Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005417

Physical Location & Seq

Genomic Coordinates Reverse (-)

19673592 .. 19674104

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012534

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCCCATCGTCGCCTCTGACTCCGCTGACTCCCTACCCGTCCTGAAAGGCAGCTTCTGCGGCACCGGTGATGTGGAGGTGCTGTCCAGGCTGAACCGGAGCCAGTTACTGCAGGTGGTGGTGAACTCGCCGGTGGTGCAGATGAGGATGTTGGATCTCAGTGGAGCAGCTAGATTTGCTGAACAACATAGCGTCATCAGGTCCATGGATCCCTCAGCTGCACCCAACGCATGGATGAGGCAGGTACGGACAATCAAGCAGGGGTGCTGCTGCATCGGGGCTGGGACCGGTTGGAGATGGGTTGCAGGTGAGCGACTGGAGAAGAGGGCCTGGAGAAGACGAAGGCGGTCCGGTCGGAATCGTGCCGAAATCAGGCTGGACGAGCATGGGTGTCCACAGAGGAAGCGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.31

Weight (kDa)

11.12

Isoelectric Point (pI)

66.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22100
fragaria_vesca	FvH4_1g29760 FvH4_6g43750
malus_domestica	MD17G1091100.v1.1
prunus_persica	Prupe.3G222500_v2.0.a1
pyrus_communis	pycom17g08800
rosa_chinensis	RchiOBHm_Chr2g0160481
rosa_laevigata	RLG00000000602 RLG00000006966 RLG00000012534 RLG00000020740 RLG00000021217 RLG00000035791
rosa_multiflora	Rmu_sc0002771.1_g000001 Rmu_ssc0000110.1_g000012
rosa_roxburghii	Rroxscaffold_2G00089790
rosa_rugosa	Rorug02G0234500 Rorug02G0483400 Rorug04G0068000
rosa_samantha	Rh2AG291900 Rh2AG548600 Rh2BG222400 Rh2BG562200 Rh2CG532900 Rh2DG571000 Rh7CG232200 Rh7CG308300 Rh7DG351600
rosa_wichuraiana	Rw2G045420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	103, 296
Acc36I	ACCTGC	3 cut(s)	103, 232, 296
AccB1I	GGYRCC	1 cut(s)	62
AccB7I	CCANNNNNTGG	1 cut(s)	231
AciI	CCGC	3 cut(s)	24, 60, 346
AclWI	GGATC	3 cut(s)	162, 203, 216
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	231, 372
AgeI	ACCGGT	2 cut(s)	65, 287
AjnI	CCWGG	2 cut(s)	86, 329
AluBI	AGCT	3 cut(s)	54, 170, 218
AluI	AGCT	3 cut(s)	54, 170, 218
AlwI	GGATC	3 cut(s)	162, 203, 216
AlwNI	CAGNNNCTG	2 cut(s)	57, 109
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	5 cut(s)	51, 167, 218, 267, 270
AsiGI	ACCGGT	2 cut(s)	65, 287
AspS9I	GGNCC	4 cut(s)	201, 285, 327, 348
AsuHPI	GGTGA	3 cut(s)	80, 133, 320
AvaII	GGWCC	3 cut(s)	201, 285, 348
BamHI	GGATCC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	343
BbvCI	CCTCAGC	1 cut(s)	214
BbvI	GCAGC	5 cut(s)	63, 179, 205, 254, 257
BccI	CCATC	2 cut(s)	14, 291
BciT130I	CCWGG	2 cut(s)	88, 331
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	110
BfuAI	ACCTGC	3 cut(s)	103, 232, 296
BisI	GCNGC	6 cut(s)	52, 61, 168, 219, 268, 271
BlsI	GCNGC	6 cut(s)	53, 62, 169, 220, 269, 272
Bme1390I	CCNGG	2 cut(s)	88, 331
Bme18I	GGWCC	3 cut(s)	201, 285, 348
BmgT120I	GGNCC	4 cut(s)	201, 285, 327, 348
BmiI	GGNNCC	4 cut(s)	64, 101, 210, 286
BmrFI	CCNGG	2 cut(s)	88, 331
BmsI	GCATC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	2 cut(s)	338, 352
Bpu10I	CCTNAGC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	4 cut(s)	65, 96, 287, 350
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 372
Bse118I	RCCGGY	3 cut(s)	65, 130, 287
Bse1I	ACTGG	2 cut(s)	103, 321
BseBI	CCWGG	2 cut(s)	88, 331
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	153, 240
BseLI	CCNNNNNNNGG	2 cut(s)	231, 372
BseMII	CTCAG	2 cut(s)	172, 228
BseNI	ACTGG	2 cut(s)	103, 321
BseXI	GCAGC	5 cut(s)	63, 179, 205, 254, 257
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	2 cut(s)	158, 204
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	62
BshTI	ACCGGT	2 cut(s)	65, 287
BsiEI	CGRYCG	1 cut(s)	355
BsiSI	CCGG	5 cut(s)	66, 97, 131, 288, 351
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	231, 372
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	154, 208
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	3 cut(s)	24, 60, 346
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	2 cut(s)	171, 227
BspLI	GGNNCC	4 cut(s)	64, 101, 210, 286
BspMAI	CTGCAG	1 cut(s)	114
BspMI	ACCTGC	3 cut(s)	103, 232, 296
BspPI	GGATC	3 cut(s)	162, 203, 216
BspT107I	GGYRCC	1 cut(s)	62
BsrFI	RCCGGY	3 cut(s)	65, 130, 287
BsrI	ACTGG	2 cut(s)	103, 321
BssAI	RCCGGY	3 cut(s)	65, 130, 287
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	154, 208
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	88, 331
Bst6I	CTCTTC	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	158, 214
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	153, 240
BstKTI	GATC	2 cut(s)	157, 211
BstMBI	GATC	2 cut(s)	154, 208
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 60, 88, 136, 176, 227, 382
BstNI	CCWGG	2 cut(s)	88, 331
BstSCI	CCNGG	2 cut(s)	86, 329
BstSFI	CTRYAG	1 cut(s)	110
BstV1I	GCAGC	5 cut(s)	63, 179, 205, 254, 257
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	2 cut(s)	154, 208
BstYI	RGATCY	2 cut(s)	154, 208
BsuRI	GGCC	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	153, 240
BtsIMutI	CAGTG	1 cut(s)	166
BveI	ACCTGC	3 cut(s)	103, 232, 296
CaiI	CAGNNNCTG	2 cut(s)	57, 109
Cfr10I	RCCGGY	3 cut(s)	65, 130, 287
Cfr13I	GGNCC	4 cut(s)	201, 285, 327, 348
CpoI	CGGWCCG	1 cut(s)	348
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	245
CspAI	ACCGGT	2 cut(s)	65, 287
CspI	CGGWCCG	1 cut(s)	348
CviAII	CATG	3 cut(s)	205, 231, 386
CviJI	RGCY	8 cut(s)	54, 91, 102, 170, 218, 281, 329, 376
CviKI_1	RGCY	8 cut(s)	54, 91, 102, 170, 218, 281, 329, 376
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	2 cut(s)	158, 214
DpnI	GATC	2 cut(s)	156, 210
DpnII	GATC	2 cut(s)	154, 208
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	3 cut(s)	201, 285, 348
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRII	CCWGG	2 cut(s)	86, 329
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	208, 234, 389
FaiI	YATR	4 cut(s)	189, 206, 232, 387
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	3 cut(s)	204, 230, 385
Fnu4HI	GCNGC	6 cut(s)	52, 61, 168, 219, 268, 271
FokI	GGATG	2 cut(s)	160, 247
Fsp4HI	GCNGC	6 cut(s)	52, 61, 168, 219, 268, 271
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	6 cut(s)	52, 61, 168, 219, 268, 271
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	2 cut(s)	338, 352
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	5 cut(s)	66, 97, 131, 288, 351
HgaI	GACGC	1 cut(s)	181
Hin1II	CATG	3 cut(s)	208, 234, 389
HinfI	GANTC	3 cut(s)	20, 29, 358
HpaII	CCGG	5 cut(s)	66, 97, 131, 288, 351
HphI	GGTGA	3 cut(s)	80, 133, 320
Hpy166II	GTNNAC	2 cut(s)	124, 395
Hpy188I	TCNGA	2 cut(s)	19, 357
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	2 cut(s)	124, 395
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	336
HpyCH4V	TGCA	5 cut(s)	112, 139, 221, 273, 305
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 60, 88, 136, 176, 227, 382
HpyF3I	CTNAG	2 cut(s)	158, 214
Hsp92II	CATG	3 cut(s)	208, 234, 389
Kzo9I	GATC	2 cut(s)	154, 208
LmnI	GCTCC	2 cut(s)	99, 164
Lsp1109I	GCAGC	5 cut(s)	63, 179, 205, 254, 257
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	2 cut(s)	156, 210
MboI	GATC	2 cut(s)	154, 208
MboII	GAAGA	2 cut(s)	334, 348
MflI	RGATCY	2 cut(s)	154, 208
MlyI	GAGTC	2 cut(s)	14, 23
MmeI	TCCRAC	3 cut(s)	132, 272, 335
MnlI	CCTC	7 cut(s)	25, 70, 138, 223, 231, 318, 393
MspA1I	CMGCKG	2 cut(s)	26, 218
MspI	CCGG	5 cut(s)	66, 97, 131, 288, 351
MspR9I	CCNGG	2 cut(s)	88, 331
MvaI	CCWGG	2 cut(s)	88, 331
MwoI	GCNNNNNNNGC	7 cut(s)	57, 60, 88, 136, 176, 227, 382
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	2 cut(s)	154, 208
NlaIII	CATG	3 cut(s)	208, 234, 389
NlaIV	GGNNCC	4 cut(s)	64, 101, 210, 286
PaqCI	CACCTGC	2 cut(s)	103, 296
PfeI	GAWTC	1 cut(s)	358
PflMI	CCANNNNNTGG	1 cut(s)	231
PinAI	ACCGGT	2 cut(s)	65, 287
PkrI	GCNGC	6 cut(s)	53, 62, 169, 220, 269, 272
PleI	GAGTC	2 cut(s)	14, 23
PpsI	GAGTC	2 cut(s)	14, 23
Psp6I	CCWGG	2 cut(s)	86, 329
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	2 cut(s)	86, 329
PspN4I	GGNNCC	4 cut(s)	64, 101, 210, 286
PspPI	GGNCC	4 cut(s)	201, 285, 327, 348
PstI	CTGCAG	1 cut(s)	114
PstNI	CAGNNNCTG	2 cut(s)	57, 109
PsuI	RGATCY	2 cut(s)	154, 208
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
Rsr2I	CGGWCCG	1 cut(s)	348
RsrII	CGGWCCG	1 cut(s)	348
SatI	GCNGC	6 cut(s)	52, 61, 168, 219, 268, 271
Sau3AI	GATC	2 cut(s)	154, 208
Sau96I	GGNCC	4 cut(s)	201, 285, 327, 348
SchI	GAGTC	2 cut(s)	14, 23
ScrFI	CCNGG	2 cut(s)	88, 331
SetI	ASST	8 cut(s)	56, 81, 117, 172, 203, 220, 246, 310
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	110
SgrAI	CRCCGGYG	2 cut(s)	65, 130
SinI	GGWCC	3 cut(s)	201, 285, 348
SsiI	CCGC	3 cut(s)	24, 60, 346
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	86, 329
StyI	CCWWGG	1 cut(s)	204
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	358
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	5 cut(s)	51, 167, 218, 267, 270
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	231
VpaK11BI	GGWCC	3 cut(s)	201, 285, 348
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.