Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005417

Physical Location & Seq

Genomic Coordinates Reverse (-)

68109375 .. 68109827

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020740

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTAGATTCCTCCAGCCTCAGGTCGCGGCCCTCCATGCCATGCCCATCATCGCCTCCGACTCTACGCGACTCCCTGCCCGTCCTGAAACGCAGCTTTTGCAGCACCGGTGATGTGGAGGTGCTGTCCAGGCTAAGCCGGAGCCAGTTGTTGCAGGTGGTGGTGAACTCGCCGGTGGTGCAGATGAGGATGTCGGATCTCAGTGGAGCAGCTGGATTTGCTGAACAAACAGAGCGTCATCAGGTCCATGGATCCCTCAACTGCACCCAACGTCCAATCGGTGCAGAGGTTTTCTCGGTTTCCTCCGATCTGGAGACTTCGAGAGATGGTGGCTGTGACGGTGGAGAGCGCCAGTGTGGGGTACCTGCAGGCATGGATGAGGCCGGTACTGACGAGCAAGCAGGGGTGTTGCTGCATCGGTGCTGGGACCGGTCGGAGATGGGCTGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.13

Weight (kDa)

5.33

Isoelectric Point (pI)

75.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22100
fragaria_vesca	FvH4_1g29760 FvH4_6g43750
malus_domestica	MD17G1091100.v1.1
prunus_persica	Prupe.3G222500_v2.0.a1
pyrus_communis	pycom17g08800
rosa_chinensis	RchiOBHm_Chr2g0160481
rosa_laevigata	RLG00000000602 RLG00000006966 RLG00000012534 RLG00000020740 RLG00000021217 RLG00000035791
rosa_multiflora	Rmu_sc0002771.1_g000001 Rmu_ssc0000110.1_g000012
rosa_roxburghii	Rroxscaffold_2G00089790
rosa_rugosa	Rorug02G0234500 Rorug02G0483400 Rorug04G0068000
rosa_samantha	Rh2AG291900 Rh2AG548600 Rh2BG222400 Rh2BG562200 Rh2CG532900 Rh2DG571000 Rh7CG232200 Rh7CG308300 Rh7DG351600
rosa_wichuraiana	Rw2G045420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	145, 438
Acc36I	ACCTGC	3 cut(s)	145, 373, 438
Acc65I	GGTACC	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	361
AccII	CGCG	2 cut(s)	28, 69
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	3 cut(s)	204, 246, 259
AfaI	GTAC	2 cut(s)	363, 388
AfiI	CCNNNNNNNGG	2 cut(s)	21, 358
AgeI	ACCGGT	2 cut(s)	107, 429
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	2 cut(s)	96, 212
AluI	AGCT	2 cut(s)	96, 212
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	3 cut(s)	204, 246, 259
AoxI	GGCC	2 cut(s)	29, 381
ApeKI	GCWGC	5 cut(s)	93, 102, 209, 412, 444
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
AsiGI	ACCGGT	2 cut(s)	107, 429
Asp718I	GGTACC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	3 cut(s)	30, 244, 427
AsuHPI	GGTGA	2 cut(s)	122, 175
AvaII	GGWCC	2 cut(s)	244, 427
AxyI	CCTNAGG	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	361
BbvI	GCAGC	5 cut(s)	105, 114, 221, 399, 431
BccI	CCATC	3 cut(s)	55, 320, 433
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	308
BfmI	CTRYAG	2 cut(s)	366, 445
BfoI	RGCGCY	1 cut(s)	352
BfuAI	ACCTGC	3 cut(s)	145, 373, 438
BisI	GCNGC	6 cut(s)	29, 94, 103, 210, 413, 445
BlpI	GCTNAGC	1 cut(s)	134
BlsI	GCNGC	6 cut(s)	30, 95, 104, 211, 414, 446
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	2 cut(s)	244, 427
BmgT120I	GGNCC	3 cut(s)	30, 244, 427
BmiI	GGNNCC	4 cut(s)	143, 253, 363, 428
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	424
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	2 cut(s)	107, 429
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 358
Bse118I	RCCGGY	4 cut(s)	107, 172, 383, 429
Bse1I	ACTGG	2 cut(s)	145, 352
Bse21I	CCTNAGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	2 cut(s)	195, 382
BseLI	CCNNNNNNNGG	2 cut(s)	21, 358
BseMII	CTCAG	2 cut(s)	34, 214
BseNI	ACTGG	2 cut(s)	145, 352
BseXI	GCAGC	5 cut(s)	105, 114, 221, 399, 431
BseYI	CCCAGC	1 cut(s)	423
BsgI	GTGCAG	3 cut(s)	200, 247, 303
Bsh1236I	CGCG	2 cut(s)	28, 69
Bsh1285I	CGRYCG	1 cut(s)	434
BshFI	GGCC	2 cut(s)	31, 383
BshNI	GGYRCC	1 cut(s)	361
BshTI	ACCGGT	2 cut(s)	107, 429
BsiEI	CGRYCG	1 cut(s)	434
BsiSI	CCGG	5 cut(s)	108, 139, 173, 384, 430
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	21, 358
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	31, 383
Bsp143I	GATC	3 cut(s)	196, 251, 307
Bsp1720I	GCTNAGC	1 cut(s)	134
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	31, 383
BspCNI	CTCAG	2 cut(s)	33, 213
BspFNI	CGCG	2 cut(s)	28, 69
BspLI	GGNNCC	4 cut(s)	143, 253, 363, 428
BspMAI	CTGCAG	2 cut(s)	370, 449
BspMI	ACCTGC	3 cut(s)	145, 373, 438
BspPI	GGATC	3 cut(s)	204, 246, 259
BspT107I	GGYRCC	1 cut(s)	361
BsrFI	RCCGGY	4 cut(s)	107, 172, 383, 429
BsrI	ACTGG	2 cut(s)	145, 352
BssAI	RCCGGY	4 cut(s)	107, 172, 383, 429
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	196, 251, 307
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	370, 399
BstDEI	CTNAG	3 cut(s)	20, 134, 200
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	195, 382
BstFNI	CGCG	2 cut(s)	28, 69
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	3 cut(s)	199, 254, 310
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	3 cut(s)	196, 251, 307
BstMCI	CGRYCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 99, 102, 130, 178, 218
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	2 cut(s)	366, 445
BstUI	CGCG	2 cut(s)	28, 69
BstV1I	GCAGC	5 cut(s)	105, 114, 221, 399, 431
BstX2I	RGATCY	2 cut(s)	196, 251
BstYI	RGATCY	2 cut(s)	196, 251
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	31, 383
BtgI	CCRYGG	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	195, 382
BtsIMutI	CAGTG	2 cut(s)	208, 359
BveI	ACCTGC	3 cut(s)	145, 373, 438
Cac8I	GCNNGC	2 cut(s)	370, 399
CfoI	GCGC	1 cut(s)	351
Cfr10I	RCCGGY	4 cut(s)	107, 172, 383, 429
Cfr13I	GGNCC	3 cut(s)	30, 244, 427
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	362, 387
CspAI	ACCGGT	2 cut(s)	107, 429
CviAII	CATG	4 cut(s)	37, 42, 248, 373
CviQI	GTAC	2 cut(s)	362, 387
DdeI	CTNAG	3 cut(s)	20, 134, 200
DpnI	GATC	3 cut(s)	198, 253, 309
DpnII	GATC	3 cut(s)	196, 251, 307
Eco130I	CCWWGG	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	244, 427
Eco81I	CCTNAGG	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	4 cut(s)	40, 45, 251, 376
FaiI	YATR	4 cut(s)	38, 43, 249, 374
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	4 cut(s)	36, 41, 247, 372
Fnu4HI	GCNGC	6 cut(s)	29, 94, 103, 210, 413, 445
FokI	GGATG	2 cut(s)	202, 389
Fsp4HI	GCNGC	6 cut(s)	29, 94, 103, 210, 413, 445
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	6 cut(s)	29, 94, 103, 210, 413, 445
GsaI	CCCAGC	1 cut(s)	427
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	31, 383
HapII	CCGG	5 cut(s)	108, 139, 173, 384, 430
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	40, 45, 251, 376
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	8, 61, 71
HpaII	CCGG	5 cut(s)	108, 139, 173, 384, 430
HphI	GGTGA	2 cut(s)	122, 175
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	4 cut(s)	60, 196, 307, 436
Hpy188III	TCNNGA	3 cut(s)	85, 311, 321
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	8 cut(s)	102, 154, 181, 264, 284, 368, 415, 447
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 99, 102, 130, 178, 218
HpyF3I	CTNAG	3 cut(s)	20, 134, 200
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	4 cut(s)	40, 45, 251, 376
HspAI	GCGC	1 cut(s)	349
KpnI	GGTACC	1 cut(s)	365
Kzo9I	GATC	3 cut(s)	196, 251, 307
LmnI	GCTCC	2 cut(s)	141, 206
Lsp1109I	GCAGC	5 cut(s)	105, 114, 221, 399, 431
LweI	GCATC	1 cut(s)	424
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	3 cut(s)	198, 253, 309
MboI	GATC	3 cut(s)	196, 251, 307
MflI	RGATCY	2 cut(s)	196, 251
MlyI	GAGTC	2 cut(s)	55, 65
MmeI	TCCRAC	3 cut(s)	83, 174, 414
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	5 cut(s)	108, 139, 173, 384, 430
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	2 cut(s)	28, 69
MwoI	GCNNNNNNNGC	6 cut(s)	37, 99, 102, 130, 178, 218
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	3 cut(s)	196, 251, 307
NlaIII	CATG	4 cut(s)	40, 45, 251, 376
NlaIV	GGNNCC	4 cut(s)	143, 253, 363, 428
NmuCI	GTSAC	1 cut(s)	335
PaqCI	CACCTGC	2 cut(s)	145, 438
PfeI	GAWTC	1 cut(s)	8
PinAI	ACCGGT	2 cut(s)	107, 429
PkrI	GCNGC	6 cut(s)	30, 95, 104, 211, 414, 446
PleI	GAGTC	2 cut(s)	55, 65
PpsI	GAGTC	2 cut(s)	55, 65
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	4 cut(s)	143, 253, 363, 428
PspPI	GGNCC	3 cut(s)	30, 244, 427
PstI	CTGCAG	2 cut(s)	370, 449
PsuI	RGATCY	2 cut(s)	196, 251
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	2 cut(s)	363, 388
RsaNI	GTAC	2 cut(s)	362, 387
SatI	GCNGC	6 cut(s)	29, 94, 103, 210, 413, 445
Sau3AI	GATC	3 cut(s)	196, 251, 307
Sau96I	GGNCC	3 cut(s)	30, 244, 427
SbfI	CCTGCAGG	1 cut(s)	370
SchI	GAGTC	2 cut(s)	55, 65
ScrFI	CCNGG	1 cut(s)	130
SdaI	CCTGCAGG	1 cut(s)	370
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	2 cut(s)	366, 445
SgrAI	CRCCGGYG	2 cut(s)	107, 172
SinI	GGWCC	2 cut(s)	244, 427
Sse8387I	CCTGCAGG	1 cut(s)	370
SsiI	CCGC	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	320
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	8
TscAI	CASTG	2 cut(s)	208, 359
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	5 cut(s)	93, 102, 209, 412, 444
Tsp45I	GTSAC	1 cut(s)	335
TspRI	CASTG	2 cut(s)	208, 359
VpaK11BI	GGWCC	2 cut(s)	244, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.