 cut(s) 94, 610, 838
Hin6I GCGC 4 cut(s) 255, 349, 557, 746
HinP1I GCGC 4 cut(s) 255, 349, 557, 746
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 3 cut(s) 413, 626, 884
HphI GGTGA 2 cut(s) 76, 742
Hpy166II GTNNAC 3 cut(s) 103, 696, 733
Hpy188I TCNGA 3 cut(s) 270, 625, 763
Hpy188III TCNNGA 3 cut(s) 41, 649, 769
Hpy8I GTNNAC 3 cut(s) 103, 696, 733
Hpy99I CGWCG 4 cut(s) 277, 406, 620, 665
HpyAV CCTTC 1 cut(s) 91
HpyCH4IV ACGT 4 cut(s) 29, 272, 442, 567
HpyCH4V TGCA 4 cut(s) 37, 177, 502, 721
HpyF10VI GCNNNNNNNGC 9 cut(s) 263, 475, 499, 508, 590, 602, 666, 697, 802
HpyF3I CTNAG 6 cut(s) 72, 267, 479, 585, 622, 701
HpySE526I ACGT 4 cut(s) 29, 272, 442, 567
Hsp92I GRCGYC 5 cut(s) 29, 255, 272, 404, 660
Hsp92II CATG 3 cut(s) 94, 610, 838
HspAI GCGC 4 cut(s) 255, 349, 557, 746
KasI GGCGCC 1 cut(s) 254
KroI GCCGGC 3 cut(s) 406, 421, 632
KroNI GCCGGC 3 cut(s) 408, 423, 634
Kzo9I GATC 2 cut(s) 207, 763
LguI GCTCTTC 1 cut(s) 809
LmnI GCTCC 5 cut(s) 193, 430, 641, 708, 790
Lsp1109I GCAGC 8 cut(s) 60, 63, 189, 462, 495, 498, 705, 805
LweI GCATC 4 cut(s) 46, 189, 480, 705
MaeI CTAG 2 cut(s) 377, 873
MaeII ACGT 4 cut(s) 29, 272, 442, 567
MaeIII GTNAC 1 cut(s) 30
MalI GATC 2 cut(s) 209, 765
MbiI CCGCTC 1 cut(s) 188
MboI GATC 2 cut(s) 207, 763
MboII GAAGA 6 cut(s) 292, 475, 535, 538, 826, 879
MflI RGATCY 1 cut(s) 763
MluCI AATT 1 cut(s) 910
Mly113I GGCGCC 1 cut(s) 255
MlyI GAGTC 2 cut(s) 620, 878
MmeI TCCRAC 1 cut(s) 741
MroNI GCCGGC 3 cut(s) 406, 421, 632
MseI TTAA 1 cut(s) 913
MslI CAYNNNNRTG 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 796
MspR9I CCNGG 6 cut(s) 233, 314, 455, 460, 581, 602
MvaI CCWGG 4 cut(s) 233, 455, 581, 602
MwoI GCNNNNNNNGC 9 cut(s) 263, 475, 499, 508, 590, 602, 666, 697, 802
NaeI GCCGGC 3 cut(s) 408, 423, 634
NarI GGCGCC 1 cut(s) 255
NciI CCSGG 2 cut(s) 314, 460
NcoI CCATGG 1 cut(s) 834
NdeII GATC 2 cut(s) 207, 763
NgoMIV GCCGGC 3 cut(s) 406, 421, 632
NlaIII CATG 3 cut(s) 94, 610, 838
NlaIV GGNNCC 8 cut(s) 256, 426, 438, 497, 575, 637, 673, 710
NmeAIII GCCGAG 1 cut(s) 608
NmuCI GTSAC 1 cut(s) 30
NspI RCATGY 1 cut(s) 94
PaeR7I CTCGAG 1 cut(s) 548
PciSI GCTCTTC 1 cut(s) 809
PcsI WCGNNNNNNNCGW 1 cut(s) 269
PdiI GCCGGC 3 cut(s) 408, 423, 634
PfeI GAWTC 1 cut(s) 413
PflFI GACNNNGTC 1 cut(s) 274
PfoI TCCNGGA 1 cut(s) 312
PleI GAGTC 2 cut(s) 620, 878
PluTI GGCGCC 1 cut(s) 258
PmaCI CACGTG 1 cut(s) 443
PmlI CACGTG 1 cut(s) 443
PpsI GAGTC 2 cut(s) 620, 878
Ppu21I YACGTR 1 cut(s) 443
Psp6I CCWGG 4 cut(s) 231, 453, 579, 600
PspCI CACGTG 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 4 cut(s) 231, 453, 579, 600
PspN4I GGNNCC 8 cut(s) 256, 426, 438, 497, 575, 637, 673, 710
PspPI GGNCC 3 cut(s) 235, 316, 457
PspXI VCTCGAGB 1 cut(s) 548
PstI CTGCAG 2 cut(s) 179, 504
PstNI CAGNNNCTG 3 cut(s) 478, 508, 718
PsuI RGATCY 1 cut(s) 763
PsyI GACNNNGTC 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 796
RseI CAYNNNNRTG 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 809
SaqAI TTAA 1 cut(s) 913
Sau3AI GATC 2 cut(s) 207, 763
Sau96I GGNCC 3 cut(s) 235, 316, 457
SchI GAGTC 2 cut(s) 620, 878
ScrFI CCNGG 6 cut(s) 233, 314, 455, 460, 581, 602
SfaNI GCATC 4 cut(s) 46, 189, 480, 705
SfcI CTRYAG 2 cut(s) 175, 500
SfoI GGCGCC 1 cut(s) 256
Sfr274I CTCGAG 1 cut(s) 548
SinI GGWCC 2 cut(s) 235, 316
SlaI CTCGAG 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 1 cut(s) 910
SspDI GGCGCC 1 cut(s) 254
SspMI CTAG 2 cut(s) 377, 873
StyD4I CCNGG 6 cut(s) 231, 312, 453, 458, 579, 600
StyI CCWWGG 1 cut(s) 834
TaiI ACGT 4 cut(s) 32, 275, 445, 570
TaqI TCGA 4 cut(s) 285, 330, 363, 549
TasI AATT 1 cut(s) 910
TauI GCSGC 6 cut(s) 125, 472, 557, 596, 669, 672
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 1 cut(s) 913
Tru9I TTAA 1 cut(s) 913
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 8 cut(s) 48, 51, 177, 450, 508, 511, 718, 793
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 868
TspRI CASTG 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 274
VpaK11BI GGWCC 2 cut(s) 235, 316
XceI RCATGY 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 548
XspI CTAG 2 cut(s) 377, 873
ZraI GACGTC 2 cut(s) 30, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.