Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005417

Physical Location & Seq

Genomic Coordinates Forward (+)

11717768 .. 11718664

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTCACTGCTTGTGAAGGATCAGGAGAGCAGCAGCGGTACCACCAAGTCGCCGGAGGAAACTCAGGCCACCTTCACCGGCATGTTCCCCGTCAACTTCCATTCCATCCTCGCCGCCAACACCACCCAGCCCTTACTCCCTCTCTCCTTGTTCGCCGATAACTACTGCAGCCTCTCCGCTCCCAAAACCGAACCGCCGCTCTACCACCAGCAGCCACCACAATACGGCGCCGTTTCGGCTCAGACGTCGTCCCTCAACGACTACTACTCCATCTTCAACCACCTCCCGGACCTCCTCTGCCTCGACCACTCTCCCTACAAGCGCCCTCGCCTCCTCGACCACCAAACCCTAGCCTCCTCCTGCCAGCTCTACCCGACGCCGCCAGAATCTCAGCCGGCTCCGGTGGTGGTGGTGCCACGTGGAAGCAGCCTGGCACGGAAGAGGCGGCAGACGCTGAGCGACAAGATGCGGTGCCTGCAGAAGCTGCTGCCGTGGGAGAAGAAGATGGACAACGCCACCATGCTCGAGGCGGCGCACCGCTACGTCCGGTTCCTCCAGGCACAGGTCGCCGCCCTCCAGGCCATGCCCATTGTCGCCTCCGACTCCGCCGGCTCCCTCCCCGTCCTGACAAGCGGCGTCGGTGGCGGCACCGGTGAGGTGGAGGTGCTGTCCAGGCTGAGCCGGAGCCAGATGCTGCAGGTGGCGGTGAACTCGCCGGTGGCGCAGATGAGGATGTCGGATCTCGGGAGGTGTGTGTTCTCGGTGGAGCAGCTGGCTTTGCTGAACAAGAAGAGCGTCATCAGGTCTGCCATGGTCTCTGCTTCAGGCCATTACTATCCCACTACTACTAGCTTCATGGACTCTCCTGCTTCTGCCTCGGGTTTAGGTTTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

298

Amino Acids

32.46

Weight (kDa)

8.76

Isoelectric Point (pI)

64.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22100
fragaria_vesca	FvH4_1g29760 FvH4_6g43750
malus_domestica	MD17G1091100.v1.1
prunus_persica	Prupe.3G222500_v2.0.a1
pyrus_communis	pycom17g08800
rosa_chinensis	RchiOBHm_Chr2g0160481
rosa_laevigata	RLG00000000602 RLG00000006966 RLG00000012534 RLG00000020740 RLG00000021217 RLG00000035791
rosa_multiflora	Rmu_sc0002771.1_g000001 Rmu_ssc0000110.1_g000012
rosa_roxburghii	Rroxscaffold_2G00089790
rosa_rugosa	Rorug02G0234500 Rorug02G0483400 Rorug04G0068000
rosa_samantha	Rh2AG291900 Rh2AG548600 Rh2BG222400 Rh2BG562200 Rh2CG532900 Rh2DG571000 Rh7CG232200 Rh7CG308300 Rh7DG351600
rosa_wichuraiana	Rw2G045420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	688
AatII	GACGTC	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	688
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	5 cut(s)	38, 227, 412, 471, 647
AccBSI	CCGCTC	2 cut(s)	179, 199
AclWI	GGATC	2 cut(s)	27, 747
AcuI	CTGAAG	1 cut(s)	807
AcvI	CACGTG	1 cut(s)	419
AcyI	GRCGYC	4 cut(s)	228, 245, 377, 636
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	3 cut(s)	224, 286, 562
AgeI	ACCGGT	1 cut(s)	650
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	4 cut(s)	429, 555, 576, 671
AluBI	AGCT	4 cut(s)	367, 484, 772, 852
AluI	AGCT	4 cut(s)	367, 484, 772, 852
Alw26I	GTCTC	1 cut(s)	820
AlwI	GGATC	2 cut(s)	27, 747
AlwNI	CAGNNNCTG	3 cut(s)	454, 484, 694
Ama87I	CYCGRG	3 cut(s)	524, 743, 877
AoxI	GGCC	3 cut(s)	66, 579, 826
ApeKI	GCWGC	9 cut(s)	30, 33, 168, 211, 426, 484, 487, 694, 769
AsiGI	ACCGGT	1 cut(s)	650
Asp718I	GGTACC	1 cut(s)	38
AspLEI	GCGC	4 cut(s)	230, 324, 535, 724
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	3 cut(s)	67, 665, 718
AvaI	CYCGRG	3 cut(s)	524, 743, 877
AvaII	GGWCC	1 cut(s)	289
BanI	GGYRCC	5 cut(s)	38, 227, 412, 471, 647
BbrPI	CACGTG	1 cut(s)	419
BbvI	GCAGC	9 cut(s)	42, 45, 180, 223, 438, 471, 474, 681, 781
BccI	CCATC	3 cut(s)	113, 278, 499
BceAI	ACGGC	3 cut(s)	215, 241, 475
BciT130I	CCWGG	4 cut(s)	431, 557, 578, 673
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	820
BfaI	CTAG	2 cut(s)	350, 849
BfmI	CTRYAG	3 cut(s)	166, 476, 695
BfoI	RGCGCY	2 cut(s)	231, 325
BfuAI	ACCTGC	1 cut(s)	688
BglI	GCCNNNNNGGC	2 cut(s)	236, 578
BlpI	GCTNAGC	2 cut(s)	455, 677
Bme1390I	CCNGG	5 cut(s)	287, 431, 557, 578, 673
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	3 cut(s)	524, 743, 877
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	9 cut(s)	40, 229, 399, 414, 473, 551, 613, 649, 686
BmrFI	CCNGG	5 cut(s)	287, 431, 557, 578, 673
BmsI	GCATC	2 cut(s)	456, 681
BpmI	CTGGAG	2 cut(s)	539, 560
Bpu1102I	GCTNAGC	2 cut(s)	455, 677
BpuMI	CCSGG	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	419
BsaHI	GRCGYC	4 cut(s)	228, 245, 377, 636
BsaI	GGTCTC	1 cut(s)	820
BsaJI	CCNNGG	3 cut(s)	491, 810, 876
BsaWI	WCCGGW	3 cut(s)	400, 546, 650
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 281, 653, 683
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 286, 562
Bse118I	RCCGGY	5 cut(s)	77, 394, 608, 650, 715
BseBI	CCWGG	4 cut(s)	431, 557, 578, 673
BseDI	CCNNGG	3 cut(s)	491, 810, 876
BseGI	GGATG	2 cut(s)	105, 738
BseLI	CCNNNNNNNGG	3 cut(s)	224, 286, 562
BseMII	CTCAG	5 cut(s)	77, 254, 404, 446, 668
BseRI	GAGGAG	3 cut(s)	284, 323, 346
BseXI	GCAGC	9 cut(s)	42, 45, 180, 223, 438, 471, 474, 681, 781
BseYI	CCCAGC	1 cut(s)	126
BshFI	GGCC	3 cut(s)	68, 581, 828
BshNI	GGYRCC	5 cut(s)	38, 227, 412, 471, 647
BshTI	ACCGGT	1 cut(s)	650
BsiHKCI	CYCGRG	3 cut(s)	524, 743, 877
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	224, 286, 562
BsmAI	GTCTC	1 cut(s)	820
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	3 cut(s)	68, 581, 828
Bso31I	GGTCTC	1 cut(s)	820
BsoBI	CYCGRG	3 cut(s)	524, 743, 877
Bsp143I	GATC	2 cut(s)	19, 739
Bsp1720I	GCTNAGC	2 cut(s)	455, 677
Bsp19I	CCATGG	1 cut(s)	810
BspANI	GGCC	3 cut(s)	68, 581, 828
BspCNI	CTCAG	5 cut(s)	76, 253, 403, 447, 669
BspLI	GGNNCC	9 cut(s)	40, 229, 399, 414, 473, 551, 613, 649, 686
BspMAI	CTGCAG	3 cut(s)	170, 480, 699
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	2 cut(s)	27, 747
BspQI	GCTCTTC	1 cut(s)	785
BspT107I	GGYRCC	5 cut(s)	38, 227, 412, 471, 647
BspTNI	GGTCTC	1 cut(s)	820
BsrBI	CCGCTC	2 cut(s)	179, 199
BsrFI	RCCGGY	5 cut(s)	77, 394, 608, 650, 715
BssAI	RCCGGY	5 cut(s)	77, 394, 608, 650, 715
BssECI	CCNNGG	3 cut(s)	491, 810, 876
BssMI	GATC	2 cut(s)	19, 739
BssNI	GRCGYC	4 cut(s)	228, 245, 377, 636
BssT1I	CCWWGG	1 cut(s)	810
Bst2UI	CCWGG	4 cut(s)	431, 557, 578, 673
Bst6I	CTCTTC	2 cut(s)	434, 785
BstACI	GRCGYC	4 cut(s)	228, 245, 377, 636
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	419
BstC8I	GCNNGC	5 cut(s)	365, 396, 476, 610, 774
BstDEI	CTNAG	5 cut(s)	63, 240, 390, 455, 677
BstDSI	CCRYGG	2 cut(s)	491, 810
BstF5I	GGATG	2 cut(s)	105, 738
BstH2I	RGCGCY	2 cut(s)	231, 325
BstHHI	GCGC	4 cut(s)	230, 324, 535, 724
BstKTI	GATC	2 cut(s)	22, 742
BstMAI	GTCTC	1 cut(s)	820
BstMBI	GATC	2 cut(s)	19, 739
BstNI	CCWGG	4 cut(s)	431, 557, 578, 673
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	5 cut(s)	285, 429, 555, 576, 671
BstSFI	CTRYAG	3 cut(s)	166, 476, 695
BstV1I	GCAGC	9 cut(s)	42, 45, 180, 223, 438, 471, 474, 681, 781
BstX2I	RGATCY	1 cut(s)	739
BstYI	RGATCY	1 cut(s)	739
BsuRI	GGCC	3 cut(s)	68, 581, 828
BtgI	CCRYGG	2 cut(s)	491, 810
BtsCI	GGATG	2 cut(s)	105, 738
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	5
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	5 cut(s)	365, 396, 476, 610, 774
CaiI	CAGNNNCTG	3 cut(s)	454, 484, 694
CfoI	GCGC	4 cut(s)	230, 324, 535, 724
Cfr10I	RCCGGY	5 cut(s)	77, 394, 608, 650, 715
Cfr13I	GGNCC	1 cut(s)	289
CseI	GACGC	4 cut(s)	385, 460, 625, 784
Csp6I	GTAC	1 cut(s)	39
CspAI	ACCGGT	1 cut(s)	650
CviAII	CATG	5 cut(s)	82, 520, 583, 811, 856
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	5 cut(s)	63, 240, 390, 455, 677
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	2 cut(s)	21, 741
DpnII	GATC	2 cut(s)	19, 739
Eam1104I	CTCTTC	2 cut(s)	434, 785
EarI	CTCTTC	2 cut(s)	434, 785
EciI	GGCGGA	1 cut(s)	595
Eco130I	CCWWGG	1 cut(s)	810
Eco31I	GGTCTC	1 cut(s)	820
Eco47I	GGWCC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	807
Eco72I	CACGTG	1 cut(s)	419
Eco88I	CYCGRG	3 cut(s)	524, 743, 877
EcoRII	CCWGG	4 cut(s)	429, 555, 576, 671
EcoT14I	CCWWGG	1 cut(s)	810
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	5 cut(s)	85, 523, 586, 814, 859
FaiI	YATR	5 cut(s)	83, 521, 584, 812, 857
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	5 cut(s)	81, 519, 582, 810, 855
FokI	GGATG	2 cut(s)	92, 745
FspBI	CTAG	2 cut(s)	350, 849
GlaI	GCGC	4 cut(s)	229, 323, 534, 723
GsaI	CCCAGC	1 cut(s)	130
GsuI	CTGGAG	2 cut(s)	539, 560
HaeII	RGCGCY	2 cut(s)	231, 325
HaeIII	GGCC	3 cut(s)	68, 581, 828
HgaI	GACGC	4 cut(s)	385, 460, 625, 784
HhaI	GCGC	4 cut(s)	230, 324, 535, 724
Hin1I	GRCGYC	4 cut(s)	228, 245, 377, 636
Hin1II	CATG	5 cut(s)	85, 523, 586, 814, 859
Hin6I	GCGC	4 cut(s)	228, 322, 533, 722
HinP1I	GCGC	4 cut(s)	228, 322, 533, 722
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	3 cut(s)	386, 602, 860
HphI	GGTGA	3 cut(s)	67, 665, 718
Hpy166II	GTNNAC	2 cut(s)	94, 709
Hpy188I	TCNGA	3 cut(s)	243, 601, 739
Hpy188III	TCNNGA	3 cut(s)	23, 625, 745
Hpy8I	GTNNAC	2 cut(s)	94, 709
Hpy99I	CGWCG	3 cut(s)	250, 379, 641
HpyAV	CCTTC	2 cut(s)	10, 82
HpyCH4IV	ACGT	3 cut(s)	245, 418, 543
HpyCH4V	TGCA	3 cut(s)	168, 478, 697
HpyF3I	CTNAG	5 cut(s)	63, 240, 390, 455, 677
HpySE526I	ACGT	3 cut(s)	245, 418, 543
Hsp92I	GRCGYC	4 cut(s)	228, 245, 377, 636
Hsp92II	CATG	5 cut(s)	85, 523, 586, 814, 859
HspAI	GCGC	4 cut(s)	228, 322, 533, 722
KasI	GGCGCC	1 cut(s)	227
KpnI	GGTACC	1 cut(s)	42
KroI	GCCGGC	2 cut(s)	394, 608
KroNI	GCCGGC	2 cut(s)	396, 610
Kzo9I	GATC	2 cut(s)	19, 739
LguI	GCTCTTC	1 cut(s)	785
LmnI	GCTCC	5 cut(s)	184, 403, 617, 684, 766
Lsp1109I	GCAGC	9 cut(s)	42, 45, 180, 223, 438, 471, 474, 681, 781
LweI	GCATC	2 cut(s)	456, 681
MaeI	CTAG	2 cut(s)	350, 849
MaeII	ACGT	3 cut(s)	245, 418, 543
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	21, 741
MbiI	CCGCTC	2 cut(s)	179, 199
MboI	GATC	2 cut(s)	19, 739
MboII	GAAGA	5 cut(s)	265, 451, 511, 514, 802
MflI	RGATCY	1 cut(s)	739
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	596, 854
MmeI	TCCRAC	2 cut(s)	624, 717
MroNI	GCCGGC	2 cut(s)	394, 608
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	2 cut(s)	36, 772
MspR9I	CCNGG	5 cut(s)	287, 431, 557, 578, 673
MvaI	CCWGG	4 cut(s)	431, 557, 578, 673
NaeI	GCCGGC	2 cut(s)	396, 610
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	810
NdeII	GATC	2 cut(s)	19, 739
NgoMIV	GCCGGC	2 cut(s)	394, 608
NlaIII	CATG	5 cut(s)	85, 523, 586, 814, 859
NlaIV	GGNNCC	9 cut(s)	40, 229, 399, 414, 473, 551, 613, 649, 686
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	524
PaqCI	CACCTGC	1 cut(s)	688
PciSI	GCTCTTC	1 cut(s)	785
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PdiI	GCCGGC	2 cut(s)	396, 610
PfeI	GAWTC	1 cut(s)	386
PflFI	GACNNNGTC	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	285
PinAI	ACCGGT	1 cut(s)	650
PleI	GAGTC	2 cut(s)	596, 854
PluTI	GGCGCC	1 cut(s)	231
PmaCI	CACGTG	1 cut(s)	419
PmlI	CACGTG	1 cut(s)	419
PpsI	GAGTC	2 cut(s)	596, 854
Ppu21I	YACGTR	1 cut(s)	419
Psp6I	CCWGG	4 cut(s)	429, 555, 576, 671
PspCI	CACGTG	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	4 cut(s)	429, 555, 576, 671
PspN4I	GGNNCC	9 cut(s)	40, 229, 399, 414, 473, 551, 613, 649, 686
PspPI	GGNCC	1 cut(s)	289
PspXI	VCTCGAGB	1 cut(s)	524
PstI	CTGCAG	3 cut(s)	170, 480, 699
PstNI	CAGNNNCTG	3 cut(s)	454, 484, 694
PsuI	RGATCY	1 cut(s)	739
PsyI	GACNNNGTC	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	772
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	785
Sau3AI	GATC	2 cut(s)	19, 739
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	2 cut(s)	596, 854
ScrFI	CCNGG	5 cut(s)	287, 431, 557, 578, 673
SfaNI	GCATC	2 cut(s)	456, 681
SfcI	CTRYAG	3 cut(s)	166, 476, 695
SfoI	GGCGCC	1 cut(s)	229
Sfr274I	CTCGAG	1 cut(s)	524
SgrAI	CRCCGGYG	2 cut(s)	650, 715
SinI	GGWCC	1 cut(s)	289
SlaI	CTCGAG	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SspDI	GGCGCC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	350, 849
StyD4I	CCNGG	5 cut(s)	285, 429, 555, 576, 671
StyI	CCWWGG	1 cut(s)	810
TaiI	ACGT	3 cut(s)	248, 421, 546
TaqI	TCGA	3 cut(s)	303, 336, 525
TauI	GCSGC	8 cut(s)	116, 199, 382, 448, 533, 572, 636, 648
TfiI	GAWTC	1 cut(s)	386
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	9 cut(s)	30, 33, 168, 211, 426, 484, 487, 694, 769
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	844
TspGWI	ACGGA	1 cut(s)	451
TspRI	CASTG	1 cut(s)	12
Tth111I	GACNNNGTC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	289
XceI	RCATGY	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	524
XspI	CTAG	2 cut(s)	350, 849
ZraI	GACGTC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.