RLG00000000602

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005417
Physical Location & Seq
Forward (+)
2461475 .. 2462005
531 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000602

Sequence Viewer

Length: 453 bp
ATGCCCATCGTCGCCTCCGACTCCGCTGACTCCATGCTCGTCCTAAAACGCAGCTTCTGCAACACCGGTGATGTGGAGGTGCTGTCCAGGCTGAGCCGGAGCCAGTTGTTGCAGGTGGTGGTGAACTCGCCGGTGGTGCAGATGAGGTTGTCGGATCTTGGTGGAGCAGCTGGATTTTCTGAACAAACAGAGCGTCATCAGGTCCATGGATCCCTCAGCTGCACCCAACGTCCGATCGGTGCAGAGGTTTTCTCGGTTTCCTCCAATCTGGAGACGTCGAGAGATGGTGGCTGTGACGATGGAGAGCGCCGGCGTGGGGCACCTGCAGGCATGGATGAGGCCGGTACGGAAGAGCAAGCAGGGGTGTTGCTGCGTCGGGGCTGGGACCGGAATCGGGCTGGAGGAGCATGGGTGTCTACAGGGGAAGCGTGGGTGGCCGAAGAAAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.1

Weight (kDa)

5.06

Isoelectric Point (pI)

61.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 103, 331
AatII GACGTC 1 cut(s) 278
Acc36I ACCTGC 2 cut(s) 103, 331
AccB1I GGYRCC 1 cut(s) 319
AccI GTMKAC 1 cut(s) 416
AciI CCGC 1 cut(s) 24
AclWI GGATC 3 cut(s) 162, 204, 217
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 1 cut(s) 446
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 2 cut(s) 316, 394
AgeI ACCGGT 1 cut(s) 65
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 3 cut(s) 54, 170, 219
AluI AGCT 3 cut(s) 54, 170, 219
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 3 cut(s) 162, 204, 217
AlwNI CAGNNNCTG 1 cut(s) 57
AoxI GGCC 2 cut(s) 339, 435
ApeKI GCWGC 4 cut(s) 51, 167, 219, 370
ApoI RAATTY 1 cut(s) 446
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AsiGI ACCGGT 1 cut(s) 65
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 202, 385
AsuHPI GGTGA 2 cut(s) 80, 133
AvaII GGWCC 2 cut(s) 202, 385
BaeGI GKGCMC 1 cut(s) 322
BamHI GGATCC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 319
BbvCI CCTCAGC 1 cut(s) 215
BbvI GCAGC 4 cut(s) 63, 179, 206, 357
BccI CCATC 3 cut(s) 14, 278, 293
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 266
BfmI CTRYAG 2 cut(s) 324, 417
BfoI RGCGCY 1 cut(s) 310
BfuAI ACCTGC 2 cut(s) 103, 331
BisI GCNGC 4 cut(s) 52, 168, 220, 371
BlpI GCTNAGC 1 cut(s) 92
BlsI GCNGC 4 cut(s) 53, 169, 221, 372
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 2 cut(s) 202, 385
BmgT120I GGNCC 2 cut(s) 202, 385
BmiI GGNNCC 4 cut(s) 101, 211, 321, 386
BmrFI CCNGG 1 cut(s) 88
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 2 cut(s) 290, 420
Bpu10I CCTNAGC 1 cut(s) 215
Bpu1102I GCTNAGC 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 205
BsaWI WCCGGW 2 cut(s) 65, 387
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 396, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 394
Bse118I RCCGGY 4 cut(s) 65, 130, 309, 341
Bse1I ACTGG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 2 cut(s) 316, 394
BseMII CTCAG 2 cut(s) 83, 229
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 417
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 4 cut(s) 63, 179, 206, 357
BseYI CCCAGC 1 cut(s) 381
BsgI GTGCAG 3 cut(s) 158, 205, 261
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 2 cut(s) 341, 437
BshNI GGYRCC 1 cut(s) 319
BshTI ACCGGT 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 6 cut(s) 66, 97, 131, 310, 342, 388
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 316, 394
BsmAI GTCTC 1 cut(s) 266
BsmBI CGTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 2 cut(s) 341, 437
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 3 cut(s) 154, 209, 234
Bsp1720I GCTNAGC 1 cut(s) 92
Bsp19I CCATGG 1 cut(s) 205
BspACI CCGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 341, 437
BspCNI CTCAG 2 cut(s) 84, 228
BspLI GGNNCC 4 cut(s) 101, 211, 321, 386
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 2 cut(s) 103, 331
BspPI GGATC 3 cut(s) 162, 204, 217
BspQI GCTCTTC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 319
BsrFI RCCGGY 4 cut(s) 65, 130, 309, 341
BsrI ACTGG 1 cut(s) 103
BssAI RCCGGY 4 cut(s) 65, 130, 309, 341
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 3 cut(s) 154, 209, 234
BssNI GRCGYC 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 311, 328, 357
BstDEI CTNAG 2 cut(s) 92, 215
BstDSI CCRYGG 1 cut(s) 205
BstF5I GGATG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 3 cut(s) 157, 212, 237
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 3 cut(s) 154, 209, 234
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 5 cut(s) 57, 88, 136, 404, 434
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 2 cut(s) 324, 417
BstSLI GKGCMC 1 cut(s) 322
BstV1I GCAGC 4 cut(s) 63, 179, 206, 357
BstX2I RGATCY 2 cut(s) 154, 209
BstYI RGATCY 2 cut(s) 154, 209
BsuRI GGCC 2 cut(s) 341, 437
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 1 cut(s) 340
BveI ACCTGC 2 cut(s) 103, 331
Cac8I GCNNGC 3 cut(s) 311, 328, 357
CaiI CAGNNNCTG 1 cut(s) 57
CfoI GCGC 1 cut(s) 309
Cfr10I RCCGGY 4 cut(s) 65, 130, 309, 341
Cfr13I GGNCC 2 cut(s) 202, 385
CseI GACGC 2 cut(s) 182, 362
Csp6I GTAC 1 cut(s) 345
CspAI ACCGGT 1 cut(s) 65
CviAII CATG 4 cut(s) 34, 206, 331, 408
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 92, 215
DpnI GATC 3 cut(s) 156, 211, 236
DpnII GATC 3 cut(s) 154, 209, 234
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 202, 385
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 4 cut(s) 37, 209, 334, 411
FaiI YATR 4 cut(s) 35, 207, 332, 409
FaqI GGGAC 1 cut(s) 398
FatI CATG 4 cut(s) 33, 205, 330, 407
FblI GTMKAC 1 cut(s) 416
Fnu4HI GCNGC 4 cut(s) 52, 168, 220, 371
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 4 cut(s) 52, 168, 220, 371
GlaI GCGC 1 cut(s) 308
GluI GCNGC 4 cut(s) 52, 168, 220, 371
GsaI CCCAGC 1 cut(s) 385
GsuI CTGGAG 2 cut(s) 290, 420
HaeII RGCGCY 1 cut(s) 310
HaeIII GGCC 2 cut(s) 341, 437
HapII CCGG 6 cut(s) 66, 97, 131, 310, 342, 388
HgaI GACGC 2 cut(s) 182, 362
HhaI GCGC 1 cut(s) 309
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 4 cut(s) 37, 209, 334, 411
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HinfI GANTC 3 cut(s) 20, 29, 391
HpaII CCGG 6 cut(s) 66, 97, 131, 310, 342, 388
HphI GGTGA 2 cut(s) 80, 133
Hpy166II GTNNAC 2 cut(s) 124, 417
Hpy188I TCNGA 5 cut(s) 19, 154, 181, 234, 452
Hpy188III TCNNGA 2 cut(s) 269, 279
Hpy8I GTNNAC 2 cut(s) 124, 417
Hpy99I CGWCG 3 cut(s) 14, 280, 378
HpyCH4IV ACGT 2 cut(s) 229, 275
HpyCH4V TGCA 6 cut(s) 60, 112, 139, 222, 242, 326
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 88, 136, 404, 434
HpyF3I CTNAG 2 cut(s) 92, 215
HpySE526I ACGT 2 cut(s) 229, 275
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 4 cut(s) 37, 209, 334, 411
HspAI GCGC 1 cut(s) 307
KroI GCCGGC 1 cut(s) 309
KroNI GCCGGC 1 cut(s) 311
Kzo9I GATC 3 cut(s) 154, 209, 234
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 3 cut(s) 99, 164, 404
Lsp1109I GCAGC 4 cut(s) 63, 179, 206, 357
MaeII ACGT 2 cut(s) 229, 275
MaeIII GTNAC 1 cut(s) 293
MalI GATC 3 cut(s) 156, 211, 236
MboI GATC 3 cut(s) 154, 209, 234
MboII GAAGA 2 cut(s) 362, 452
MflI RGATCY 2 cut(s) 154, 209
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 1 cut(s) 446
MlyI GAGTC 2 cut(s) 14, 23
MmeI TCCRAC 2 cut(s) 42, 132
MnlI CCTC 8 cut(s) 25, 70, 138, 224, 238, 271, 331, 395
MreI CGCCGGCG 1 cut(s) 309
MroNI GCCGGC 1 cut(s) 309
MspA1I CMGCKG 3 cut(s) 26, 170, 219
MspI CCGG 6 cut(s) 66, 97, 131, 310, 342, 388
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 5 cut(s) 57, 88, 136, 404, 434
NaeI GCCGGC 1 cut(s) 311
NcoI CCATGG 1 cut(s) 205
NdeII GATC 3 cut(s) 154, 209, 234
NgoMIV GCCGGC 1 cut(s) 309
NlaIII CATG 4 cut(s) 37, 209, 334, 411
NlaIV GGNNCC 4 cut(s) 101, 211, 321, 386
NmuCI GTSAC 1 cut(s) 293
PaqCI CACCTGC 2 cut(s) 103, 331
PciSI GCTCTTC 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PdiI GCCGGC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 391
PinAI ACCGGT 1 cut(s) 65
PkrI GCNGC 4 cut(s) 53, 169, 221, 372
Ple19I CGATCG 1 cut(s) 237
PleI GAGTC 2 cut(s) 14, 23
PpsI GAGTC 2 cut(s) 14, 23
Psp6I CCWGG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 381
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 4 cut(s) 101, 211, 321, 386
PspPI GGNCC 2 cut(s) 202, 385
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 57
PsuI RGATCY 2 cut(s) 154, 209
PvuI CGATCG 1 cut(s) 237
PvuII CAGCTG 2 cut(s) 170, 219
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 345
SatI GCNGC 4 cut(s) 52, 168, 220, 371
Sau3AI GATC 3 cut(s) 154, 209, 234
Sau96I GGNCC 2 cut(s) 202, 385
SbfI CCTGCAGG 1 cut(s) 328
SchI GAGTC 2 cut(s) 14, 23
ScrFI CCNGG 1 cut(s) 88
SdaI CCTGCAGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 322
SfcI CTRYAG 2 cut(s) 324, 417
SgrAI CRCCGGYG 3 cut(s) 65, 130, 309
SinI GGWCC 2 cut(s) 202, 385
Sse8387I CCTGCAGG 1 cut(s) 328
Sse9I AATT 1 cut(s) 446
SsiI CCGC 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 205
TaiI ACGT 2 cut(s) 232, 278
TaqI TCGA 1 cut(s) 278
TasI AATT 1 cut(s) 446
TfiI GAWTC 1 cut(s) 391
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 4 cut(s) 51, 167, 219, 370
Tsp45I GTSAC 1 cut(s) 293
TspGWI ACGGA 1 cut(s) 362
VpaK11BI GGWCC 2 cut(s) 202, 385
XapI RAATTY 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 416
ZraI GACGTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.