Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005417

Physical Location & Seq

Genomic Coordinates Reverse (-)

7783638 .. 7784469

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAGACACCAGCTTACGATTTCGACTCACTCACTGACTTACCACCGCTTCCTCCTTCCGATTTCACTCCTTCCAACGCCTTCACCTTCCCCGACCACAACCTCGACTTTTCCTTCCTCGACTCCACTCTGTCTCTCCTCAATCGGCACCATCTCTCTGAGTCCACTCGCTTGGAACAGATTTTTTACGACTCCACTCACACTCAGCTCTTTCACAACGACGACACCACCACCACCACCACACCGTTTCTCCACCTTCCTGATCTCAAATCCATCGACGCCGTTGAAGAACCGACGACGATGAAGCTGTTTCCATCTCTCTCTCCTCCTCTTCCCGCCGCCAAACGTCAGAAGCTTAACTCAACTTCCTCTTCAACAACCTCTGGATCTCCAACTGCGTCAAACGACGGTGGTATTATTACCAAACGACGGAAGATCTCAGACAAAATCAGATCCCTGGAGAAACTCATGCCGTGGGAGAGAAAGATGAACTTAGCGATGACTCTAGAAGAATCTCACAAATACATCAAGTTTCTTCAATCTCAGATTGCTTCACTCCGTTGGATGCCTCTCGAATCTGTCTACAACACCGCCGGTGAAGTAGGAGAAACAGATTTGCTCAAATCTCTGACACGTCAACAGATTCTTCAGGTTCTTGCGAATTCTCCAGGCTCACGAAACGTACTCTCCTCTCGTGGTGTTTGTGTCTTCTCTTATGAACAGCTTCTCTCTCTCAAGACAATGTCGAGAAACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

252

Amino Acids

28.34

Weight (kDa)

6.16

Isoelectric Point (pI)

66.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22100
fragaria_vesca	FvH4_1g29760 FvH4_6g43750
malus_domestica	MD17G1091100.v1.1
prunus_persica	Prupe.3G222500_v2.0.a1
pyrus_communis	pycom17g08800
rosa_chinensis	RchiOBHm_Chr2g0160481
rosa_laevigata	RLG00000000602 RLG00000006966 RLG00000012534 RLG00000020740 RLG00000021217 RLG00000035791
rosa_multiflora	Rmu_sc0002771.1_g000001 Rmu_ssc0000110.1_g000012
rosa_roxburghii	Rroxscaffold_2G00089790
rosa_rugosa	Rorug02G0234500 Rorug02G0483400 Rorug04G0068000
rosa_samantha	Rh2AG291900 Rh2AG548600 Rh2BG222400 Rh2BG562200 Rh2CG532900 Rh2DG571000 Rh7CG232200 Rh7CG308300 Rh7DG351600
rosa_wichuraiana	Rw2G045420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	582
AciI	CCGC	4 cut(s)	47, 336, 339, 591
AclWI	GGATC	2 cut(s)	394, 447
AcsI	RAATTY	1 cut(s)	661
AcuI	CTGAAG	1 cut(s)	632
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	1 cut(s)	684
AfiI	CCNNNNNNNGG	1 cut(s)	429
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	3 cut(s)	287, 375, 539
AjiI	CACGTC	1 cut(s)	635
AjnI	CCWGG	2 cut(s)	456, 667
AluBI	AGCT	5 cut(s)	14, 208, 307, 355, 724
AluI	AGCT	5 cut(s)	14, 208, 307, 355, 724
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	394, 447
ApoI	RAATTY	1 cut(s)	661
Asp700I	GAANNNNTTC	1 cut(s)	723
AsuHPI	GGTGA	2 cut(s)	76, 608
BanI	GGYRCC	1 cut(s)	147
BauI	CACGAG	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	700
BccI	CCATC	3 cut(s)	159, 281, 322
BceAI	ACGGC	2 cut(s)	266, 457
BciT130I	CCWGG	2 cut(s)	458, 669
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	506
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	458, 669
BmgBI	CACGTC	1 cut(s)	635
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	2 cut(s)	458, 669
BmsI	GCATC	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	700
BpmI	CTGGAG	2 cut(s)	479, 651
BpuEI	CTTGAG	1 cut(s)	719
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	456, 473
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 671, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse118I	RCCGGY	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	458, 669
BseDI	CCNNGG	2 cut(s)	456, 473
BseGI	GGATG	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseMII	CTCAG	4 cut(s)	150, 218, 453, 557
BseRI	GAGGAG	4 cut(s)	128, 315, 318, 679
BshNI	GGYRCC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	594
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	262, 386, 435, 452
BspACI	CCGC	4 cut(s)	47, 336, 339, 591
BspCNI	CTCAG	4 cut(s)	151, 217, 452, 556
BspLI	GGNNCC	1 cut(s)	149
BspPI	GGATC	2 cut(s)	394, 447
BspT107I	GGYRCC	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	593
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	456, 473
BssMI	GATC	4 cut(s)	262, 386, 435, 452
BssNI	GRCGYC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	693
Bst2BI	CACGAG	1 cut(s)	693
Bst2UI	CCWGG	2 cut(s)	458, 669
Bst4CI	ACNGT	2 cut(s)	246, 410
Bst6I	CTCTTC	2 cut(s)	336, 376
BstACI	GRCGYC	1 cut(s)	279
BstDEI	CTNAG	5 cut(s)	159, 204, 439, 493, 543
BstDSI	CCRYGG	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	570
BstKTI	GATC	4 cut(s)	265, 389, 438, 455
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	4 cut(s)	262, 386, 435, 452
BstNI	CCWGG	2 cut(s)	458, 669
BstSCI	CCNGG	2 cut(s)	456, 667
BstV2I	GAAGAC	1 cut(s)	700
BstX2I	RGATCY	3 cut(s)	386, 435, 452
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	3 cut(s)	386, 435, 452
BtgI	CCRYGG	1 cut(s)	473
BtgZI	GCGATG	1 cut(s)	512
BtrI	CACGTC	1 cut(s)	635
BtsCI	GGATG	1 cut(s)	570
BtsIMutI	CAGTG	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	593
CseI	GACGC	2 cut(s)	287, 387
Csp6I	GTAC	1 cut(s)	683
CviAII	CATG	1 cut(s)	469
CviJI	RGCY	6 cut(s)	14, 208, 307, 355, 672, 724
CviKI_1	RGCY	6 cut(s)	14, 208, 307, 355, 672, 724
CviQI	GTAC	1 cut(s)	683
DdeI	CTNAG	5 cut(s)	159, 204, 439, 493, 543
DpnI	GATC	4 cut(s)	264, 388, 437, 454
DpnII	GATC	4 cut(s)	262, 386, 435, 452
Eam1104I	CTCTTC	2 cut(s)	336, 376
EarI	CTCTTC	2 cut(s)	336, 376
Eco57I	CTGAAG	1 cut(s)	632
EcoRI	GAATTC	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	456, 667
FaeI	CATG	1 cut(s)	472
FaiI	YATR	2 cut(s)	470, 717
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	1 cut(s)	468
FauI	CCCGC	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	577
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	2 cut(s)	479, 651
HapII	CCGG	1 cut(s)	594
HgaI	GACGC	2 cut(s)	287, 387
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	472
HincII	GTYRAC	1 cut(s)	638
HindII	GTYRAC	1 cut(s)	638
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	8 cut(s)	26, 122, 161, 191, 502, 512, 575, 643
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	2 cut(s)	76, 608
Hpy166II	GTNNAC	3 cut(s)	165, 583, 638
Hpy188I	TCNGA	8 cut(s)	61, 160, 351, 442, 452, 546, 630, 758
Hpy188III	TCNNGA	7 cut(s)	260, 384, 506, 572, 675, 736, 747
Hpy8I	GTNNAC	3 cut(s)	165, 583, 638
Hpy99I	CGWCG	6 cut(s)	224, 281, 298, 301, 410, 432
HpyAV	CCTTC	6 cut(s)	66, 81, 91, 97, 124, 266
HpyCH4III	ACNGT	2 cut(s)	246, 410
HpyCH4IV	ACGT	3 cut(s)	346, 634, 681
HpyF3I	CTNAG	5 cut(s)	159, 204, 439, 493, 543
HpySE526I	ACGT	3 cut(s)	346, 634, 681
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	472
Kzo9I	GATC	4 cut(s)	262, 386, 435, 452
LpnPI	CCDG	9 cut(s)	24, 273, 369, 443, 470, 607, 635, 654, 681
LweI	GCATC	1 cut(s)	555
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	3 cut(s)	346, 634, 681
MalI	GATC	4 cut(s)	264, 388, 437, 454
MboI	GATC	4 cut(s)	262, 386, 435, 452
MboII	GAAGA	8 cut(s)	299, 323, 363, 445, 521, 527, 638, 700
MflI	RGATCY	3 cut(s)	386, 435, 452
MluCI	AATT	1 cut(s)	661
MlyI	GAGTC	5 cut(s)	20, 116, 170, 185, 496
MmeI	TCCRAC	3 cut(s)	99, 416, 542
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	1 cut(s)	357
MspI	CCGG	1 cut(s)	594
MspR9I	CCNGG	2 cut(s)	458, 669
MvaI	CCWGG	2 cut(s)	458, 669
NdeII	GATC	4 cut(s)	262, 386, 435, 452
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	3 cut(s)	512, 575, 643
PflFI	GACNNNGTC	1 cut(s)	742
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	5 cut(s)	20, 116, 169, 185, 496
PpsI	GAGTC	5 cut(s)	20, 116, 169, 185, 496
Psp6I	CCWGG	2 cut(s)	456, 667
PspGI	CCWGG	2 cut(s)	456, 667
PspN4I	GGNNCC	1 cut(s)	149
PsuI	RGATCY	3 cut(s)	386, 435, 452
PsyI	GACNNNGTC	1 cut(s)	742
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	4 cut(s)	262, 386, 435, 452
SchI	GAGTC	5 cut(s)	20, 116, 170, 185, 496
ScrFI	CCNGG	2 cut(s)	458, 669
SfaNI	GCATC	1 cut(s)	555
SgrAI	CRCCGGYG	1 cut(s)	593
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	1 cut(s)	661
SsiI	CCGC	4 cut(s)	47, 336, 339, 591
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	2 cut(s)	456, 667
TaaI	ACNGT	2 cut(s)	246, 410
TaiI	ACGT	3 cut(s)	349, 637, 684
TaqI	TCGA	6 cut(s)	24, 105, 120, 276, 573, 746
TasI	AATT	1 cut(s)	661
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	3 cut(s)	512, 575, 643
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	40
TspDTI	ATGAA	3 cut(s)	317, 503, 732
TspGWI	ACGGA	2 cut(s)	445, 548
TspRI	CASTG	1 cut(s)	40
Tth111I	GACNNNGTC	1 cut(s)	742
XapI	RAATTY	1 cut(s)	661
XbaI	TCTAGA	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.