Rh7DG351600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005417
Physical Location & Seq
Forward (+)
46796553 .. 46796750
198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG351600.1

Sequence Viewer

Length: 198 bp
ATGGACACCGTCACCATGCTCGTGGTGGCACACCTCTACGTTCGATTCCTCCAGCCTCAGGTCACTGCCGTCCATGCCATGCCCATCGTCGCCTCCGGCTCCGTGCCCGTCTTGAAACAGCAGCTAGACGAGAGAACACGCCTGCGAGATCGGCGCAACCTCTACTTCCCCGGTCTTCGATTTCACGACTGCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.52

Weight (kDa)

9.77

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 108
BauI CACGAG 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 53
BcnI CCSGG 1 cut(s) 171
BfaI CTAG 2 cut(s) 125, 196
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse21I CCTNAGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 1 cut(s) 133
BsiSI CCGG 2 cut(s) 96, 171
BslI CCNNNNNNNGG 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 1 cut(s) 148
BssSI CACGAG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 57
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 2 cut(s) 74, 151
BstSCI CCNGG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 133
BstV2I GAAGAC 1 cut(s) 167
BstXI CCANNNNNNTGG 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 57
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 156
CviAII CATG 3 cut(s) 16, 74, 79
CviJI RGCY 3 cut(s) 55, 99, 124
CviKI_1 RGCY 3 cut(s) 55, 99, 124
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco81I CCTNAGG 1 cut(s) 57
FaeI CATG 3 cut(s) 19, 77, 82
FaiI YATR 3 cut(s) 17, 75, 80
FatI CATG 3 cut(s) 15, 73, 78
Fnu4HI GCNGC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 122
FspBI CTAG 2 cut(s) 125, 196
GlaI GCGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 35
HapII CCGG 2 cut(s) 96, 171
HhaI GCGC 1 cut(s) 156
Hin1II CATG 3 cut(s) 19, 77, 82
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 1 cut(s) 45
HpaII CCGG 2 cut(s) 96, 171
HphI GGTGA 1 cut(s) 4
Hpy188III TCNNGA 2 cut(s) 112, 185
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 151
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 3 cut(s) 19, 77, 82
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 5 cut(s) 44, 65, 109, 155, 184
Lsp1109I GCAGC 1 cut(s) 133
MaeI CTAG 2 cut(s) 125, 196
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 10, 61
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 108
MnlI CCTC 5 cut(s) 44, 59, 66, 103, 170
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 2 cut(s) 96, 171
MspR9I CCNGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 74, 151
NciI CCSGG 1 cut(s) 171
NdeII GATC 1 cut(s) 148
NlaIII CATG 3 cut(s) 19, 77, 82
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 10, 61
PfeI GAWTC 1 cut(s) 45
PflFI GACNNNGTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 100
PsyI GACNNNGTC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 20
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 108
SetI ASST 5 cut(s) 36, 42, 63, 126, 162
SmiMI CAYNNNNRTG 1 cut(s) 20
SspMI CTAG 2 cut(s) 125, 196
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 43, 178
TfiI GAWTC 1 cut(s) 45
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 2 cut(s) 10, 61
TseI GCWGC 1 cut(s) 121
Tsp45I GTSAC 2 cut(s) 10, 61
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 1 cut(s) 70
Tth111I GACNNNGTC 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XspI CTAG 2 cut(s) 125, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.