RLG00000006966

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005417
Physical Location & Seq
Forward (+)
12201468 .. 12202630
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006966

Sequence Viewer

Length: 324 bp
ATGGCTGAGCCGGAGCCAGTTGCTGCAGGTGATGGTGAATCACTGGTGGTGCAGATGAGGATGTCGGATCTTGGTGGAGCAATTGGATTTACTGAACAAACAGAGCGTCATCAGGTCCTTGGATCCCTCAGCTGCACCCAACGTCCGATCGGTGCAGAGGTTTTCCCGATTTCCTCCAATCTGGAAACTTCGAGAGATGGTGGTTGTGACGGTGGAGAGCGCCGGCGTAGGGCACCTGCAAGCATGGATGAGGTCGGTATGGACGAGCAAGCAGGGGTGTTGCTACGTCGGGGCTGGGACCGATCGGAGATGGGCTACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.57

Weight (kDa)

4.73

Isoelectric Point (pI)

75.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 17, 244
Acc36I ACCTGC 2 cut(s) 17, 244
AccB1I GGYRCC 1 cut(s) 232
AclWI GGATC 3 cut(s) 75, 117, 130
AfiI CCNNNNNNNGG 1 cut(s) 229
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
AlwI GGATC 3 cut(s) 75, 117, 130
AlwNI CAGNNNCTG 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 23, 132
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 115, 298
AsuHPI GGTGA 2 cut(s) 41, 47
AvaII GGWCC 2 cut(s) 115, 298
BaeGI GKGCMC 1 cut(s) 235
BamHI GGATCC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 232
BbvCI CCTCAGC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 10, 119
BccI CCATC 3 cut(s) 26, 191, 304
BfmI CTRYAG 2 cut(s) 24, 316
BfoI RGCGCY 1 cut(s) 223
BfuAI ACCTGC 2 cut(s) 17, 244
BisI GCNGC 2 cut(s) 24, 133
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 2 cut(s) 25, 134
Bme18I GGWCC 2 cut(s) 115, 298
BmgT120I GGNCC 2 cut(s) 115, 298
BmiI GGNNCC 4 cut(s) 15, 124, 234, 299
Bpu10I CCTNAGC 1 cut(s) 128
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse118I RCCGGY 1 cut(s) 222
Bse1I ACTGG 2 cut(s) 17, 48
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 2 cut(s) 66, 253
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 2 cut(s) 17, 48
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 2 cut(s) 10, 119
BseYI CCCAGC 1 cut(s) 294
BsgI GTGCAG 3 cut(s) 71, 118, 174
Bsh1285I CGRYCG 2 cut(s) 150, 305
BshNI GGYRCC 1 cut(s) 232
BsiEI CGRYCG 2 cut(s) 150, 305
BsiSI CCGG 2 cut(s) 11, 223
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 4 cut(s) 67, 122, 147, 302
Bsp1720I GCTNAGC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 141
BspLI GGNNCC 4 cut(s) 15, 124, 234, 299
BspMAI CTGCAG 1 cut(s) 28
BspMI ACCTGC 2 cut(s) 17, 244
BspPI GGATC 3 cut(s) 75, 117, 130
BspT107I GGYRCC 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 222
BsrI ACTGG 2 cut(s) 17, 48
BssAI RCCGGY 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 4 cut(s) 67, 122, 147, 302
BssT1I CCWWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 212
BstC8I GCNNGC 3 cut(s) 224, 241, 270
BstDEI CTNAG 2 cut(s) 6, 128
BstF5I GGATG 2 cut(s) 66, 253
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 4 cut(s) 70, 125, 150, 305
BstMBI GATC 4 cut(s) 67, 122, 147, 302
BstMCI CGRYCG 2 cut(s) 150, 305
BstSFI CTRYAG 2 cut(s) 24, 316
BstSLI GKGCMC 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 10, 119
BstX2I RGATCY 2 cut(s) 67, 122
BstYI RGATCY 2 cut(s) 67, 122
BtsCI GGATG 2 cut(s) 66, 253
BtsIMutI CAGTG 1 cut(s) 41
BveI ACCTGC 2 cut(s) 17, 244
Cac8I GCNNGC 3 cut(s) 224, 241, 270
CaiI CAGNNNCTG 1 cut(s) 23
CfoI GCGC 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 115, 298
CseI GACGC 1 cut(s) 95
CviAII CATG 1 cut(s) 244
CviJI RGCY 6 cut(s) 5, 10, 16, 132, 294, 315
CviKI_1 RGCY 6 cut(s) 5, 10, 16, 132, 294, 315
DdeI CTNAG 2 cut(s) 6, 128
DpnI GATC 4 cut(s) 69, 124, 149, 304
DpnII GATC 4 cut(s) 67, 122, 147, 302
Eco130I CCWWGG 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 115, 298
EcoO109I RGGNCCY 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 1 cut(s) 247
FaiI YATR 2 cut(s) 245, 260
FaqI GGGAC 1 cut(s) 311
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 24, 133
FokI GGATG 2 cut(s) 73, 260
Fsp4HI GCNGC 2 cut(s) 24, 133
GlaI GCGC 1 cut(s) 221
GluI GCNGC 2 cut(s) 24, 133
GsaI CCCAGC 1 cut(s) 298
HaeII RGCGCY 1 cut(s) 223
HapII CCGG 2 cut(s) 11, 223
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 222
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HinfI GANTC 1 cut(s) 38
HpaII CCGG 2 cut(s) 11, 223
HphI GGTGA 2 cut(s) 41, 47
Hpy188I TCNGA 3 cut(s) 67, 147, 307
Hpy188III TCNNGA 3 cut(s) 166, 182, 192
Hpy99I CGWCG 1 cut(s) 291
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 2 cut(s) 142, 286
HpyCH4V TGCA 5 cut(s) 26, 52, 135, 155, 239
HpyF3I CTNAG 2 cut(s) 6, 128
HpySE526I ACGT 2 cut(s) 142, 286
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 1 cut(s) 220
KroI GCCGGC 1 cut(s) 222
KroNI GCCGGC 1 cut(s) 224
Kzo9I GATC 4 cut(s) 67, 122, 147, 302
LmnI GCTCC 2 cut(s) 13, 77
Lsp1109I GCAGC 2 cut(s) 10, 119
MaeII ACGT 2 cut(s) 142, 286
MaeIII GTNAC 1 cut(s) 206
MalI GATC 4 cut(s) 69, 124, 149, 304
MboI GATC 4 cut(s) 67, 122, 147, 302
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 2 cut(s) 67, 122
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 5 cut(s) 51, 137, 151, 184, 244
MreI CGCCGGCG 1 cut(s) 222
MroNI GCCGGC 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 2 cut(s) 11, 223
MunI CAATTG 1 cut(s) 81
NaeI GCCGGC 1 cut(s) 224
NdeII GATC 4 cut(s) 67, 122, 147, 302
NgoMIV GCCGGC 1 cut(s) 222
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 4 cut(s) 15, 124, 234, 299
NmuCI GTSAC 1 cut(s) 206
PaqCI CACCTGC 2 cut(s) 17, 244
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 25, 134
Ple19I CGATCG 2 cut(s) 150, 305
PpuMI RGGWCCY 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 294
PspN4I GGNNCC 4 cut(s) 15, 124, 234, 299
PspPI GGNCC 2 cut(s) 115, 298
PspPPI RGGWCCY 1 cut(s) 115
PstI CTGCAG 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 2 cut(s) 67, 122
PvuI CGATCG 2 cut(s) 150, 305
PvuII CAGCTG 1 cut(s) 132
SatI GCNGC 2 cut(s) 24, 133
Sau3AI GATC 4 cut(s) 67, 122, 147, 302
Sau96I GGNCC 2 cut(s) 115, 298
SduI GDGCHC 1 cut(s) 235
SetI ASST 9 cut(s) 31, 117, 134, 145, 162, 238, 255, 289, 323
SfcI CTRYAG 2 cut(s) 24, 316
SgrAI CRCCGGYG 1 cut(s) 222
SinI GGWCC 2 cut(s) 115, 298
Sse9I AATT 1 cut(s) 81
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 2 cut(s) 145, 289
TaqI TCGA 1 cut(s) 191
TaqII GACCGA 1 cut(s) 315
TasI AATT 1 cut(s) 81
TfiI GAWTC 1 cut(s) 38
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 2 cut(s) 23, 132
Tsp45I GTSAC 1 cut(s) 206
TspRI CASTG 1 cut(s) 48
VpaK11BI GGWCC 2 cut(s) 115, 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.