Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005417

Physical Location & Seq

Genomic Coordinates Reverse (-)

23215190 .. 23217016

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGATGACCGCTTATTTTCTCCAATAAGCACCGAACTGCCGCTCTACCAATACGGCGTCGTTTTGTCCCCCAACGACTACTCAATCTTCAACCACCTCCCGAATCTCCTCACACTCGACAACTCCCCCTACAAGCGCACTCGCCTACTCGACTCCACTCACCACACCCTAGCAGCCTCCTCAGCCTACCAGCTTTACCCTTCTCCTTCGGTGGTGGCGCCATGTGGCAGAAGGCTGGCGAGTGAGAGGCGGCAGAGCGGGCAGACGCTGAGCGACAAGACGCGGTGCCTGCAGAAGCTGCTTCCCTGGGAGAACAAGATGGACACCGCCACCATGCTCGAGTCGGCGCACCGCTACGTTCGCTTCCTCCAAGCTCAGGTCGCCGCGCTCCAGGCCATGCCTATCGTCGCCTCCGACTTCTCCCTCCCCGTCCTAACACGTGGCGGCGGAGAGGATTGGTTTTGGGGGAGATGCGGTCCTGGGTTTTTAGTTTTTACTGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

169

Amino Acids

18.87

Weight (kDa)

8.49

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22100
fragaria_vesca	FvH4_1g29760 FvH4_6g43750
malus_domestica	MD17G1091100.v1.1
prunus_persica	Prupe.3G222500_v2.0.a1
pyrus_communis	pycom17g08800
rosa_chinensis	RchiOBHm_Chr2g0160481
rosa_laevigata	RLG00000000602 RLG00000006966 RLG00000012534 RLG00000020740 RLG00000021217 RLG00000035791
rosa_multiflora	Rmu_sc0002771.1_g000001 Rmu_ssc0000110.1_g000012
rosa_roxburghii	Rroxscaffold_2G00089790
rosa_rugosa	Rorug02G0234500 Rorug02G0483400 Rorug04G0068000
rosa_samantha	Rh2AG291900 Rh2AG548600 Rh2BG222400 Rh2BG562200 Rh2CG532900 Rh2DG571000 Rh7CG232200 Rh7CG308300 Rh7DG351600
rosa_wichuraiana	Rw2G045420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	217, 285
AccBSI	CCGCTC	2 cut(s)	43, 258
AccII	CGCG	2 cut(s)	283, 386
AcvI	CACGTG	1 cut(s)	440
AcyI	GRCGYC	2 cut(s)	57, 218
AfiI	CCNNNNNNNGG	1 cut(s)	376
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	3 cut(s)	305, 390, 478
AluBI	AGCT	3 cut(s)	193, 298, 374
AluI	AGCT	3 cut(s)	193, 298, 374
AlwNI	CAGNNNCTG	2 cut(s)	268, 298
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	2 cut(s)	173, 298
AspLEI	GCGC	4 cut(s)	138, 220, 349, 388
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	476
BanI	GGYRCC	2 cut(s)	217, 285
BbrPI	CACGTG	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	185, 285
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	3 cut(s)	307, 392, 480
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	6 cut(s)	41, 174, 251, 299, 384, 445
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	6 cut(s)	42, 175, 252, 300, 385, 446
Bme1390I	CCNGG	3 cut(s)	307, 392, 480
Bme18I	GGWCC	1 cut(s)	476
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	2 cut(s)	219, 287
BmrFI	CCNGG	3 cut(s)	307, 392, 480
BmsI	GCATC	1 cut(s)	461
BpmI	CTGGAG	1 cut(s)	374
Bpu10I	CCTNAGC	2 cut(s)	181, 375
Bpu1102I	GCTNAGC	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	440
BsaHI	GRCGYC	2 cut(s)	57, 218
BsaJI	CCNNGG	3 cut(s)	305, 306, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
BseBI	CCWGG	3 cut(s)	307, 392, 480
BseDI	CCNNGG	3 cut(s)	305, 306, 479
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMII	CTCAG	3 cut(s)	195, 260, 389
BseRI	GAGGAG	2 cut(s)	98, 169
BseXI	GCAGC	2 cut(s)	185, 285
Bsh1236I	CGCG	2 cut(s)	283, 386
BshFI	GGCC	1 cut(s)	395
BshNI	GGYRCC	2 cut(s)	217, 285
BsiHKCI	CYCGRG	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	338
Bsp1720I	GCTNAGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	3 cut(s)	194, 261, 388
BspFNI	CGCG	2 cut(s)	283, 386
BspLI	GGNNCC	2 cut(s)	219, 287
BspMAI	CTGCAG	1 cut(s)	294
BspT107I	GGYRCC	2 cut(s)	217, 285
BsrBI	CCGCTC	2 cut(s)	43, 258
BssECI	CCNNGG	3 cut(s)	305, 306, 479
BssNI	GRCGYC	2 cut(s)	57, 218
Bst2UI	CCWGG	3 cut(s)	307, 392, 480
Bst4CI	ACNGT	1 cut(s)	499
BstACI	GRCGYC	2 cut(s)	57, 218
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	3 cut(s)	237, 260, 290
BstDEI	CTNAG	3 cut(s)	181, 269, 375
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	2 cut(s)	283, 386
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	4 cut(s)	138, 220, 349, 388
BstMWI	GCNNNNNNNGC	7 cut(s)	182, 259, 289, 298, 360, 380, 392
BstNI	CCWGG	3 cut(s)	307, 392, 480
BstSCI	CCNGG	3 cut(s)	305, 390, 478
BstSFI	CTRYAG	1 cut(s)	290
BstUI	CGCG	2 cut(s)	283, 386
BstV1I	GCAGC	2 cut(s)	185, 285
BsuRI	GGCC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	3 cut(s)	237, 260, 290
CaiI	CAGNNNCTG	2 cut(s)	268, 298
CfoI	GCGC	4 cut(s)	138, 220, 349, 388
Cfr13I	GGNCC	1 cut(s)	476
CseI	GACGC	3 cut(s)	46, 274, 289
CviAII	CATG	3 cut(s)	222, 334, 397
CviJI	RGCY	7 cut(s)	176, 185, 193, 235, 298, 374, 395
CviKI_1	RGCY	7 cut(s)	176, 185, 193, 235, 298, 374, 395
DdeI	CTNAG	3 cut(s)	181, 269, 375
DinI	GGCGCC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	476
Eco72I	CACGTG	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	338
EcoRII	CCWGG	3 cut(s)	305, 390, 478
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
FaeI	CATG	3 cut(s)	225, 337, 400
FaiI	YATR	3 cut(s)	223, 335, 398
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	3 cut(s)	221, 333, 396
FauI	CCCGC	1 cut(s)	251
Fnu4HI	GCNGC	6 cut(s)	41, 174, 251, 299, 384, 445
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	6 cut(s)	41, 174, 251, 299, 384, 445
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	4 cut(s)	137, 219, 348, 387
GluI	GCNGC	6 cut(s)	41, 174, 251, 299, 384, 445
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	395
HgaI	GACGC	3 cut(s)	46, 274, 289
HhaI	GCGC	4 cut(s)	138, 220, 349, 388
Hin1I	GRCGYC	2 cut(s)	57, 218
Hin1II	CATG	3 cut(s)	225, 337, 400
Hin6I	GCGC	4 cut(s)	136, 218, 347, 386
HinP1I	GCGC	4 cut(s)	136, 218, 347, 386
HinfI	GANTC	3 cut(s)	103, 152, 341
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	1 cut(s)	100
Hpy99I	CGWCG	2 cut(s)	62, 410
HpyAV	CCTTC	3 cut(s)	210, 216, 225
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	2 cut(s)	357, 439
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	7 cut(s)	182, 259, 289, 298, 360, 380, 392
HpyF3I	CTNAG	3 cut(s)	181, 269, 375
HpySE526I	ACGT	2 cut(s)	357, 439
Hsp92I	GRCGYC	2 cut(s)	57, 218
Hsp92II	CATG	3 cut(s)	225, 337, 400
HspAI	GCGC	4 cut(s)	136, 218, 347, 386
KasI	GGCGCC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	393
Lsp1109I	GCAGC	2 cut(s)	185, 285
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	2 cut(s)	357, 439
MbiI	CCGCTC	2 cut(s)	43, 258
MboII	GAAGA	1 cut(s)	79
Mly113I	GGCGCC	1 cut(s)	218
MlyI	GAGTC	2 cut(s)	146, 350
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	9 cut(s)	107, 119, 187, 190, 240, 377, 421, 434, 445
MspR9I	CCNGG	3 cut(s)	307, 392, 480
MvaI	CCWGG	3 cut(s)	307, 392, 480
MvnI	CGCG	2 cut(s)	283, 386
MwoI	GCNNNNNNNGC	7 cut(s)	182, 259, 289, 298, 360, 380, 392
NarI	GGCGCC	1 cut(s)	218
NlaIII	CATG	3 cut(s)	225, 337, 400
NlaIV	GGNNCC	2 cut(s)	219, 287
PaeR7I	CTCGAG	1 cut(s)	338
PasI	CCCWGGG	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	6 cut(s)	42, 175, 252, 300, 385, 446
PleI	GAGTC	2 cut(s)	146, 349
PluTI	GGCGCC	1 cut(s)	221
PmaCI	CACGTG	1 cut(s)	440
PmlI	CACGTG	1 cut(s)	440
PpsI	GAGTC	2 cut(s)	146, 349
Ppu21I	YACGTR	1 cut(s)	440
Psp6I	CCWGG	3 cut(s)	305, 390, 478
PspCI	CACGTG	1 cut(s)	440
PspGI	CCWGG	3 cut(s)	305, 390, 478
PspN4I	GGNNCC	2 cut(s)	219, 287
PspPI	GGNCC	1 cut(s)	476
PspXI	VCTCGAGB	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	294
PstNI	CAGNNNCTG	2 cut(s)	268, 298
SatI	GCNGC	6 cut(s)	41, 174, 251, 299, 384, 445
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	2 cut(s)	146, 350
ScrFI	CCNGG	3 cut(s)	307, 392, 480
SetI	ASST	7 cut(s)	99, 195, 300, 360, 376, 381, 442
SfaNI	GCATC	1 cut(s)	461
SfcI	CTRYAG	1 cut(s)	290
SfoI	GGCGCC	1 cut(s)	219
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	1 cut(s)	476
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SspDI	GGCGCC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	3 cut(s)	305, 390, 478
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	2 cut(s)	360, 442
TaqI	TCGA	3 cut(s)	117, 150, 339
TauI	GCSGC	4 cut(s)	43, 253, 386, 447
TfiI	GAWTC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	173, 298
VpaK11BI	GGWCC	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	338
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.