Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005417

Physical Location & Seq

Genomic Coordinates Forward (+)

23406937 .. 23411970

Gene Structure 5034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0234500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGTGCTGCCGGCTCCAAACTCGAGAAAGCTCTCGGCGACCAGTTCCCCGAAGGCGAGCGATATTTCGGCCTTGAGAATTTCGGCAATACTTGCTATTGTAACAGCGTTTTGCAGGCGCTTTATTTTTGTGTTCCATTCCGTGAACAGTTGTTAGAATACTATTCCAACAGTAAGAATATTGGGGATGCAGAAGAAAATCTCTTGACATGCTTAGCTGATTTGTTTACGCAGATAAGTTCACAAAAGAAGAAGACAGGTGTAATTGCCCCAAAGCGTTTCGTACAGAGATTGAAGAAACAAAATGAACTCTTTCGTAGTTACATGCATCAGGATGCTCATGAATTCTTAAACTTTTTGCTAAATGAACTTGTCGACATACTGGAGAAGGAAGCACAAGCTGCAAAAAGTGATCAAGAAACTTCTTCACCTCCTGAGAAGCTGGCAAATGGTCCAAAGAATGCTCAAGCTAATGGTTCTCATAAAGATCCCTTAGTTACGTGGGTGCACAAAAATTTTCAGGGAATACTCACCAATGAAACGAGGTGCTTACGGTGTGAGACAGTGACCGCAAGAGATGAAACATTTTTAGACTTGAGCCTTGATATTGAACAGAACAGTTCAATAACAAGCTGTCTGAAAAACTTCAGTTCAACAGAGACATTGAATGCTGAGGACAAATTTTTTTGCGACAAGTGCTGCAGTTTGCAAGAAGCACAGAAGAGGATGAAGATAAAGAAGCCACCTCACGTTCTGGTCATACATCTGAAGCGGTTCAAGTACATTGAGCAGCTTGGCCGTTACAAAAAGCTATCTTACCGGGTTGTATTCCCGCTTGAGCTCAAGTTGAGCAACACGGTTGAAGATGCAGAGGCCGAGTATTCCCTGTTTGCAGTTGTTGTCCATGTTGGGAGTGGTCCAAACCATGGACACTATGTTAGCCTTGTGAAAAGCCATAATCACTGGTTATTTTTTGATGACGAAAATGTGGAGATGATTGATGAGTCTGCTGTGCAAACTTTCTTTGGGTCAGCACAGGAGTATTCGAGTAATACAGATCATGGATACATCCTGTTCTATGAAAGCCTGGGCACCAGTAACAAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

42.02

Weight (kDa)

5.88

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	23 - 360	6.5e-67	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	24 - 329	2.6e-26	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22100
fragaria_vesca	FvH4_1g29760 FvH4_6g43750
malus_domestica	MD17G1091100.v1.1
prunus_persica	Prupe.3G222500_v2.0.a1
pyrus_communis	pycom17g08800
rosa_chinensis	RchiOBHm_Chr2g0160481
rosa_laevigata	RLG00000000602 RLG00000006966 RLG00000012534 RLG00000020740 RLG00000021217 RLG00000035791
rosa_multiflora	Rmu_sc0002771.1_g000001 Rmu_ssc0000110.1_g000012
rosa_roxburghii	Rroxscaffold_2G00089790
rosa_rugosa	Rorug02G0234500 Rorug02G0483400 Rorug04G0068000
rosa_samantha	Rh2AG291900 Rh2AG548600 Rh2BG222400 Rh2BG562200 Rh2CG532900 Rh2DG571000 Rh7CG232200 Rh7CG308300 Rh7DG351600
rosa_wichuraiana	Rw2G045420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1091
AccB7I	CCANNNNNTGG	1 cut(s)	926
AccI	GTMKAC	1 cut(s)	375
AciI	CCGC	3 cut(s)	570, 772, 833
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	796
AcsI	RAATTY	4 cut(s)	79, 344, 514, 680
AcuI	CTGAAG	2 cut(s)	631, 788
AfaI	GTAC	2 cut(s)	285, 782
AfiI	CCNNNNNNNGG	1 cut(s)	926
AgsI	TTSAA	7 cut(s)	295, 611, 624, 654, 667, 778, 863
AjnI	CCWGG	1 cut(s)	1086
AluBI	AGCT	9 cut(s)	32, 218, 401, 442, 470, 633, 793, 811, 841
AluI	AGCT	9 cut(s)	32, 218, 401, 442, 470, 633, 793, 811, 841
Alw21I	GWGCWC	2 cut(s)	510, 843
Alw26I	GTCTC	2 cut(s)	554, 653
Alw44I	GTGCAC	1 cut(s)	506
AlwI	GGATC	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	3 cut(s)	70, 796, 873
ApaLI	GTGCAC	1 cut(s)	506
ApeKI	GCWGC	4 cut(s)	8, 401, 699, 790
ApoI	RAATTY	4 cut(s)	79, 344, 514, 680
Asp700I	GAANNNNTTC	3 cut(s)	312, 644, 773
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	2 cut(s)	452, 917
AsuC2I	CCSGG	1 cut(s)	821
AsuHPI	GGTGA	2 cut(s)	420, 523
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	452, 917
BaeGI	GKGCMC	2 cut(s)	510, 1094
BanI	GGYRCC	1 cut(s)	1091
BanII	GRGCYC	1 cut(s)	843
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	2 cut(s)	510, 843
BbvCI	CCTCAGC	1 cut(s)	672
BbvI	GCAGC	3 cut(s)	388, 686, 802
BceAI	ACGGC	1 cut(s)	783
BciT130I	CCWGG	1 cut(s)	1088
BciVI	GTATCC	1 cut(s)	1058
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	821
BcoDI	GTCTC	2 cut(s)	554, 653
BfmI	CTRYAG	1 cut(s)	700
BfoI	RGCGCY	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	1058
BisI	GCNGC	4 cut(s)	9, 402, 700, 791
BlpI	GCTNAGC	1 cut(s)	214
BlsI	GCNGC	4 cut(s)	10, 403, 701, 792
Bme1390I	CCNGG	2 cut(s)	821, 1088
Bme18I	GGWCC	2 cut(s)	452, 917
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	452, 917
BmiI	GGNNCC	2 cut(s)	16, 1093
BmrFI	CCNGG	2 cut(s)	821, 1088
BmsI	GCATC	4 cut(s)	178, 325, 337, 856
BpiI	GAAGAC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	672
Bpu1102I	GCTNAGC	1 cut(s)	214
BpuEI	CTTGAG	5 cut(s)	95, 450, 616, 827, 857
BpuMI	CCSGG	1 cut(s)	821
BsaAI	YACGTR	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	925, 1087
Bsc4I	CCNNNNNNNGG	1 cut(s)	926
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	4 cut(s)	43, 387, 968, 1095
BseBI	CCWGG	1 cut(s)	1088
BseDI	CCNNGG	2 cut(s)	925, 1087
BseGI	GGATG	4 cut(s)	193, 340, 732, 1068
BseLI	CCNNNNNNNGG	1 cut(s)	926
BseMII	CTCAG	2 cut(s)	426, 663
BseNI	ACTGG	4 cut(s)	43, 387, 968, 1095
BseSI	GKGCMC	2 cut(s)	510, 1094
BseXI	GCAGC	3 cut(s)	388, 686, 802
BshFI	GGCC	3 cut(s)	72, 798, 875
BshNI	GGYRCC	1 cut(s)	1091
BsiHKAI	GWGCWC	2 cut(s)	510, 843
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	12, 820
BslI	CCNNNNNNNGG	1 cut(s)	926
BsmAI	GTCTC	2 cut(s)	554, 653
BsmI	GAATGC	2 cut(s)	466, 673
BsnI	GGCC	3 cut(s)	72, 798, 875
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	3 cut(s)	510, 843, 1094
Bsp143I	GATC	3 cut(s)	412, 487, 1057
Bsp1720I	GCTNAGC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	925
BspACI	CCGC	3 cut(s)	570, 772, 833
BspANI	GGCC	3 cut(s)	72, 798, 875
BspCNI	CTCAG	2 cut(s)	427, 664
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	16, 1093
BspMAI	CTGCAG	1 cut(s)	704
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	1091
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	4 cut(s)	43, 387, 968, 1095
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	925, 1087
BssMI	GATC	3 cut(s)	412, 487, 1057
BssT1I	CCWWGG	1 cut(s)	925
Bst2UI	CCWGG	1 cut(s)	1088
Bst4CI	ACNGT	6 cut(s)	150, 173, 555, 565, 620, 859
Bst6I	CTCTTC	1 cut(s)	716
BstAPI	GCANNNNNTGC	2 cut(s)	93, 401
BstBAI	YACGTR	1 cut(s)	501
BstC8I	GCNNGC	4 cut(s)	13, 59, 117, 444
BstDEI	CTNAG	4 cut(s)	214, 435, 493, 672
BstDSI	CCRYGG	1 cut(s)	925
BstF5I	GGATG	4 cut(s)	193, 340, 732, 1068
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	3 cut(s)	415, 490, 1060
BstMAI	GTCTC	2 cut(s)	554, 653
BstMBI	GATC	3 cut(s)	412, 487, 1057
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 401, 696
BstNI	CCWGG	1 cut(s)	1088
BstNSI	RCATGY	2 cut(s)	213, 328
BstSCI	CCNGG	2 cut(s)	819, 1086
BstSFI	CTRYAG	1 cut(s)	700
BstSLI	GKGCMC	2 cut(s)	510, 1094
BstV1I	GCAGC	3 cut(s)	388, 686, 802
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BsuI	GTATCC	1 cut(s)	1058
BsuRI	GGCC	3 cut(s)	72, 798, 875
BtgI	CCRYGG	1 cut(s)	925
BtsCI	GGATG	4 cut(s)	193, 340, 732, 1068
BtsIMutI	CAGTG	2 cut(s)	570, 961
Cac8I	GCNNGC	4 cut(s)	13, 59, 117, 444
CciI	TCATGA	1 cut(s)	340
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	452, 917
Csp6I	GTAC	2 cut(s)	284, 781
CviAII	CATG	6 cut(s)	210, 325, 341, 905, 926, 1061
CviQI	GTAC	2 cut(s)	284, 781
DdeI	CTNAG	4 cut(s)	214, 435, 493, 672
DpnI	GATC	3 cut(s)	414, 489, 1059
DpnII	GATC	3 cut(s)	412, 487, 1057
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	1 cut(s)	716
EarI	CTCTTC	1 cut(s)	716
Ecl136II	GAGCTC	1 cut(s)	841
Eco130I	CCWWGG	1 cut(s)	925
Eco24I	GRGCYC	1 cut(s)	843
Eco47I	GGWCC	2 cut(s)	452, 917
Eco53kI	GAGCTC	1 cut(s)	841
Eco57I	CTGAAG	2 cut(s)	631, 788
Eco88I	CYCGRG	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	841
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	1086
EcoT14I	CCWWGG	1 cut(s)	925
EcoT22I	ATGCAT	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	843
ErhI	CCWWGG	1 cut(s)	925
FaeI	CATG	6 cut(s)	213, 328, 344, 908, 929, 1064
FatI	CATG	6 cut(s)	209, 324, 340, 904, 925, 1060
FauI	CCCGC	1 cut(s)	840
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	4 cut(s)	9, 402, 700, 791
FokI	GGATG	4 cut(s)	200, 347, 739, 1055
FriOI	GRGCYC	1 cut(s)	843
Fsp4HI	GCNGC	4 cut(s)	9, 402, 700, 791
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	9, 402, 700, 791
GsuI	CTGGAG	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	3 cut(s)	72, 798, 875
HapII	CCGG	2 cut(s)	12, 820
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	6 cut(s)	213, 328, 344, 908, 929, 1064
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	1 cut(s)	1004
HpaII	CCGG	2 cut(s)	12, 820
HphI	GGTGA	2 cut(s)	420, 523
Hpy166II	GTNNAC	5 cut(s)	146, 228, 242, 376, 508
Hpy188I	TCNGA	2 cut(s)	639, 768
Hpy188III	TCNNGA	6 cut(s)	25, 205, 332, 341, 416, 434
Hpy8I	GTNNAC	5 cut(s)	146, 228, 242, 376, 508
HpyAV	CCTTC	2 cut(s)	47, 382
HpyCH4III	ACNGT	6 cut(s)	150, 173, 555, 565, 620, 859
HpyCH4IV	ACGT	2 cut(s)	500, 750
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 401, 696
HpyF3I	CTNAG	4 cut(s)	214, 435, 493, 672
HpySE526I	ACGT	2 cut(s)	500, 750
Hsp92II	CATG	6 cut(s)	213, 328, 344, 908, 929, 1064
HspAI	GCGC	1 cut(s)	119
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	412, 487, 1057
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	3 cut(s)	388, 686, 802
LweI	GCATC	4 cut(s)	178, 325, 337, 856
MaeII	ACGT	2 cut(s)	500, 750
MaeIII	GTNAC	6 cut(s)	101, 320, 496, 565, 800, 1097
MalI	GATC	3 cut(s)	414, 489, 1059
MboI	GATC	3 cut(s)	412, 487, 1057
MboII	GAAGA	8 cut(s)	206, 262, 265, 307, 417, 733, 742, 875
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	3 cut(s)	510, 843, 1094
MluCI	AATT	5 cut(s)	79, 264, 344, 514, 680
MlyI	GAGTC	1 cut(s)	1013
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	6 cut(s)	441, 537, 667, 717, 756, 865
Mph1103I	ATGCAT	1 cut(s)	330
MroNI	GCCGGC	1 cut(s)	11
MroXI	GAANNNNTTC	3 cut(s)	312, 644, 773
MseI	TTAA	2 cut(s)	350, 1108
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	2 cut(s)	12, 820
MspR9I	CCNGG	2 cut(s)	821, 1088
Mva1269I	GAATGC	2 cut(s)	466, 673
MvaI	CCWGG	1 cut(s)	1088
MwoI	GCNNNNNNNGC	3 cut(s)	93, 401, 696
NaeI	GCCGGC	1 cut(s)	13
NciI	CCSGG	1 cut(s)	821
NcoI	CCATGG	1 cut(s)	925
NdeII	GATC	3 cut(s)	412, 487, 1057
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	6 cut(s)	213, 328, 344, 908, 929, 1064
NlaIV	GGNNCC	2 cut(s)	16, 1093
NmeAIII	GCCGAG	2 cut(s)	15, 901
NmuCI	GTSAC	1 cut(s)	565
NsiI	ATGCAT	1 cut(s)	330
NspI	RCATGY	2 cut(s)	213, 328
PaeR7I	CTCGAG	1 cut(s)	23
PagI	TCATGA	1 cut(s)	340
PctI	GAATGC	2 cut(s)	466, 673
PdiI	GCCGGC	1 cut(s)	13
PdmI	GAANNNNTTC	3 cut(s)	312, 644, 773
PflMI	CCANNNNNTGG	1 cut(s)	926
PkrI	GCNGC	4 cut(s)	10, 403, 701, 792
PleI	GAGTC	1 cut(s)	1012
PpsI	GAGTC	1 cut(s)	1012
Ppu21I	YACGTR	1 cut(s)	501
Psp124BI	GAGCTC	1 cut(s)	843
Psp6I	CCWGG	1 cut(s)	1086
PspGI	CCWGG	1 cut(s)	1086
PspN4I	GGNNCC	2 cut(s)	16, 1093
PspPI	GGNCC	2 cut(s)	452, 917
PstI	CTGCAG	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	487
RsaI	GTAC	2 cut(s)	285, 782
RsaNI	GTAC	2 cut(s)	284, 781
RseI	CAYNNNNRTG	1 cut(s)	333
SacI	GAGCTC	1 cut(s)	843
SalI	GTCGAC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	350, 1108
SatI	GCNGC	4 cut(s)	9, 402, 700, 791
Sau3AI	GATC	3 cut(s)	412, 487, 1057
Sau96I	GGNCC	2 cut(s)	452, 917
SchI	GAGTC	1 cut(s)	1013
ScrFI	CCNGG	2 cut(s)	821, 1088
SduI	GDGCHC	3 cut(s)	510, 843, 1094
SfaNI	GCATC	4 cut(s)	178, 325, 337, 856
SfcI	CTRYAG	1 cut(s)	700
Sfr274I	CTCGAG	1 cut(s)	23
SinI	GGWCC	2 cut(s)	452, 917
SlaI	CTCGAG	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	6 cut(s)	23, 74, 465, 595, 836, 842
SmoI	CTYRAG	6 cut(s)	23, 74, 465, 595, 836, 842
Sse9I	AATT	5 cut(s)	79, 264, 344, 514, 680
SsiI	CCGC	3 cut(s)	570, 772, 833
SspI	AATATT	1 cut(s)	181
SstI	GAGCTC	1 cut(s)	843
StyD4I	CCNGG	2 cut(s)	819, 1086
StyI	CCWWGG	1 cut(s)	925
TaaI	ACNGT	6 cut(s)	150, 173, 555, 565, 620, 859
TaiI	ACGT	2 cut(s)	503, 753
TaqI	TCGA	3 cut(s)	24, 375, 1046
TasI	AATT	5 cut(s)	79, 264, 344, 514, 680
TatI	WGTACW	1 cut(s)	780
Tru1I	TTAA	2 cut(s)	350, 1108
Tru9I	TTAA	2 cut(s)	350, 1108
TscAI	CASTG	2 cut(s)	570, 968
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	4 cut(s)	8, 401, 699, 790
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	7 cut(s)	321, 357, 381, 552, 594, 743, 1095
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	570, 968
Van91I	CCANNNNNTGG	1 cut(s)	926
VneI	GTGCAC	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	452, 917
XapI	RAATTY	4 cut(s)	79, 344, 514, 680
XceI	RCATGY	2 cut(s)	213, 328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	911
XhoI	CTCGAG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	375
XmnI	GAANNNNTTC	3 cut(s)	312, 644, 773
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.